File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/4e94797a3168af58a7ac0cf037e0d5/.command.out
Size
1.8 KB
Attempt
  AIH curated blacklist: matched 6 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 313
  Pass (FILTER=PASS): 71 (22.7%)
  Fail (FILTER=FAIL): 242 (77.3%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 6
  All 6 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high): 72
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 30
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 28
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 19
  confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 15
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 13
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 9
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 8
  confidence_below_min(low<high): 8
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 5
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 4
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 4
  confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 4
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 4
  total_reads_below_min(6.0<8.0): 3

Breakdown by confidence:
  high: 71 pass, 9 fail (total: 80)
  low: 0 pass, 82 fail (total: 82)
  medium: 0 pass, 151 fail (total: 151)
Arriba filter: 313 rows -> 71 PASS; wrote 1173_KTN_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered.tsv and 1173_KTN_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: 1173_KTN_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filter_summary.txt