Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/8d3634cd695171888017f8cc392a8f/1173_PCB_T1_RNA_SLD_01_A23T55JLT4_1_2.fastp.fastq.gz
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/ef44db7b22047afd722ab69eb5dcdd/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/068bcd578de3a91de38ddd6862f9b0/1173_PCB_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/ef44db7b22047afd722ab69eb5dcdd/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/8d3634cd695171888017f8cc392a8f/1173_PCB_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)
-ctat genome lib [/tmp/nxf.GrJzOrFJNr/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.GrJzOrFJNr/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary
-sample contains 105119483 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.GrJzOrFJNr/ctat_genome_lib_build_dir -J /tmp/nxf.GrJzOrFJNr/1173_PCB_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction -O /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4
-parsing fusion evidence: /tmp/nxf.GrJzOrFJNr/1173_PCB_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.GrJzOrFJNr/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes
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[1060000], rate=51166.53/min -building interval tree based on /tmp/nxf.GrJzOrFJNr/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes
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[1060000], rate=51043.34/min -building interval tree based on /tmp/nxf.GrJzOrFJNr/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.12 min).
-mapping reads to genes
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[1050000], rate=49645.39/min -building interval tree based on /tmp/nxf.GrJzOrFJNr/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes
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[1050000], rate=46425.94/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.GrJzOrFJNr/ctat_genome_lib_build_dir --filt_file /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-parsing /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.
6000000.00 reads per min processed...
6000000.00 reads per min processed...
4500000.00 reads per min processed...
4000000.00 reads per min processed...
3750000.00 reads per min processed...
3272727.27 reads per min processed...
3230769.23 reads per min processed...
3200000.00 reads per min processed...
3176470.59 reads per min processed...
3000000.00 reads per min processed...
3000000.00 reads per min processed...
3000000.00 reads per min processed...
3000000.00 reads per min processed...
3000000.00 reads per min processed...
3000000.00 reads per min processed...
3000000.00 reads per min processed...
3090909.09 reads per min processed...
3176470.59 reads per min processed...
3166666.67 reads per min processed...
3243243.24 reads per min processed...
3230769.23 reads per min processed...
3219512.20 reads per min processed...
3209302.33 reads per min processed...
3200000.00 reads per min processed...
3191489.36 reads per min processed...
3183673.47 reads per min processed...
3176470.59 reads per min processed...
done.
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion
-parsing fusion evidence: /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.GrJzOrFJNr/1173_PCB_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.GrJzOrFJNr/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -1065110.081859
EM: Round [1] log likelihood: -1064967.384019
EM: Round [2] log likelihood: -1064916.626142
EM: Round [3] log likelihood: -1064893.111069
EM: Round [4] log likelihood: -1064880.814897
EM: Round [5] log likelihood: -1064873.909153
EM: Round [6] log likelihood: -1064869.810424
EM: Round [7] log likelihood: -1064867.253145
EM: Round [8] log likelihood: -1064865.581480
EM: Round [9] log likelihood: -1064864.441128
EM: Round [10] log likelihood: -1064863.633212
EM: Round [11] log likelihood: -1064863.041740
EM: Round [12] log likelihood: -1064862.596403
EM: Round [13] log likelihood: -1064862.252945
EM: Round [14] log likelihood: -1064861.982498
EM: Round [15] log likelihood: -1064861.765618
EM: Round [16] log likelihood: -1064861.588836
EM: Round [17] log likelihood: -1064861.442590
EM: Round [18] log likelihood: -1064861.319961
EM: Round [19] log likelihood: -1064861.215848
EM: Round [20] log likelihood: -1064861.126438
EM: Round [21] log likelihood: -1064861.048842
EM: Round [22] log likelihood: -1064860.980846
EM: Round [23] log likelihood: -1064860.920734
EM: Round [24] log likelihood: -1064860.867161
EM: Round [25] log likelihood: -1064860.819067
