Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/21ac88c93d51c2227da56e0d9633a6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/21ac88c93d51c2227da56e0d9633a6/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/211787f14a7c21941da074b08f2da7/1173_CH0_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/29192fbdc33beb3b0c144bffc31841/1173_CH0_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 1173_CH0_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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