AIH curated blacklist: matched 3 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 71
Pass (FILTER=PASS): 1 (1.4%)
Fail (FILTER=FAIL): 70 (98.6%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 3
All 3 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high): 22
confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 20
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 12
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 3
confidence_below_min(medium<high);aih_curated_blacklist: 2
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 2
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 1
total_reads_below_min(4.0<8.0): 1
total_reads_below_min(2.0<8.0): 1
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 1
confidence_below_min(low<high): 1
confidence_below_min(low<high);total_reads_below_min(5.0<8.0);aih_curated_blacklist: 1
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 1
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 1
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 1
Breakdown by confidence:
high: 1 pass, 2 fail (total: 3)
low: 0 pass, 8 fail (total: 8)
medium: 0 pass, 60 fail (total: 60)
Arriba filter: 71 rows -> 1 PASS; wrote 1173_RPC_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered.tsv and 1173_RPC_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: 1173_RPC_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filter_summary.txt