Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/91718f7d736f3046cc82c50d8bceb0/1173_KRT_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/2f96c9081547ddd1f49f87501045ec/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/2f96c9081547ddd1f49f87501045ec/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/05baeadfd5d70542157711e3849daf/1173_KRT_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/91718f7d736f3046cc82c50d8bceb0/1173_KRT_T1_RNA_SLD_01_A23T55JLT4_1_2.fastp.fastq.gz ==> STAGING COMPLETE (6 inputs) -ctat genome lib [/tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir] validates. CMD: mkdir -p /tmp/nxf.ZNz2tAfUvQ/./_starF_checkpoints CMD: mkdir -p /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary -sample contains 10301720 rnaseq fragments * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir -J /tmp/nxf.ZNz2tAfUvQ/1173_KRT_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction -O /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 -parsing fusion evidence: /tmp/nxf.ZNz2tAfUvQ/1173_KRT_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction -building interval tree based on /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.10 min). -mapping reads to genes [10000], rate=66666.67/min [20000], rate=109090.91/min [30000], rate=105882.35/min [40000], rate=120000.00/min [50000], rate=103448.28/min [60000], rate=116129.03/min [70000], rate=113513.51/min [80000], rate=120000.00/min [90000], rate=110204.08/min [100000], rate=117647.06/min [110000], rate=115789.47/min [120000], rate=110769.23/min [130000], rate=113043.48/min [140000], rate=112000.00/min [150000], rate=103448.28/min [160000], rate=90566.04/min [170000], rate=81600.00/min [180000], rate=77142.86/min [190000], rate=74025.97/min [200000], rate=72727.27/min [210000], rate=71186.44/min -building interval tree based on /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.10 min). -mapping reads to genes [10000], rate=54545.45/min [20000], rate=57142.86/min [30000], rate=47368.42/min [40000], rate=48000.00/min [50000], rate=49180.33/min [60000], rate=50704.23/min [70000], rate=52500.00/min [80000], rate=54545.45/min [90000], rate=59340.66/min [100000], rate=61855.67/min [110000], rate=61682.24/min [120000], rate=66666.67/min [130000], rate=66666.67/min [140000], rate=70588.24/min [150000], rate=71428.57/min [160000], rate=72180.45/min [170000], rate=72857.14/min [180000], rate=74482.76/min [190000], rate=74509.80/min [200000], rate=73619.63/min [210000], rate=72832.37/min [220000], rate=69841.27/min -building interval tree based on /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.10 min). -mapping reads to genes [10000], rate=60000.00/min [20000], rate=52173.91/min [30000], rate=51428.57/min [40000], rate=54545.45/min [50000], rate=53571.43/min [60000], rate=50704.23/min [70000], rate=53164.56/min [80000], rate=52173.91/min [90000], rate=51428.57/min [100000], rate=52173.91/min [110000], rate=52380.95/min [120000], rate=53333.33/min [130000], rate=55319.15/min [140000], rate=57142.86/min [150000], rate=58441.56/min [160000], rate=60000.00/min [170000], rate=60355.03/min [180000], rate=59668.51/min [190000], rate=60638.30/min [200000], rate=61538.46/min [210000], rate=61764.71/min -building interval tree based on /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.10 min). -mapping reads to genes [10000], rate=35294.12/min [20000], rate=38709.68/min [30000], rate=43902.44/min [40000], rate=43636.36/min [50000], rate=43478.26/min [60000], rate=46753.25/min [70000], rate=49411.76/min [80000], rate=51063.83/min [90000], rate=52941.18/min [100000], rate=54545.45/min [110000], rate=54098.36/min [120000], rate=53731.34/min [130000], rate=53793.10/min [140000], rate=53503.18/min [150000], rate=52325.58/min [160000], rate=51891.89/min [170000], rate=51515.15/min [180000], rate=51674.64/min [190000], rate=52777.78/min [200000], rate=52631.58/min [210000], rate=51851.85/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir --filt_file /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -parsing /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info. 6000000.00 reads per min processed... 4000000.00 reads per min processed... 3600000.00 reads per min processed... 3428571.43 reads per min processed... 4285714.29 reads per min processed... 