Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/31d8e15bb8dd612e6e035e078e0c26/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/4b4bce44069324ecc86ed08ccf2205/1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/31d8e15bb8dd612e6e035e078e0c26/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/5caf471a2a77592746b544b2666166/1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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