.command.err - Workdir - NFCORE_RNAFUSION:RNAFUSION:STARFUSION_WORKFLOW:STARFUSION (1173_KRT_T1_RNA_SLD_01_A23T55JLT4_1)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/2f96c9081547ddd1f49f87501045ec/.command.err
Size: 21.5 KB
Task: NFCORE_RNAFUSION:RNAFUSION:STARFUSION_WORKFLOW:STARFUSION (1173_KRT_T1_RNA_SLD_01_A23T55JLT4_1)
Attempt
Content

-ctat genome lib [/tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.ZNz2tAfUvQ/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary
-sample contains 10301720 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir  -J /tmp/nxf.ZNz2tAfUvQ/1173_KRT_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction  -O /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.ZNz2tAfUvQ/1173_KRT_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

[10000], rate=66666.67/min 
[20000], rate=109090.91/min 
[30000], rate=105882.35/min 
[40000], rate=120000.00/min 
[50000], rate=103448.28/min 
[60000], rate=116129.03/min 
[70000], rate=113513.51/min 
[80000], rate=120000.00/min 
[90000], rate=110204.08/min 
[100000], rate=117647.06/min 
[110000], rate=115789.47/min 
[120000], rate=110769.23/min 
[130000], rate=113043.48/min 
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[150000], rate=103448.28/min 
[160000], rate=90566.04/min 
[170000], rate=81600.00/min 
[180000], rate=77142.86/min 
[190000], rate=74025.97/min 
[200000], rate=72727.27/min 
[210000], rate=71186.44/min -building interval tree based on /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

[10000], rate=54545.45/min 
[20000], rate=57142.86/min 
[30000], rate=47368.42/min 
[40000], rate=48000.00/min 
[50000], rate=49180.33/min 
[60000], rate=50704.23/min 
[70000], rate=52500.00/min 
[80000], rate=54545.45/min 
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[100000], rate=61855.67/min 
[110000], rate=61682.24/min 
[120000], rate=66666.67/min 
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[140000], rate=70588.24/min 
[150000], rate=71428.57/min 
[160000], rate=72180.45/min 
[170000], rate=72857.14/min 
[180000], rate=74482.76/min 
[190000], rate=74509.80/min 
[200000], rate=73619.63/min 
[210000], rate=72832.37/min 
[220000], rate=69841.27/min -building interval tree based on /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

[10000], rate=60000.00/min 
[20000], rate=52173.91/min 
[30000], rate=51428.57/min 
[40000], rate=54545.45/min 
[50000], rate=53571.43/min 
[60000], rate=50704.23/min 
[70000], rate=53164.56/min 
[80000], rate=52173.91/min 
[90000], rate=51428.57/min 
[100000], rate=52173.91/min 
[110000], rate=52380.95/min 
[120000], rate=53333.33/min 
[130000], rate=55319.15/min 
[140000], rate=57142.86/min 
[150000], rate=58441.56/min 
[160000], rate=60000.00/min 
[170000], rate=60355.03/min 
[180000], rate=59668.51/min 
[190000], rate=60638.30/min 
[200000], rate=61538.46/min 
[210000], rate=61764.71/min -building interval tree based on /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

[10000], rate=35294.12/min 
[20000], rate=38709.68/min 
[30000], rate=43902.44/min 
[40000], rate=43636.36/min 
[50000], rate=43478.26/min 
[60000], rate=46753.25/min 
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[80000], rate=51063.83/min 
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[100000], rate=54545.45/min 
[110000], rate=54098.36/min 
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[150000], rate=52325.58/min 
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[170000], rate=51515.15/min 
[180000], rate=51674.64/min 
[190000], rate=52777.78/min 
[200000], rate=52631.58/min 
[210000], rate=51851.85/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 6000000.00 reads per min processed...  
 4000000.00 reads per min processed...  
 3600000.00 reads per min processed...  
 3428571.43 reads per min processed...  
 4285714.29 reads per min processed...  
 4000000.00 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.ZNz2tAfUvQ/1173_KRT_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -15095.802447
EM: Round [1] log likelihood: -15025.152275
EM: Round [2] log likelihood: -14997.863036
EM: Round [3] log likelihood: -14984.608704
EM: Round [4] log likelihood: -14977.568994
EM: Round [5] log likelihood: -14973.652787
EM: Round [6] log likelihood: -14971.388231
EM: Round [7] log likelihood: -14970.026260
EM: Round [8] log likelihood: -14969.173945
EM: Round [9] log likelihood: -14968.619629
EM: Round [10] log likelihood: -14968.245859
EM: Round [11] log likelihood: -14967.985315
EM: Round [12] log likelihood: -14967.798121
EM: Round [13] log likelihood: -14967.659896
EM: Round [14] log likelihood: -14967.555279
EM: Round [15] log likelihood: -14967.474324
EM: Round [16] log likelihood: -14967.410425
EM: Round [17] log likelihood: -14967.359089
EM: Round [18] log likelihood: -14967.317197
EM: Round [19] log likelihood: -14967.282539
EM: Round [20] log likelihood: -14967.253517
EM: Round [21] log likelihood: -14967.228959
EM: Round [22] log likelihood: -14967.207987
EM: Round [23] log likelihood: -14967.189935
EM: Round [24] log likelihood: -14967.174289
EM: Round [25] log likelihood: -14967.160646
EM: Round [26] log likelihood: -14967.148686
EM: Round [27] log likelihood: -14967.138155
EM: Round [28] log likelihood: -14967.128842
EM: Round [29] log likelihood: -14967.120577
EM: Round [30] log likelihood: -14967.113218
EM: Round [31] log likelihood: -14967.106646
EM: Round [32] log likelihood: -14967.100762
EM: Round [33] log likelihood: -14967.095480
EM: Round [34] log likelihood: -14967.090728
EM: Round [35] log likelihood: -14967.086444
EM: Round [36] log likelihood: -14967.082574
EM: Round [37] log likelihood: -14967.079072
EM: Round [38] log likelihood: -14967.075898
EM: Round [39] log likelihood: -14967.073016
EM: Round [40] log likelihood: -14967.070394
EM: Round [41] log likelihood: -14967.068008
EM: Round [42] log likelihood: -14967.065831
EM: Round [43] log likelihood: -14967.063843
EM: Round [44] log likelihood: -14967.062026
EM: Round [45] log likelihood: -14967.060362
EM: Round [46] log likelihood: -14967.058837
EM: Round [47] log likelihood: -14967.057438
EM: Round [48] log likelihood: -14967.056153
EM: Round [49] log likelihood: -14967.054972
EM: Round [50] log likelihood: -14967.053884
EM: Round [51] log likelihood: -14967.052883
EM: Round [52] log likelihood: -14967.051959
EM: Round [53] log likelihood: -14967.051106
EM: Round [54] log likelihood: -14967.050319
EM: Round [55] log likelihood: -14967.049590
EM: Round [56] log likelihood: -14967.048917
EM: Round [57] log likelihood: -14967.048293
EM: Round [58] log likelihood: -14967.047714
EM: Round [59] log likelihood: -14967.047178
EM: Round [60] log likelihood: -14967.046680
EM: Round [61] log likelihood: -14967.046217
EM: Round [62] log likelihood: -14967.045787
EM: Round [63] log likelihood: -14967.045388
EM: Round [64] log likelihood: -14967.045015
EM: Round [65] log likelihood: -14967.044668
EM: Round [66] log likelihood: -14967.044345
EM: Round [67] log likelihood: -14967.044044
EM: Round [68] log likelihood: -14967.043762
EM: Round [69] log likelihood: -14967.043500
EM: Round [70] log likelihood: -14967.043254
EM: Round [71] log likelihood: -14967.043024
EM: Round [72] log likelihood: -14967.042810
EM: Round [73] log likelihood: -14967.042609
EM: Round [74] log likelihood: -14967.042420
EM: Round [75] log likelihood: -14967.042244
EM: Round [76] log likelihood: -14967.042078
EM: Round [77] log likelihood: -14967.041923
EM: Round [78] log likelihood: -14967.041777
EM: Round [79] log likelihood: -14967.041640
EM: Round [80] log likelihood: -14967.041512
EM: Round [81] log likelihood: -14967.041391
EM: Round [82] log likelihood: -14967.041277
EM: Round [83] log likelihood: -14967.041170
EM: Round [84] log likelihood: -14967.041069
EM: Round [85] log likelihood: -14967.040974
EM: Stopping iterations at round 85 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -15081.485637
EM: Round [1] log likelihood: -15016.830730
EM: Round [2] log likelihood: -14993.000783
EM: Round [3] log likelihood: -14981.741176
EM: Round [4] log likelihood: -14975.839163
EM: Round [5] log likelihood: -14972.569490
EM: Round [6] log likelihood: -14970.677930
EM: Round [7] log likelihood: -14969.537328
EM: Round [8] log likelihood: -14968.821227
EM: Round [9] log likelihood: -14968.354164
EM: Round [10] log likelihood: -14968.038643
EM: Round [11] log likelihood: -14967.818577
