File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/de7857b23545efb3b4733997197fb3/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/c7c75e4229a455e8a62b7d155d0d5f/1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/e51ad835f0c54d581e60958136de38/1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/ca4d20e41802bc8c33ea65523f74cb/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/de7857b23545efb3b4733997197fb3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/de7857b23545efb3b4733997197fb3/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 321039884
[W::hts_idx_load3] The index file is older than the data file: 1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	321039884
Known Splicing Events:	318958122
Partial Novel Splicing Events:	1375108
Novel Splicing Events:	644390
Filtered Splicing Events:	62264

Total splicing  Junctions:	548456
Known Splicing Junctions:	286197
Partial Novel Splicing Junctions:	165916
Novel Splicing Junctions:	96343

===================================================================
Create BED file ...
Create Interact file ...