Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/dfc0fa64b354c5c4bea38cc06c2996/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/ca4d20e41802bc8c33ea65523f74cb/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/eea51d9f2d48591b2e0cc217c73c43/1173_FM_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/dfc0fa64b354c5c4bea38cc06c2996/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/27c91f0b684312a4f8644d8dae4475/1173_FM_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 272638709
[W::hts_idx_load3] The index file is older than the data file: 1173_FM_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	272638709
Known Splicing Events:	268698089
Partial Novel Splicing Events:	1115095
Novel Splicing Events:	2668078
Filtered Splicing Events:	157447

Total splicing  Junctions:	399434
Known Splicing Junctions:	228531
Partial Novel Splicing Junctions:	82421
Novel Splicing Junctions:	88482

===================================================================
Create BED file ...
Create Interact file ...