File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/2730d15d72a00c6ffd4d99534557eb/.command.log
Size
10.7 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/9c8657ae9f5c7af2ec8421867fdc19/1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-fe242a7f-c5b9-4d3f-88fa-f3e739280d3a/45/503758169673f6b79761b4db9d3b84/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/2730d15d72a00c6ffd4d99534557eb/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/2730d15d72a00c6ffd4d99534557eb/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/13b7b6702126358229ebae06ee1d72/1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...

  0%|          | 0/49 [00:00<?, ?it/s]MTAP--CDKN2B-AS1
starfusion
COL1A1--SLC45A4
starfusion
B4GALT6--DSC3
starfusion
arriba
TMEM65--ANXA13
starfusion
arriba
TMEM123--PDGFD
starfusion
PDCD1LG2--DYNC2H1
starfusion
RPSAP52--HMGA2
starfusion
AP001021.1--YAP1
starfusion
YAP1--PDGFD
starfusion
CLTC--VMP1
starfusion
TBC1D13--AL442224.1
starfusion
arriba
AL033504.1--SASH1
starfusion
arriba
CDV3--MT-RNR2
starfusion
TMEM123--DYNC2H1
starfusion
SH3BP5--AC002074.1
starfusion
arriba
YAP1--MUC12
starfusion
TMEM123--YAP1
starfusion
AC239859.5--AC013734.1
starfusion
SRGAP2C--FCGR1B
starfusion
BIRC3--PDGFD
starfusion
TLK2P1--AC110079.1
starfusion
PTPRM--TTC39C
starfusion
EIF4H--COL1A2
starfusion
TPTE--BAGE2
starfusion
TMEFF2--TEX41
starfusion
PDGFD--DYNC2H1
starfusion
TMEM123--PPP2R2C
starfusion
TLK2--AC240565.1
starfusion
FLG-AS1--ARHGAP32
starfusion
TVP23C--CDRT4
starfusion
arriba
NUP214--AP000851.1
arriba
NUP214--AP000851.2
arriba
AC092807.3--DDAH1
arriba
UGDH--UGDH
arriba
RCC2--CPS1
arriba
RCC2--AC012491.1
arriba
AC015911.9--SLFN12L
arriba
AC245297.3--SEC22B3P
arriba
PDCD1LG2--AP001830.2
arriba
PDCD1LG2--MMP7
arriba
LINC01429--SALL4
arriba
AP001347.1--ANKRD20A11P
arriba
AC093815.1--UGT8
arriba
UGT8--UGT8
arriba
GLIS3--PDGFD
arriba
GLIS3--AP003304.1
arriba
PDGFD--MMP20
arriba
PDCD1LG2--OR5AP2
arriba
PDCD1LG2--OR5AR1
arriba

Processing MTAP--CDKN2B-AS1:   0%|          | 0/49 [00:00<?, ?it/s]
Processing MTAP--CDKN2B-AS1:   2%|▏         | 1/49 [00:00<00:05,  9.19it/s]
Processing COL1A1--SLC45A4:   2%|▏         | 1/49 [00:00<00:05,  9.19it/s] 
Processing COL1A1--SLC45A4:   4%|▍         | 2/49 [00:00<00:04,  9.42it/s]
Processing B4GALT6--DSC3:   4%|▍         | 2/49 [00:00<00:04,  9.42it/s]  
Processing B4GALT6--DSC3:   6%|▌         | 3/49 [00:00<00:04,  9.50it/s]
Processing TMEM65--ANXA13:   6%|▌         | 3/49 [00:00<00:04,  9.50it/s]
Processing TMEM65--ANXA13:   8%|▊         | 4/49 [00:00<00:04,  9.54it/s]
Processing TMEM123--PDGFD:   8%|▊         | 4/49 [00:00<00:04,  9.54it/s]
Processing TMEM123--PDGFD:  10%|█         | 5/49 [00:00<00:04,  9.57it/s]
Processing PDCD1LG2--DYNC2H1:  10%|█         | 5/49 [00:00<00:04,  9.57it/s]
Processing PDCD1LG2--DYNC2H1:  12%|█▏        | 6/49 [00:00<00:04,  9.58it/s]
Processing RPSAP52--HMGA2:  12%|█▏        | 6/49 [00:00<00:04,  9.58it/s]   
Processing RPSAP52--HMGA2:  14%|█▍        | 7/49 [00:00<00:04,  9.59it/s]
Processing AP001021.1--YAP1:  14%|█▍        | 7/49 [00:00<00:04,  9.59it/s]
Processing AP001021.1--YAP1:  16%|█▋        | 8/49 [00:00<00:04,  9.59it/s]
