File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/e5da5b2c6224806ef8ef9016236098/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 08:51:00
                             Started mapping on |	Jun 08 08:57:48
                                    Finished on |	Jun 08 09:26:16
       Mapping speed, Million of reads per hour |	326.58

                          Number of input reads |	154942038
                      Average input read length |	208
                                    UNIQUE READS:
                   Uniquely mapped reads number |	145091062
                        Uniquely mapped reads % |	93.64%
                          Average mapped length |	207.85
                       Number of splices: Total |	117507711
            Number of splices: Annotated (sjdb) |	115885940
                       Number of splices: GT/AG |	116108824
                       Number of splices: GC/AG |	858456
                       Number of splices: AT/AC |	103645
               Number of splices: Non-canonical |	436786
                      Mismatch rate per base, % |	0.27%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.03
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.71
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7603974
             % of reads mapped to multiple loci |	4.91%
        Number of reads mapped to too many loci |	463390
             % of reads mapped to too many loci |	0.30%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1533866
                 % of reads unmapped: too short |	0.99%
                Number of reads unmapped: other |	249746
                     % of reads unmapped: other |	0.16%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%