EM: Round [26] log likelihood: -1064860.775605
EM: Round [27] log likelihood: -1064860.736092
EM: Round [28] log likelihood: -1064860.699975
EM: Round [29] log likelihood: -1064860.666802
EM: Round [30] log likelihood: -1064860.636198
EM: Round [31] log likelihood: -1064860.607854
EM: Round [32] log likelihood: -1064860.581508
EM: Round [33] log likelihood: -1064860.556943
EM: Round [34] log likelihood: -1064860.533970
EM: Round [35] log likelihood: -1064860.512431
EM: Round [36] log likelihood: -1064860.492189
EM: Round [37] log likelihood: -1064860.473125
EM: Round [38] log likelihood: -1064860.455135
EM: Round [39] log likelihood: -1064860.438130
EM: Round [40] log likelihood: -1064860.422030
EM: Round [41] log likelihood: -1064860.406763
EM: Round [42] log likelihood: -1064860.392269
EM: Round [43] log likelihood: -1064860.378490
EM: Round [44] log likelihood: -1064860.365378
EM: Round [45] log likelihood: -1064860.352886
EM: Round [46] log likelihood: -1064860.340975
EM: Round [47] log likelihood: -1064860.329607
EM: Round [48] log likelihood: -1064860.318749
EM: Round [49] log likelihood: -1064860.308370
EM: Round [50] log likelihood: -1064860.298443
EM: Round [51] log likelihood: -1064860.288941
EM: Round [52] log likelihood: -1064860.279841
EM: Round [53] log likelihood: -1064860.271121
EM: Round [54] log likelihood: -1064860.262761
EM: Round [55] log likelihood: -1064860.254742
EM: Round [56] log likelihood: -1064860.247047
EM: Round [57] log likelihood: -1064860.239659
EM: Round [58] log likelihood: -1064860.232564
EM: Round [59] log likelihood: -1064860.225747
EM: Round [60] log likelihood: -1064860.219195
EM: Round [61] log likelihood: -1064860.212895
EM: Round [62] log likelihood: -1064860.206837
EM: Round [63] log likelihood: -1064860.201008
EM: Round [64] log likelihood: -1064860.195399
EM: Round [65] log likelihood: -1064860.190001
EM: Round [66] log likelihood: -1064860.184803
EM: Round [67] log likelihood: -1064860.179797
EM: Round [68] log likelihood: -1064860.174975
EM: Round [69] log likelihood: -1064860.170329
EM: Round [70] log likelihood: -1064860.165852
EM: Round [71] log likelihood: -1064860.161537
EM: Round [72] log likelihood: -1064860.157377
EM: Round [73] log likelihood: -1064860.153366
EM: Round [74] log likelihood: -1064860.149497
EM: Round [75] log likelihood: -1064860.145766
EM: Round [76] log likelihood: -1064860.142167
EM: Round [77] log likelihood: -1064860.138695
EM: Round [78] log likelihood: -1064860.135344
EM: Round [79] log likelihood: -1064860.132110
EM: Round [80] log likelihood: -1064860.128988
EM: Round [81] log likelihood: -1064860.125975
EM: Round [82] log likelihood: -1064860.123065
EM: Round [83] log likelihood: -1064860.120256
EM: Round [84] log likelihood: -1064860.117543
EM: Round [85] log likelihood: -1064860.114923
EM: Round [86] log likelihood: -1064860.112392
EM: Round [87] log likelihood: -1064860.109948
EM: Round [88] log likelihood: -1064860.107586
EM: Round [89] log likelihood: -1064860.105304
EM: Round [90] log likelihood: -1064860.103099
EM: Round [91] log likelihood: -1064860.100968
EM: Round [92] log likelihood: -1064860.098909
EM: Round [93] log likelihood: -1064860.096919
EM: Round [94] log likelihood: -1064860.094995
EM: Round [95] log likelihood: -1064860.093135
EM: Round [96] log likelihood: -1064860.091338
EM: Round [97] log likelihood: -1064860.089599
EM: Round [98] log likelihood: -1064860.087919
EM: Round [99] log likelihood: -1064860.086294
EM: Round [100] log likelihood: -1064860.084723
EM: Round [101] log likelihood: -1064860.083203
EM: Round [102] log likelihood: -1064860.081733
EM: Round [103] log likelihood: -1064860.080312
EM: Round [104] log likelihood: -1064860.078937
EM: Round [105] log likelihood: -1064860.077607
EM: Round [106] log likelihood: -1064860.076321
EM: Round [107] log likelihood: -1064860.075076
EM: Round [108] log likelihood: -1064860.073872
EM: Round [109] log likelihood: -1064860.072707
EM: Round [110] log likelihood: -1064860.071580
EM: Round [111] log likelihood: -1064860.070490
EM: Round [112] log likelihood: -1064860.069435
EM: Round [113] log likelihood: -1064860.068414
EM: Round [114] log likelihood: -1064860.067426
EM: Round [115] log likelihood: -1064860.066469
EM: Round [116] log likelihood: -1064860.065544
EM: Round [117] log likelihood: -1064860.064648
EM: Round [118] log likelihood: -1064860.063781
EM: Round [119] log likelihood: -1064860.062942
EM: Round [120] log likelihood: -1064860.062130
EM: Round [121] log likelihood: -1064860.061344
EM: Round [122] log likelihood: -1064860.060583
