File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/701daa4b37cf390e7c0ee29f2b9d41/.command.out
Size
1.8 KB
Attempt
  AIH curated blacklist: matched 4 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 553
  Pass (FILTER=PASS): 21 (3.8%)
  Fail (FILTER=FAIL): 532 (96.2%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 4
  All 4 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 180
  confidence_below_min(medium<high): 80
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 42
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 36
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 36
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 31
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 30
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 16
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 12
  confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 10
  confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 10
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 10
  confidence_below_min(low<high): 10
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 8
  confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 6

Breakdown by confidence:
  high: 21 pass, 6 fail (total: 27)
  low: 0 pass, 307 fail (total: 307)
  medium: 0 pass, 219 fail (total: 219)
Arriba filter: 553 rows -> 21 PASS; wrote 1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered.tsv and 1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: 1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filter_summary.txt