Processing YAP1--PDGFD:  16%|█▋        | 8/49 [00:00<00:04,  9.59it/s]     
Processing YAP1--PDGFD:  18%|█▊        | 9/49 [00:00<00:04,  9.60it/s]
Processing CLTC--VMP1:  18%|█▊        | 9/49 [00:00<00:04,  9.60it/s] 
Processing CLTC--VMP1:  20%|██        | 10/49 [00:01<00:04,  9.60it/s]
Processing TBC1D13--AL442224.1:  20%|██        | 10/49 [00:01<00:04,  9.60it/s]
Processing TBC1D13--AL442224.1:  22%|██▏       | 11/49 [00:01<00:03,  9.60it/s]
Processing AL033504.1--SASH1:  22%|██▏       | 11/49 [00:01<00:03,  9.60it/s]  
Processing AL033504.1--SASH1:  24%|██▍       | 12/49 [00:01<00:03,  9.61it/s]
Processing CDV3--MT-RNR2:  24%|██▍       | 12/49 [00:01<00:03,  9.61it/s]    
Processing CDV3--MT-RNR2:  27%|██▋       | 13/49 [00:01<00:03,  9.61it/s]
Processing TMEM123--DYNC2H1:  27%|██▋       | 13/49 [00:01<00:03,  9.61it/s]
Processing TMEM123--DYNC2H1:  29%|██▊       | 14/49 [00:01<00:03,  9.60it/s]
Processing SH3BP5--AC002074.1:  29%|██▊       | 14/49 [00:01<00:03,  9.60it/s]
Processing SH3BP5--AC002074.1:  31%|███       | 15/49 [00:01<00:03,  9.60it/s]
Processing YAP1--MUC12:  31%|███       | 15/49 [00:01<00:03,  9.60it/s]       
Processing YAP1--MUC12:  33%|███▎      | 16/49 [00:01<00:03,  9.60it/s]
Processing TMEM123--YAP1:  33%|███▎      | 16/49 [00:01<00:03,  9.60it/s]
Processing TMEM123--YAP1:  35%|███▍      | 17/49 [00:01<00:03,  9.61it/s]
Processing AC239859.5--AC013734.1:  35%|███▍      | 17/49 [00:01<00:03,  9.61it/s]
Processing AC239859.5--AC013734.1:  37%|███▋      | 18/49 [00:01<00:03,  9.62it/s]
Processing SRGAP2C--FCGR1B:  37%|███▋      | 18/49 [00:01<00:03,  9.62it/s]       
Processing SRGAP2C--FCGR1B:  39%|███▉      | 19/49 [00:01<00:03,  9.61it/s]
Processing BIRC3--PDGFD:  39%|███▉      | 19/49 [00:01<00:03,  9.61it/s]   
Processing BIRC3--PDGFD:  41%|████      | 20/49 [00:02<00:03,  9.62it/s]
Processing TLK2P1--AC110079.1:  41%|████      | 20/49 [00:02<00:03,  9.62it/s]
Processing TLK2P1--AC110079.1:  43%|████▎     | 21/49 [00:02<00:02,  9.62it/s]
Processing PTPRM--TTC39C:  43%|████▎     | 21/49 [00:02<00:02,  9.62it/s]     
Processing PTPRM--TTC39C:  45%|████▍     | 22/49 [00:02<00:02,  9.62it/s]
Processing EIF4H--COL1A2:  45%|████▍     | 22/49 [00:02<00:02,  9.62it/s]
Processing EIF4H--COL1A2:  47%|████▋     | 23/49 [00:02<00:02,  9.62it/s]
Processing TPTE--BAGE2:  47%|████▋     | 23/49 [00:02<00:02,  9.62it/s]  
Processing TPTE--BAGE2:  49%|████▉     | 24/49 [00:02<00:02,  9.61it/s]
Processing TMEFF2--TEX41:  49%|████▉     | 24/49 [00:02<00:02,  9.61it/s]
Processing TMEFF2--TEX41:  51%|█████     | 25/49 [00:02<00:02,  9.61it/s]
Processing PDGFD--DYNC2H1:  51%|█████     | 25/49 [00:02<00:02,  9.61it/s]
Processing PDGFD--DYNC2H1:  53%|█████▎    | 26/49 [00:02<00:02,  9.61it/s]
Processing TMEM123--PPP2R2C:  53%|█████▎    | 26/49 [00:02<00:02,  9.61it/s]
Processing TMEM123--PPP2R2C:  55%|█████▌    | 27/49 [00:02<00:02,  9.62it/s]
Processing TLK2--AC240565.1:  55%|█████▌    | 27/49 [00:02<00:02,  9.62it/s]
Processing TLK2--AC240565.1:  57%|█████▋    | 28/49 [00:02<00:02,  9.61it/s]
Processing FLG-AS1--ARHGAP32:  57%|█████▋    | 28/49 [00:02<00:02,  9.61it/s]
Processing FLG-AS1--ARHGAP32:  59%|█████▉    | 29/49 [00:03<00:02,  9.62it/s]