EM: Round [123] log likelihood: -1064860.059846
EM: Round [124] log likelihood: -1064860.059133
EM: Round [125] log likelihood: -1064860.058442
EM: Round [126] log likelihood: -1064860.057774
EM: Round [127] log likelihood: -1064860.057126
EM: Round [128] log likelihood: -1064860.056500
EM: Round [129] log likelihood: -1064860.055893
EM: Round [130] log likelihood: -1064860.055305
EM: Round [131] log likelihood: -1064860.054737
EM: Round [132] log likelihood: -1064860.054186
EM: Round [133] log likelihood: -1064860.053652
EM: Round [134] log likelihood: -1064860.053136
EM: Round [135] log likelihood: -1064860.052635
EM: Round [136] log likelihood: -1064860.052151
EM: Round [137] log likelihood: -1064860.051682
EM: Round [138] log likelihood: -1064860.051227
EM: Round [139] log likelihood: -1064860.050787
EM: Round [140] log likelihood: -1064860.050361
EM: Round [141] log likelihood: -1064860.049948
EM: Round [142] log likelihood: -1064860.049548
EM: Round [143] log likelihood: -1064860.049161
EM: Round [144] log likelihood: -1064860.048786
EM: Round [145] log likelihood: -1064860.048423
EM: Round [146] log likelihood: -1064860.048071
EM: Round [147] log likelihood: -1064860.047730
EM: Round [148] log likelihood: -1064860.047399
EM: Round [149] log likelihood: -1064860.047079
EM: Round [150] log likelihood: -1064860.046769
EM: Round [151] log likelihood: -1064860.046469
EM: Round [152] log likelihood: -1064860.046178
EM: Round [153] log likelihood: -1064860.045896
EM: Round [154] log likelihood: -1064860.045623
EM: Round [155] log likelihood: -1064860.045359
EM: Round [156] log likelihood: -1064860.045102
EM: Round [157] log likelihood: -1064860.044854
EM: Round [158] log likelihood: -1064860.044613
EM: Round [159] log likelihood: -1064860.044380
EM: Round [160] log likelihood: -1064860.044154
EM: Round [161] log likelihood: -1064860.043935
EM: Round [162] log likelihood: -1064860.043723
EM: Round [163] log likelihood: -1064860.043518
EM: Round [164] log likelihood: -1064860.043319
EM: Round [165] log likelihood: -1064860.043126
EM: Round [166] log likelihood: -1064860.042939
EM: Round [167] log likelihood: -1064860.042758
EM: Round [168] log likelihood: -1064860.042582
EM: Round [169] log likelihood: -1064860.042412
EM: Round [170] log likelihood: -1064860.042247
EM: Round [171] log likelihood: -1064860.042087
EM: Round [172] log likelihood: -1064860.041932
EM: Round [173] log likelihood: -1064860.041782
EM: Round [174] log likelihood: -1064860.041637
EM: Round [175] log likelihood: -1064860.041496
EM: Round [176] log likelihood: -1064860.041359
EM: Round [177] log likelihood: -1064860.041227
EM: Round [178] log likelihood: -1064860.041098
EM: Round [179] log likelihood: -1064860.040974
EM: Round [180] log likelihood: -1064860.040853
EM: Round [181] log likelihood: -1064860.040737
EM: Round [182] log likelihood: -1064860.040623
EM: Round [183] log likelihood: -1064860.040514
EM: Round [184] log likelihood: -1064860.040407
EM: Round [185] log likelihood: -1064860.040304
EM: Round [186] log likelihood: -1064860.040204
EM: Stopping iterations at round 186 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -1064457.851058
EM: Round [1] log likelihood: -1064344.553633
EM: Round [2] log likelihood: -1064303.807345
EM: Round [3] log likelihood: -1064284.772406
EM: Round [4] log likelihood: -1064274.784241
EM: Round [5] log likelihood: -1064269.175999
EM: Round [6] log likelihood: -1064265.857144
EM: Round [7] log likelihood: -1064263.796523
EM: Round [8] log likelihood: -1064262.458030
EM: Round [9] log likelihood: -1064261.551839
EM: Round [10] log likelihood: -1064260.915384
EM: Round [11] log likelihood: -1064260.453982
EM: Round [12] log likelihood: -1064260.110329
EM: Round [13] log likelihood: -1064259.848412
EM: Round [14] log likelihood: -1064259.644787
EM: Round [15] log likelihood: -1064259.483693
EM: Round [16] log likelihood: -1064259.354245
EM: Round [17] log likelihood: -1064259.248737
EM: Round [18] log likelihood: -1064259.161609
EM: Round [19] log likelihood: -1064259.088779
EM: Round [20] log likelihood: -1064259.027205
EM: Round [21] log likelihood: -1064258.974590
EM: Round [22] log likelihood: -1064258.929182
EM: Round [23] log likelihood: -1064258.889629
EM: Round [24] log likelihood: -1064258.854878
EM: Round [25] log likelihood: -1064258.824101
EM: Round [26] log likelihood: -1064258.796640
EM: Round [27] log likelihood: -1064258.771971
EM: Round [28] log likelihood: -1064258.749670
EM: Round [29] log likelihood: -1064258.729394
EM: Round [30] log likelihood: -1064258.710862
