Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/2714d98325cf7fa2920336e6ef2ac5/FFPE_HD789_01_RNA_13_A23T55JLT4_1_R2.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/fd3bc65621aefdb025e36ee69ac6f0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/fd3bc65621aefdb025e36ee69ac6f0/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/2714d98325cf7fa2920336e6ef2ac5/FFPE_HD789_01_RNA_13_A23T55JLT4_1_R1.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory