Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/c7c75e4229a455e8a62b7d155d0d5f/1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/e51ad835f0c54d581e60958136de38/1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/ca4d20e41802bc8c33ea65523f74cb/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/0db26b814bbc6801057744a26353bb/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/0db26b814bbc6801057744a26353bb/.command.run
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: 1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (16048798) splicing reads. 238947 splicing junctions. 175463 known splicing junctions. 63484 novel splicing junctions.
sampling 10% (32097597) splicing reads. 292431 splicing junctions. 189392 known splicing junctions. 103039 novel splicing junctions.
sampling 15% (48146395) splicing reads. 331542 splicing junctions. 197260 known splicing junctions. 134282 novel splicing junctions.
sampling 20% (64195194) splicing reads. 363222 splicing junctions. 202552 known splicing junctions. 160670 novel splicing junctions.
sampling 25% (80243993) splicing reads. 389508 splicing junctions. 206595 known splicing junctions. 182913 novel splicing junctions.
sampling 30% (96292791) splicing reads. 411968 splicing junctions. 209620 known splicing junctions. 202348 novel splicing junctions.
sampling 35% (112341590) splicing reads. 431628 splicing junctions. 212086 known splicing junctions. 219542 novel splicing junctions.
sampling 40% (128390389) splicing reads. 448672 splicing junctions. 214079 known splicing junctions. 234593 novel splicing junctions.
sampling 45% (144439187) splicing reads. 463909 splicing junctions. 215798 known splicing junctions. 248111 novel splicing junctions.
sampling 50% (160487986) splicing reads. 477376 splicing junctions. 217186 known splicing junctions. 260190 novel splicing junctions.
sampling 55% (176536785) splicing reads. 489717 splicing junctions. 218456 known splicing junctions. 271261 novel splicing junctions.
sampling 60% (192585583) splicing reads. 500600 splicing junctions. 219535 known splicing junctions. 281065 novel splicing junctions.
sampling 65% (208634382) splicing reads. 510052 splicing junctions. 220490 known splicing junctions. 289562 novel splicing junctions.
sampling 70% (224683181) splicing reads. 518349 splicing junctions. 221297 known splicing junctions. 297052 novel splicing junctions.
sampling 75% (240731979) splicing reads. 525676 splicing junctions. 221988 known splicing junctions. 303688 novel splicing junctions.
sampling 80% (256780778) splicing reads. 531953 splicing junctions. 222549 known splicing junctions. 309404 novel splicing junctions.
sampling 85% (272829577) splicing reads. 537308 splicing junctions. 223031 known splicing junctions. 314277 novel splicing junctions.
sampling 90% (288878375) splicing reads. 541811 splicing junctions. 223418 known splicing junctions. 318393 novel splicing junctions.
sampling 95% (304927174) splicing reads. 545598 splicing junctions. 223764 known splicing junctions. 321834 novel splicing junctions.
sampling 100% (320975973) splicing reads. 548339 splicing junctions. 224029 known splicing junctions. 324310 novel splicing junctions.
null device 
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