EM: Round [31] log likelihood: -1064258.693842
EM: Round [32] log likelihood: -1064258.678141
EM: Round [33] log likelihood: -1064258.663599
EM: Round [34] log likelihood: -1064258.650082
EM: Round [35] log likelihood: -1064258.637476
EM: Round [36] log likelihood: -1064258.625683
EM: Round [37] log likelihood: -1064258.614621
EM: Round [38] log likelihood: -1064258.604219
EM: Round [39] log likelihood: -1064258.594414
EM: Round [40] log likelihood: -1064258.585154
EM: Round [41] log likelihood: -1064258.576391
EM: Round [42] log likelihood: -1064258.568085
EM: Round [43] log likelihood: -1064258.560199
EM: Round [44] log likelihood: -1064258.552701
EM: Round [45] log likelihood: -1064258.545564
EM: Round [46] log likelihood: -1064258.538760
EM: Round [47] log likelihood: -1064258.532269
EM: Round [48] log likelihood: -1064258.526068
EM: Round [49] log likelihood: -1064258.520141
EM: Round [50] log likelihood: -1064258.514469
EM: Round [51] log likelihood: -1064258.509037
EM: Round [52] log likelihood: -1064258.503832
EM: Round [53] log likelihood: -1064258.498842
EM: Round [54] log likelihood: -1064258.494053
EM: Round [55] log likelihood: -1064258.489455
EM: Round [56] log likelihood: -1064258.485040
EM: Round [57] log likelihood: -1064258.480796
EM: Round [58] log likelihood: -1064258.476716
EM: Round [59] log likelihood: -1064258.472791
EM: Round [60] log likelihood: -1064258.469015
EM: Round [61] log likelihood: -1064258.465381
EM: Round [62] log likelihood: -1064258.461881
EM: Round [63] log likelihood: -1064258.458510
EM: Round [64] log likelihood: -1064258.455262
EM: Round [65] log likelihood: -1064258.452132
EM: Round [66] log likelihood: -1064258.449115
EM: Round [67] log likelihood: -1064258.446205
EM: Round [68] log likelihood: -1064258.443399
EM: Round [69] log likelihood: -1064258.440693
EM: Round [70] log likelihood: -1064258.438081
EM: Round [71] log likelihood: -1064258.435561
EM: Round [72] log likelihood: -1064258.433128
EM: Round [73] log likelihood: -1064258.430779
EM: Round [74] log likelihood: -1064258.428512
EM: Round [75] log likelihood: -1064258.426322
EM: Round [76] log likelihood: -1064258.424207
EM: Round [77] log likelihood: -1064258.422164
EM: Round [78] log likelihood: -1064258.420191
EM: Round [79] log likelihood: -1064258.418284
EM: Round [80] log likelihood: -1064258.416441
EM: Round [81] log likelihood: -1064258.414660
EM: Round [82] log likelihood: -1064258.412939
EM: Round [83] log likelihood: -1064258.411275
EM: Round [84] log likelihood: -1064258.409667
EM: Round [85] log likelihood: -1064258.408112
EM: Round [86] log likelihood: -1064258.406608
EM: Round [87] log likelihood: -1064258.405154
EM: Round [88] log likelihood: -1064258.403748
EM: Round [89] log likelihood: -1064258.402388
EM: Round [90] log likelihood: -1064258.401072
EM: Round [91] log likelihood: -1064258.399800
EM: Round [92] log likelihood: -1064258.398569
EM: Round [93] log likelihood: -1064258.397378
EM: Round [94] log likelihood: -1064258.396226
EM: Round [95] log likelihood: -1064258.395111
EM: Round [96] log likelihood: -1064258.394032
EM: Round [97] log likelihood: -1064258.392988
EM: Round [98] log likelihood: -1064258.391978
EM: Round [99] log likelihood: -1064258.391000
EM: Round [100] log likelihood: -1064258.390054
EM: Round [101] log likelihood: -1064258.389138
EM: Round [102] log likelihood: -1064258.388251
EM: Round [103] log likelihood: -1064258.387393
EM: Round [104] log likelihood: -1064258.386563
EM: Round [105] log likelihood: -1064258.385758
EM: Round [106] log likelihood: -1064258.384980
EM: Round [107] log likelihood: -1064258.384226
EM: Round [108] log likelihood: -1064258.383496
EM: Round [109] log likelihood: -1064258.382789
EM: Round [110] log likelihood: -1064258.382105
EM: Round [111] log likelihood: -1064258.381443
EM: Round [112] log likelihood: -1064258.380801
EM: Round [113] log likelihood: -1064258.380180
EM: Round [114] log likelihood: -1064258.379578
EM: Round [115] log likelihood: -1064258.378995
EM: Round [116] log likelihood: -1064258.378431
EM: Round [117] log likelihood: -1064258.377884
EM: Round [118] log likelihood: -1064258.377355
EM: Round [119] log likelihood: -1064258.376842
EM: Round [120] log likelihood: -1064258.376345
EM: Round [121] log likelihood: -1064258.375864
EM: Round [122] log likelihood: -1064258.375398
EM: Round [123] log likelihood: -1064258.374947
EM: Round [124] log likelihood: -1064258.374509
EM: Round [125] log likelihood: -1064258.374086
EM: Round [126] log likelihood: -1064258.373675
EM: Round [127] log likelihood: -1064258.373277
