Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/ca4d20e41802bc8c33ea65523f74cb/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/0f4dc1282715214828b2b17471672e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/0f4dc1282715214828b2b17471672e/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/19a2adb1e26fc72e356badf0995a93/1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/df971a5a57f255d39b33c785d80bbb/1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 275834440
[W::hts_idx_load3] The index file is older than the data file: 1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	275834440
Known Splicing Events:	273169087
Partial Novel Splicing Events:	1450386
Novel Splicing Events:	1124155
Filtered Splicing Events:	90812

Total splicing  Junctions:	523940
Known Splicing Junctions:	270800
Partial Novel Splicing Junctions:	151277
Novel Splicing Junctions:	101863

===================================================================
Create BED file ...
Create Interact file ...