EM: Round [12] log likelihood: -14967.660587
EM: Round [13] log likelihood: -14967.544154
EM: Round [14] log likelihood: -14967.456290
EM: Round [15] log likelihood: -14967.388549
EM: Round [16] log likelihood: -14967.335306
EM: Round [17] log likelihood: -14967.292726
EM: Round [18] log likelihood: -14967.258146
EM: Round [19] log likelihood: -14967.229677
EM: Round [20] log likelihood: -14967.205956
EM: Round [21] log likelihood: -14967.185981
EM: Round [22] log likelihood: -14967.169008
EM: Round [23] log likelihood: -14967.154467
EM: Round [24] log likelihood: -14967.141925
EM: Round [25] log likelihood: -14967.131039
EM: Round [26] log likelihood: -14967.121542
EM: Round [27] log likelihood: -14967.113215
EM: Round [28] log likelihood: -14967.105886
EM: Round [29] log likelihood: -14967.099409
EM: Round [30] log likelihood: -14967.093667
EM: Round [31] log likelihood: -14967.088561
EM: Round [32] log likelihood: -14967.084008
EM: Round [33] log likelihood: -14967.079938
EM: Round [34] log likelihood: -14967.076291
EM: Round [35] log likelihood: -14967.073015
EM: Round [36] log likelihood: -14967.070068
EM: Round [37] log likelihood: -14967.067411
EM: Round [38] log likelihood: -14967.065011
EM: Round [39] log likelihood: -14967.062840
EM: Round [40] log likelihood: -14967.060873
EM: Round [41] log likelihood: -14967.059087
EM: Round [42] log likelihood: -14967.057465
EM: Round [43] log likelihood: -14967.055989
EM: Round [44] log likelihood: -14967.054644
EM: Round [45] log likelihood: -14967.053417
EM: Round [46] log likelihood: -14967.052296
EM: Round [47] log likelihood: -14967.051271
EM: Round [48] log likelihood: -14967.050333
EM: Round [49] log likelihood: -14967.049474
EM: Round [50] log likelihood: -14967.048686
EM: Round [51] log likelihood: -14967.047963
EM: Round [52] log likelihood: -14967.047298
EM: Round [53] log likelihood: -14967.046687
EM: Round [54] log likelihood: -14967.046124
EM: Round [55] log likelihood: -14967.045607
EM: Round [56] log likelihood: -14967.045129
EM: Round [57] log likelihood: -14967.044689
EM: Round [58] log likelihood: -14967.044283
EM: Round [59] log likelihood: -14967.043908
EM: Round [60] log likelihood: -14967.043561
EM: Round [61] log likelihood: -14967.043241
EM: Round [62] log likelihood: -14967.042944
EM: Round [63] log likelihood: -14967.042670
EM: Round [64] log likelihood: -14967.042416
EM: Round [65] log likelihood: -14967.042180
EM: Round [66] log likelihood: -14967.041962
EM: Round [67] log likelihood: -14967.041760
EM: Round [68] log likelihood: -14967.041572
EM: Round [69] log likelihood: -14967.041397
EM: Round [70] log likelihood: -14967.041236
EM: Round [71] log likelihood: -14967.041085
EM: Round [72] log likelihood: -14967.040946
EM: Round [73] log likelihood: -14967.040816
EM: Round [74] log likelihood: -14967.040695
EM: Round [75] log likelihood: -14967.040583
EM: Round [76] log likelihood: -14967.040478
EM: Round [77] log likelihood: -14967.040381
EM: Stopping iterations at round 77 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 10301720 > /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir > /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir --annotate /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir
-done, see /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 161, filtered: 1318)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [ENSG00000253628.2]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
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WARNING, no entry stored in dbm for [IGH.g@-ext]
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WARNING, no entry stored in dbm for [ENSG00000215417.13]
WARNING, no entry stored in dbm for [ENSG00000205853.12]
WARNING, no entry stored in dbm for [ENSG00000228393.4]
WARNING, no entry stored in dbm for [ENSG00000205312.8]
WARNING, no entry stored in dbm for [ENSG00000235927.4]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000285761.1]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000214176.9]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000214176.9]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000236124.1]
WARNING, no entry stored in dbm for [ENSG00000230459.3]
WARNING, no entry stored in dbm for [ENSG00000225465.10]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000279801.1]
WARNING, no entry stored in dbm for [ENSG00000231793.5]
WARNING, no entry stored in dbm for [ENSG00000259456.4]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000248926.1]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000225546.6]
WARNING, no entry stored in dbm for [ENSG00000266969.1]
WARNING, no entry stored in dbm for [ENSG00000224905.7]
WARNING, no entry stored in dbm for [ENSG00000215559.8]
WARNING, no entry stored in dbm for [ENSG00000261971.8]
WARNING, no entry stored in dbm for [ENSG00000237742.7]
WARNING, no entry stored in dbm for [ENSG00000235008.1]
WARNING, no entry stored in dbm for [ENSG00000230869.1]
WARNING, no entry stored in dbm for [ENSG00000273225.4]
WARNING, no entry stored in dbm for [ENSG00000257829.1]
WARNING, no entry stored in dbm for [ENSG00000188002.10]
WARNING, no entry stored in dbm for [ENSG00000235583.2]
WARNING, no entry stored in dbm for [ENSG00000259146.4]
WARNING, no entry stored in dbm for [ENSG00000214243.3]
WARNING, no entry stored in dbm for [ENSG00000277283.1]


	* STAR-Fusion complete.  See output: /tmp/nxf.ZNz2tAfUvQ/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)