EM: Round [128] log likelihood: -1064258.372892
EM: Round [129] log likelihood: -1064258.372519
EM: Round [130] log likelihood: -1064258.372157
EM: Round [131] log likelihood: -1064258.371807
EM: Round [132] log likelihood: -1064258.371467
EM: Round [133] log likelihood: -1064258.371139
EM: Round [134] log likelihood: -1064258.370820
EM: Round [135] log likelihood: -1064258.370511
EM: Round [136] log likelihood: -1064258.370212
EM: Round [137] log likelihood: -1064258.369922
EM: Round [138] log likelihood: -1064258.369641
EM: Round [139] log likelihood: -1064258.369368
EM: Round [140] log likelihood: -1064258.369105
EM: Round [141] log likelihood: -1064258.368849
EM: Round [142] log likelihood: -1064258.368601
EM: Round [143] log likelihood: -1064258.368361
EM: Round [144] log likelihood: -1064258.368128
EM: Round [145] log likelihood: -1064258.367902
EM: Round [146] log likelihood: -1064258.367684
EM: Round [147] log likelihood: -1064258.367472
EM: Round [148] log likelihood: -1064258.367267
EM: Round [149] log likelihood: -1064258.367068
EM: Round [150] log likelihood: -1064258.366875
EM: Round [151] log likelihood: -1064258.366688
EM: Round [152] log likelihood: -1064258.366506
EM: Round [153] log likelihood: -1064258.366331
EM: Round [154] log likelihood: -1064258.366160
EM: Round [155] log likelihood: -1064258.365995
EM: Round [156] log likelihood: -1064258.365835
EM: Round [157] log likelihood: -1064258.365680
EM: Round [158] log likelihood: -1064258.365530
EM: Round [159] log likelihood: -1064258.365384
EM: Round [160] log likelihood: -1064258.365243
EM: Round [161] log likelihood: -1064258.365106
EM: Round [162] log likelihood: -1064258.364973
EM: Round [163] log likelihood: -1064258.364844
EM: Round [164] log likelihood: -1064258.364720
EM: Round [165] log likelihood: -1064258.364599
EM: Round [166] log likelihood: -1064258.364481
EM: Round [167] log likelihood: -1064258.364368
EM: Round [168] log likelihood: -1064258.364257
EM: Round [169] log likelihood: -1064258.364151
EM: Round [170] log likelihood: -1064258.364047
EM: Round [171] log likelihood: -1064258.363947
EM: Round [172] log likelihood: -1064258.363849
EM: Stopping iterations at round 172 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.GrJzOrFJNr/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.GrJzOrFJNr/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.GrJzOrFJNr/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20
CMD: cp /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 105119483 > /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.GrJzOrFJNr/ctat_genome_lib_build_dir > /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.GrJzOrFJNr/ctat_genome_lib_build_dir --annotate /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.GrJzOrFJNr/ctat_genome_lib_build_dir
-done, see /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.GrJzOrFJNr/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 915, filtered: 7216)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.GrJzOrFJNr/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.GrJzOrFJNr/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [ENSG00000271699.5]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000254485.5]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000245958.6]
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WARNING, no entry stored in dbm for [ENSG00000265437.1]
WARNING, no entry stored in dbm for [ENSG00000250240.6]
WARNING, no entry stored in dbm for [ENSG00000263821.1]
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WARNING, no entry stored in dbm for [ENSG00000201302.1]
WARNING, no entry stored in dbm for [ENSG00000204387.14]
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WARNING, no entry stored in dbm for [ENSG00000261069.3]
WARNING, no entry stored in dbm for [ENSG00000219146.1]
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WARNING, no entry stored in dbm for [ENSG00000216365.2]
WARNING, no entry stored in dbm for [ENSG00000243680.1]
WARNING, no entry stored in dbm for [ENSG00000235656.1]
WARNING, no entry stored in dbm for [ENSG00000236580.1]
WARNING, no entry stored in dbm for [ENSG00000263944.2]
WARNING, no entry stored in dbm for [ENSG00000240767.3]
WARNING, no entry stored in dbm for [ENSG00000204745.4]
WARNING, no entry stored in dbm for [ENSG00000232973.13]
WARNING, no entry stored in dbm for [ENSG00000232104.3]
WARNING, no entry stored in dbm for [ENSG00000258301.3]
WARNING, no entry stored in dbm for [ENSG00000232517.2]
WARNING, no entry stored in dbm for [ENSG00000261879.7]