Processing TVP23C--CDRT4:  59%|█████▉    | 29/49 [00:03<00:02,  9.62it/s]    
Processing TVP23C--CDRT4:  61%|██████    | 30/49 [00:03<00:01,  9.61it/s]
Processing NUP214--AP000851.1:  61%|██████    | 30/49 [00:03<00:01,  9.61it/s]
Processing NUP214--AP000851.1:  63%|██████▎   | 31/49 [00:03<00:01,  9.61it/s]
Processing NUP214--AP000851.2:  63%|██████▎   | 31/49 [00:03<00:01,  9.61it/s]
Processing NUP214--AP000851.2:  65%|██████▌   | 32/49 [00:03<00:01,  9.61it/s]
Processing AC092807.3--DDAH1:  65%|██████▌   | 32/49 [00:03<00:01,  9.61it/s] 
Processing AC092807.3--DDAH1:  67%|██████▋   | 33/49 [00:03<00:01,  9.62it/s]
Processing UGDH--UGDH:  67%|██████▋   | 33/49 [00:03<00:01,  9.62it/s]       
Processing UGDH--UGDH:  69%|██████▉   | 34/49 [00:03<00:01,  9.61it/s]
Processing RCC2--CPS1:  69%|██████▉   | 34/49 [00:03<00:01,  9.61it/s]
Processing RCC2--CPS1:  71%|███████▏  | 35/49 [00:03<00:01,  9.61it/s]
Processing RCC2--AC012491.1:  71%|███████▏  | 35/49 [00:03<00:01,  9.61it/s]
Processing RCC2--AC012491.1:  73%|███████▎  | 36/49 [00:03<00:01,  9.61it/s]
Processing AC015911.9--SLFN12L:  73%|███████▎  | 36/49 [00:03<00:01,  9.61it/s]
Processing AC015911.9--SLFN12L:  76%|███████▌  | 37/49 [00:03<00:01,  9.61it/s]
Processing AC245297.3--SEC22B3P:  76%|███████▌  | 37/49 [00:03<00:01,  9.61it/s]
Processing AC245297.3--SEC22B3P:  78%|███████▊  | 38/49 [00:03<00:01,  9.62it/s]
Processing PDCD1LG2--AP001830.2:  78%|███████▊  | 38/49 [00:03<00:01,  9.62it/s]
Processing PDCD1LG2--AP001830.2:  80%|███████▉  | 39/49 [00:04<00:01,  9.62it/s]
Processing PDCD1LG2--MMP7:  80%|███████▉  | 39/49 [00:04<00:01,  9.62it/s]      
Processing PDCD1LG2--MMP7:  82%|████████▏ | 40/49 [00:04<00:00,  9.61it/s]
Processing LINC01429--SALL4:  82%|████████▏ | 40/49 [00:04<00:00,  9.61it/s]
Processing LINC01429--SALL4:  84%|████████▎ | 41/49 [00:04<00:00,  9.60it/s]
Processing AP001347.1--ANKRD20A11P:  84%|████████▎ | 41/49 [00:04<00:00,  9.60it/s]
Processing AP001347.1--ANKRD20A11P:  86%|████████▌ | 42/49 [00:04<00:00,  9.59it/s]
Processing AC093815.1--UGT8:  86%|████████▌ | 42/49 [00:04<00:00,  9.59it/s]       
Processing AC093815.1--UGT8:  88%|████████▊ | 43/49 [00:04<00:00,  9.60it/s]
Processing UGT8--UGT8:  88%|████████▊ | 43/49 [00:04<00:00,  9.60it/s]      
Processing UGT8--UGT8:  90%|████████▉ | 44/49 [00:04<00:00,  9.60it/s]
Processing GLIS3--PDGFD:  90%|████████▉ | 44/49 [00:04<00:00,  9.60it/s]
Processing GLIS3--PDGFD:  92%|█████████▏| 45/49 [00:04<00:00,  9.60it/s]
Processing GLIS3--AP003304.1:  92%|█████████▏| 45/49 [00:04<00:00,  9.60it/s]
Processing GLIS3--AP003304.1:  94%|█████████▍| 46/49 [00:04<00:00,  9.60it/s]
Processing PDGFD--MMP20:  94%|█████████▍| 46/49 [00:04<00:00,  9.60it/s]     
Processing PDGFD--MMP20:  96%|█████████▌| 47/49 [00:04<00:00,  9.60it/s]
Processing PDCD1LG2--OR5AP2:  96%|█████████▌| 47/49 [00:04<00:00,  9.60it/s]
Processing PDCD1LG2--OR5AP2:  98%|█████████▊| 48/49 [00:05<00:00,  9.60it/s]
Processing PDCD1LG2--OR5AR1:  98%|█████████▊| 48/49 [00:05<00:00,  9.60it/s]
Processing PDCD1LG2--OR5AR1: 100%|██████████| 49/49 [00:05<00:00,  9.61it/s]
Processing PDCD1LG2--OR5AR1: 100%|██████████| 49/49 [00:05<00:00,  9.60it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory