File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/fec8ed96510a78da74e9907fd29e86/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:03:09
                             Started mapping on |	Jun 08 10:09:43
                                    Finished on |	Jun 08 11:06:46
       Mapping speed, Million of reads per hour |	290.41

                          Number of input reads |	276135261
                      Average input read length |	217
                                    UNIQUE READS:
                   Uniquely mapped reads number |	255076291
                        Uniquely mapped reads % |	92.37%
                          Average mapped length |	217.28
                       Number of splices: Total |	177100056
            Number of splices: Annotated (sjdb) |	173157743
                       Number of splices: GT/AG |	174532267
                       Number of splices: GC/AG |	1279777
                       Number of splices: AT/AC |	108769
               Number of splices: Non-canonical |	1179243
                      Mismatch rate per base, % |	0.36%
                         Deletion rate per base |	0.03%
                        Deletion average length |	1.92
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.86
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	16084488
             % of reads mapped to multiple loci |	5.82%
        Number of reads mapped to too many loci |	550773
             % of reads mapped to too many loci |	0.20%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	3848595
                 % of reads unmapped: too short |	1.39%
                Number of reads unmapped: other |	575114
                     % of reads unmapped: other |	0.21%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%