WARNING, no entry stored in dbm for [ENSG00000279192.1]
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WARNING, no entry stored in dbm for [ENSG00000274985.1]
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WARNING, no entry stored in dbm for [ENSG00000240490.3]
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WARNING, no entry stored in dbm for [ENSG00000286734.1]
WARNING, no entry stored in dbm for [ENSG00000229539.1]
WARNING, no entry stored in dbm for [ENSG00000287263.1]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000228124.1]
WARNING, no entry stored in dbm for [ENSG00000167494.9]
WARNING, no entry stored in dbm for [ENSG00000253604.1]
WARNING, no entry stored in dbm for [ENSG00000131484.4]
WARNING, no entry stored in dbm for [ENSG00000285887.1]
WARNING, no entry stored in dbm for [ENSG00000230606.11]
WARNING, no entry stored in dbm for [ENSG00000270793.1]
WARNING, no entry stored in dbm for [ENSG00000286642.1]
WARNING, no entry stored in dbm for [ENSG00000215914.4]
WARNING, no entry stored in dbm for [ENSG00000189238.6]
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WARNING, no entry stored in dbm for [ENSG00000229140.11]
WARNING, no entry stored in dbm for [ENSG00000241057.2]
WARNING, no entry stored in dbm for [ENSG00000220472.1]
WARNING, no entry stored in dbm for [ENSG00000217289.3]
WARNING, no entry stored in dbm for [ENSG00000269609.6]
WARNING, no entry stored in dbm for [ENSG00000280046.1]
WARNING, no entry stored in dbm for [ENSG00000248323.7]
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WARNING, no entry stored in dbm for [ENSG00000229088.1]
WARNING, no entry stored in dbm for [ENSG00000260440.3]
WARNING, no entry stored in dbm for [ENSG00000111788.10]
WARNING, no entry stored in dbm for [ENSG00000236318.2]
WARNING, no entry stored in dbm for [ENSG00000230109.1]
WARNING, no entry stored in dbm for [ENSG00000258733.6]
WARNING, no entry stored in dbm for [ENSG00000261064.1]
WARNING, no entry stored in dbm for [ENSG00000280809.4]
WARNING, no entry stored in dbm for [ENSG00000225269.3]
WARNING, no entry stored in dbm for [ENSG00000215483.11]
WARNING, no entry stored in dbm for [ENSG00000283945.1]
WARNING, no entry stored in dbm for [ENSG00000236430.1]
WARNING, no entry stored in dbm for [ENSG00000254285.3]
WARNING, no entry stored in dbm for [ENSG00000280344.1]
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WARNING, no entry stored in dbm for [ENSG00000229976.2]
WARNING, no entry stored in dbm for [ENSG00000244398.1]
WARNING, no entry stored in dbm for [ENSG00000236778.8]
WARNING, no entry stored in dbm for [ENSG00000264515.6]
WARNING, no entry stored in dbm for [ENSG00000165874.13]
WARNING, no entry stored in dbm for [ENSG00000280474.1]
WARNING, no entry stored in dbm for [ENSG00000258900.1]
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WARNING, no entry stored in dbm for [ENSG00000248821.1]
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WARNING, no entry stored in dbm for [ENSG00000239521.9]
WARNING, no entry stored in dbm for [ENSG00000245498.7]
WARNING, no entry stored in dbm for [ENSG00000247373.3]
WARNING, no entry stored in dbm for [ENSG00000277741.4]
WARNING, no entry stored in dbm for [ENSG00000277741.4]
WARNING, no entry stored in dbm for [ENSG00000213269.2]
WARNING, no entry stored in dbm for [ENSG00000226210.3]
WARNING, no entry stored in dbm for [ENSG00000234741.8]
WARNING, no entry stored in dbm for [ENSG00000244879.8]
WARNING, no entry stored in dbm for [ENSG00000279631.1]
WARNING, no entry stored in dbm for [ENSG00000214439.4]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000264044.1]
WARNING, no entry stored in dbm for [ENSG00000249459.11]
WARNING, no entry stored in dbm for [ENSG00000214019.2]
WARNING, no entry stored in dbm for [ENSG00000212304.1]
WARNING, no entry stored in dbm for [ENSG00000232015.2]
WARNING, no entry stored in dbm for [ENSG00000237294.1]
WARNING, no entry stored in dbm for [ENSG00000203262.3]
WARNING, no entry stored in dbm for [ENSG00000259683.1]
WARNING, no entry stored in dbm for [ENSG00000258792.4]
WARNING, no entry stored in dbm for [ENSG00000196205.8]
WARNING, no entry stored in dbm for [ENSG00000197575.6]
WARNING, no entry stored in dbm for [ENSG00000284630.1]
WARNING, no entry stored in dbm for [ENSG00000243701.7]
WARNING, no entry stored in dbm for [ENSG00000226950.8]
WARNING, no entry stored in dbm for [ENSG00000285717.1]
WARNING, no entry stored in dbm for [ENSG00000242094.1]
WARNING, no entry stored in dbm for [ENSG00000260261.2]
WARNING, no entry stored in dbm for [ENSG00000253734.2]
WARNING, no entry stored in dbm for [ENSG00000222041.11]
WARNING, no entry stored in dbm for [ENSG00000250778.1]
WARNING, no entry stored in dbm for [ENSG00000232973.13]
WARNING, no entry stored in dbm for [ENSG00000239521.9]
WARNING, no entry stored in dbm for [ENSG00000100058.12]
WARNING, no entry stored in dbm for [ENSG00000224086.6]
WARNING, no entry stored in dbm for [ENSG00000247624.6]
WARNING, no entry stored in dbm for [ENSG00000249252.5]
WARNING, no entry stored in dbm for [ENSG00000213178.3]
WARNING, no entry stored in dbm for [ENSG00000227288.3]
WARNING, no entry stored in dbm for [ENSG00000233652.1]
WARNING, no entry stored in dbm for [ENSG00000225546.6]
WARNING, no entry stored in dbm for [ENSG00000231607.13]
WARNING, no entry stored in dbm for [ENSG00000222041.11]
WARNING, no entry stored in dbm for [ENSG00000285972.1]
WARNING, no entry stored in dbm for [ENSG00000285972.1]
WARNING, no entry stored in dbm for [ENSG00000240498.9]
WARNING, no entry stored in dbm for [ENSG00000255462.1]
WARNING, no entry stored in dbm for [ENSG00000286277.1]
WARNING, no entry stored in dbm for [ENSG00000228906.1]
WARNING, no entry stored in dbm for [ENSG00000228409.6]
WARNING, no entry stored in dbm for [ENSG00000288061.1]
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WARNING, no entry stored in dbm for [ENSG00000223745.8]
WARNING, no entry stored in dbm for [ENSG00000229212.8]
WARNING, no entry stored in dbm for [ENSG00000204397.9]
WARNING, no entry stored in dbm for [ENSG00000278872.1]
WARNING, no entry stored in dbm for [ENSG00000178722.13]
WARNING, no entry stored in dbm for [ENSG00000234353.2]
WARNING, no entry stored in dbm for [ENSG00000225217.1]
WARNING, no entry stored in dbm for [ENSG00000234647.2]
WARNING, no entry stored in dbm for [ENSG00000232225.6]
WARNING, no entry stored in dbm for [ENSG00000287372.1]
WARNING, no entry stored in dbm for [ENSG00000263647.1]
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WARNING, no entry stored in dbm for [ENSG00000204177.10]
WARNING, no entry stored in dbm for [ENSG00000238153.1]
WARNING, no entry stored in dbm for [ENSG00000278768.2]
WARNING, no entry stored in dbm for [ENSG00000234241.1]
WARNING, no entry stored in dbm for [ENSG00000217027.1]
WARNING, no entry stored in dbm for [ENSG00000249372.1]
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WARNING, no entry stored in dbm for [ENSG00000250208.6]
WARNING, no entry stored in dbm for [ENSG00000287883.1]
WARNING, no entry stored in dbm for [ENSG00000244198.7]
WARNING, no entry stored in dbm for [ENSG00000244198.7]
WARNING, no entry stored in dbm for [ENSG00000288016.1]
WARNING, no entry stored in dbm for [ENSG00000277458.1]
WARNING, no entry stored in dbm for [ENSG00000237238.3]
WARNING, no entry stored in dbm for [ENSG00000229021.2]
WARNING, no entry stored in dbm for [ENSG00000256591.5]
WARNING, no entry stored in dbm for [ENSG00000256591.5]
WARNING, no entry stored in dbm for [ENSG00000250519.7]
WARNING, no entry stored in dbm for [ENSG00000277599.1]
WARNING, no entry stored in dbm for [ENSG00000226043.2]
WARNING, no entry stored in dbm for [ENSG00000231355.1]
WARNING, no entry stored in dbm for [ENSG00000235550.1]
WARNING, no entry stored in dbm for [ENSG00000238013.1]
WARNING, no entry stored in dbm for [ENSG00000232611.1]
WARNING, no entry stored in dbm for [ENSG00000235381.1]
WARNING, no entry stored in dbm for [ENSG00000204802.3]
WARNING, no entry stored in dbm for [ENSG00000231212.1]
WARNING, no entry stored in dbm for [ENSG00000233825.1]
WARNING, no entry stored in dbm for [ENSG00000285599.1]
WARNING, no entry stored in dbm for [ENSG00000237445.2]
WARNING, no entry stored in dbm for [ENSG00000236523.2]
WARNING, no entry stored in dbm for [ENSG00000234156.3]
WARNING, no entry stored in dbm for [ENSG00000271576.1]
WARNING, no entry stored in dbm for [ENSG00000287997.1]
WARNING, no entry stored in dbm for [ENSG00000228434.1]
WARNING, no entry stored in dbm for [ENSG00000237936.1]
WARNING, no entry stored in dbm for [ENSG00000234648.1]
WARNING, no entry stored in dbm for [ENSG00000220685.3]
WARNING, no entry stored in dbm for [ENSG00000272848.2]
WARNING, no entry stored in dbm for [ENSG00000285887.1]
WARNING, no entry stored in dbm for [ENSG00000225069.3]
WARNING, no entry stored in dbm for [ENSG00000227486.2]
WARNING, no entry stored in dbm for [ENSG00000259020.3]
WARNING, no entry stored in dbm for [ENSG00000226310.1]
WARNING, no entry stored in dbm for [ENSG00000196922.10]
WARNING, no entry stored in dbm for [ENSG00000272734.1]
WARNING, no entry stored in dbm for [ENSG00000234665.9]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000287985.1]
WARNING, no entry stored in dbm for [ENSG00000226780.1]
WARNING, no entry stored in dbm for [ENSG00000284964.1]
WARNING, no entry stored in dbm for [ENSG00000284964.1]
WARNING, no entry stored in dbm for [ENSG00000274423.1]
WARNING, no entry stored in dbm for [ENSG00000284964.1]
WARNING, no entry stored in dbm for [ENSG00000213777.5]
WARNING, no entry stored in dbm for [ENSG00000275557.1]
WARNING, no entry stored in dbm for [ENSG00000223779.6]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000224931.4]
WARNING, no entry stored in dbm for [ENSG00000261273.1]
WARNING, no entry stored in dbm for [ENSG00000260413.1]
WARNING, no entry stored in dbm for [ENSG00000229930.1]
WARNING, no entry stored in dbm for [ENSG00000229930.1]
WARNING, no entry stored in dbm for [ENSG00000267305.2]
WARNING, no entry stored in dbm for [ENSG00000219201.4]
WARNING, no entry stored in dbm for [ENSG00000238035.8]
WARNING, no entry stored in dbm for [ENSG00000260121.1]
WARNING, no entry stored in dbm for [ENSG00000166104.15]
WARNING, no entry stored in dbm for [ENSG00000181984.11]
WARNING, no entry stored in dbm for [ENSG00000243199.1]
WARNING, no entry stored in dbm for [ENSG00000267277.1]
WARNING, no entry stored in dbm for [ENSG00000250111.3]
WARNING, no entry stored in dbm for [ENSG00000250159.7]
WARNING, no entry stored in dbm for [ENSG00000259995.1]
WARNING, no entry stored in dbm for [ENSG00000248516.1]
WARNING, no entry stored in dbm for [ENSG00000224479.6]
WARNING, no entry stored in dbm for [ENSG00000286436.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000230606.11]
WARNING, no entry stored in dbm for [ENSG00000276538.1]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000276538.1]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000286545.1]
WARNING, no entry stored in dbm for [ENSG00000248126.1]
WARNING, no entry stored in dbm for [ENSG00000242477.1]
WARNING, no entry stored in dbm for [ENSG00000259418.1]
WARNING, no entry stored in dbm for [ENSG00000259418.1]
WARNING, no entry stored in dbm for [ENSG00000261879.7]
WARNING, no entry stored in dbm for [ENSG00000284731.1]
WARNING, no entry stored in dbm for [ENSG00000284627.1]
WARNING, no entry stored in dbm for [ENSG00000248618.1]
WARNING, no entry stored in dbm for [ENSG00000255565.1]
WARNING, no entry stored in dbm for [ENSG00000217702.3]
WARNING, no entry stored in dbm for [ENSG00000287692.1]
WARNING, no entry stored in dbm for [ENSG00000265261.1]
WARNING, no entry stored in dbm for [ENSG00000225648.5]
WARNING, no entry stored in dbm for [ENSG00000270021.1]
WARNING, no entry stored in dbm for [ENSG00000276115.1]
WARNING, no entry stored in dbm for [ENSG00000257454.1]
WARNING, no entry stored in dbm for [ENSG00000288579.1]
WARNING, no entry stored in dbm for [ENSG00000283544.1]
WARNING, no entry stored in dbm for [ENSG00000250636.1]
WARNING, no entry stored in dbm for [ENSG00000281896.1]
WARNING, no entry stored in dbm for [ENSG00000224316.1]
WARNING, no entry stored in dbm for [ENSG00000259495.3]
WARNING, no entry stored in dbm for [ENSG00000244251.1]
WARNING, no entry stored in dbm for [ENSG00000271018.1]
WARNING, no entry stored in dbm for [ENSG00000224237.1]
WARNING, no entry stored in dbm for [ENSG00000261526.2]
WARNING, no entry stored in dbm for [ENSG00000257453.1]
WARNING, no entry stored in dbm for [ENSG00000236842.1]
WARNING, no entry stored in dbm for [ENSG00000264577.1]
WARNING, no entry stored in dbm for [ENSG00000282890.1]
WARNING, no entry stored in dbm for [ENSG00000068781.21]
WARNING, no entry stored in dbm for [ENSG00000267327.2]
WARNING, no entry stored in dbm for [ENSG00000259952.1]
WARNING, no entry stored in dbm for [ENSG00000243319.7]
WARNING, no entry stored in dbm for [ENSG00000263080.1]
WARNING, no entry stored in dbm for [ENSG00000260517.3]
WARNING, no entry stored in dbm for [ENSG00000260413.1]
WARNING, no entry stored in dbm for [ENSG00000260905.1]
WARNING, no entry stored in dbm for [ENSG00000263345.1]
WARNING, no entry stored in dbm for [ENSG00000269968.1]
WARNING, no entry stored in dbm for [ENSG00000287629.1]
WARNING, no entry stored in dbm for [ENSG00000267623.3]
WARNING, no entry stored in dbm for [ENSG00000279058.2]
WARNING, no entry stored in dbm for [ENSG00000214243.3]
WARNING, no entry stored in dbm for [ENSG00000268163.1]
WARNING, no entry stored in dbm for [ENSG00000279232.2]
* STAR-Fusion complete. See output: /tmp/nxf.GrJzOrFJNr/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)