4000000.00 reads per min processed... done. * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion -parsing fusion evidence: /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -outputting fusion candidates to file: /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.ZNz2tAfUvQ/1173_KRT_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion CMD: mkdir -p /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir EM: Starting log likelihood: -15095.802447 EM: Round [1] log likelihood: -15025.152275 EM: Round [2] log likelihood: -14997.863036 EM: Round [3] log likelihood: -14984.608704 EM: Round [4] log likelihood: -14977.568994 EM: Round [5] log likelihood: -14973.652787 EM: Round [6] log likelihood: -14971.388231 EM: Round [7] log likelihood: -14970.026260 EM: Round [8] log likelihood: -14969.173945 EM: Round [9] log likelihood: -14968.619629 EM: Round [10] log likelihood: -14968.245859 EM: Round [11] log likelihood: -14967.985315 EM: Round [12] log likelihood: -14967.798121 EM: Round [13] log likelihood: -14967.659896 EM: Round [14] log likelihood: -14967.555279 EM: Round [15] log likelihood: -14967.474324 EM: Round [16] log likelihood: -14967.410425 EM: Round [17] log likelihood: -14967.359089 EM: Round [18] log likelihood: -14967.317197 EM: Round [19] log likelihood: -14967.282539 EM: Round [20] log likelihood: -14967.253517 EM: Round [21] log likelihood: -14967.228959 EM: Round [22] log likelihood: -14967.207987 EM: Round [23] log likelihood: -14967.189935 EM: Round [24] log likelihood: -14967.174289 EM: Round [25] log likelihood: -14967.160646 EM: Round [26] log likelihood: -14967.148686 EM: Round [27] log likelihood: -14967.138155 EM: Round [28] log likelihood: -14967.128842 EM: Round [29] log likelihood: -14967.120577 EM: Round [30] log likelihood: -14967.113218 EM: Round [31] log likelihood: -14967.106646 EM: Round [32] log likelihood: -14967.100762 EM: Round [33] log likelihood: -14967.095480 EM: Round [34] log likelihood: -14967.090728 EM: Round [35] log likelihood: -14967.086444 EM: Round [36] log likelihood: -14967.082574 EM: Round [37] log likelihood: -14967.079072 EM: Round [38] log likelihood: -14967.075898 EM: Round [39] log likelihood: -14967.073016 EM: Round [40] log likelihood: -14967.070394 EM: Round [41] log likelihood: -14967.068008 EM: Round [42] log likelihood: -14967.065831 EM: Round [43] log likelihood: -14967.063843 EM: Round [44] log likelihood: -14967.062026 EM: Round [45] log likelihood: -14967.060362 EM: Round [46] log likelihood: -14967.058837 EM: Round [47] log likelihood: -14967.057438 EM: Round [48] log likelihood: -14967.056153 EM: Round [49] log likelihood: -14967.054972 EM: Round [50] log likelihood: -14967.053884 EM: Round [51] log likelihood: -14967.052883 EM: Round [52] log likelihood: -14967.051959 EM: Round [53] log likelihood: -14967.051106 EM: Round [54] log likelihood: -14967.050319 EM: Round [55] log likelihood: -14967.049590 EM: Round [56] log likelihood: -14967.048917 EM: Round [57] log likelihood: -14967.048293 EM: Round [58] log likelihood: -14967.047714 EM: Round [59] log likelihood: -14967.047178 EM: Round [60] log likelihood: -14967.046680 EM: Round [61] log likelihood: -14967.046217 EM: Round [62] log likelihood: -14967.045787 EM: Round [63] log likelihood: -14967.045388 EM: Round [64] log likelihood: -14967.045015 EM: Round [65] log likelihood: -14967.044668 EM: Round [66] log likelihood: -14967.044345 EM: Round [67] log likelihood: -14967.044044 EM: Round [68] log likelihood: -14967.043762 EM: Round [69] log likelihood: -14967.043500 EM: Round [70] log likelihood: -14967.043254 EM: Round [71] log likelihood: -14967.043024 EM: Round [72] log likelihood: -14967.042810 EM: Round [73] log likelihood: -14967.042609 EM: Round [74] log likelihood: -14967.042420 EM: Round [75] log likelihood: -14967.042244 EM: Round [76] log likelihood: -14967.042078 EM: Round [77] log likelihood: -14967.041923 EM: Round [78] log likelihood: -14967.041777 EM: Round [79] log likelihood: -14967.041640 EM: Round [80] log likelihood: -14967.041512 EM: Round [81] log likelihood: -14967.041391 EM: Round [82] log likelihood: -14967.041277 EM: Round [83] log likelihood: -14967.041170 EM: Round [84] log likelihood: -14967.041069 EM: Round [85] log likelihood: -14967.040974 EM: Stopping iterations at round 85 due to insufficient improvement in likelihood. EM: Starting log likelihood: -15081.485637 EM: Round [1] log likelihood: -15016.830730 EM: Round [2] log likelihood: -14993.000783 EM: Round [3] log likelihood: -14981.741176 EM: Round [4] log likelihood: -14975.839163 EM: Round [5] log likelihood: -14972.569490 EM: Round [6] log likelihood: -14970.677930 EM: Round [7] log likelihood: -14969.537328 EM: Round [8] log likelihood: -14968.821227 EM: Round [9] log likelihood: -14968.354164 EM: Round [10] log likelihood: -14968.038643 EM: Round [11] log likelihood: -14967.818577 EM: Round [12] log likelihood: -14967.660587 EM: Round [13] log likelihood: -14967.544154 EM: Round [14] log likelihood: -14967.456290 EM: Round [15] log likelihood: -14967.388549 EM: Round [16] log likelihood: -14967.335306 EM: Round [17] log likelihood: -14967.292726 EM: Round [18] log likelihood: -14967.258146 EM: Round [19] log likelihood: -14967.229677 EM: Round [20] log likelihood: -14967.205956 EM: Round [21] log likelihood: -14967.185981 EM: Round [22] log likelihood: -14967.169008 EM: Round [23] log likelihood: -14967.154467 EM: Round [24] log likelihood: -14967.141925 EM: Round [25] log likelihood: -14967.131039 EM: Round [26] log likelihood: -14967.121542 EM: Round [27] log likelihood: -14967.113215 EM: Round [28] log likelihood: -14967.105886 EM: Round [29] log likelihood: -14967.099409 EM: Round [30] log likelihood: -14967.093667 EM: Round [31] log likelihood: -14967.088561 EM: Round [32] log likelihood: -14967.084008 EM: Round [33] log likelihood: -14967.079938 EM: Round [34] log likelihood: -14967.076291 EM: Round [35] log likelihood: -14967.073015 EM: Round [36] log likelihood: -14967.070068 EM: Round [37] log likelihood: -14967.067411 EM: Round [38] log likelihood: -14967.065011 EM: Round [39] log likelihood: -14967.062840 EM: Round [40] log likelihood: -14967.060873 EM: Round [41] log likelihood: -14967.059087 EM: Round [42] log likelihood: -14967.057465 EM: Round [43] log likelihood: -14967.055989 EM: Round [44] log likelihood: -14967.054644 EM: Round [45] log likelihood: -14967.053417 EM: Round [46] log likelihood: -14967.052296 EM: Round [47] log likelihood: -14967.051271 EM: Round [48] log likelihood: -14967.050333 EM: Round [49] log likelihood: -14967.049474 EM: Round [50] log likelihood: -14967.048686 EM: Round [51] log likelihood: -14967.047963 EM: Round [52] log likelihood: -14967.047298 EM: Round [53] log likelihood: -14967.046687 EM: Round [54] log likelihood: -14967.046124 EM: Round [55] log likelihood: -14967.045607 EM: Round [56] log likelihood: -14967.045129 EM: Round [57] log likelihood: -14967.044689 EM: Round [58] log likelihood: -14967.044283 EM: Round [59] log likelihood: -14967.043908 EM: Round [60] log likelihood: -14967.043561 EM: Round [61] log likelihood: -14967.043241 EM: Round [62] log likelihood: -14967.042944 EM: Round [63] log likelihood: -14967.042670 EM: Round [64] log likelihood: -14967.042416 EM: Round [65] log likelihood: -14967.042180 EM: Round [66] log likelihood: -14967.041962 EM: Round [67] log likelihood: -14967.041760 EM: Round [68] log likelihood: -14967.041572 EM: Round [69] log likelihood: -14967.041397 EM: Round [70] log likelihood: -14967.041236 EM: Round [71] log likelihood: -14967.041085 EM: Round [72] log likelihood: -14967.040946 EM: Round [73] log likelihood: -14967.040816 EM: Round [74] log likelihood: -14967.040695 EM: Round [75] log likelihood: -14967.040583 EM: Round [76] log likelihood: -14967.040478 EM: Round [77] log likelihood: -14967.040381 EM: Stopping iterations at round 77 due to insufficient improvement in likelihood. CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20 CMD: cp /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged CMD: ln -sf /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered * Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 10301720 > /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM * Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir > /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir --annotate /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot * Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir -done, see /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass * Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir -filter_likely_RT_artifacts: (pass: 161, filtered: 1318) * Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001 * Running CMD: cp /tmp/nxf.ZNz2tAfUvQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv * Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.ZNz2tAfUvQ/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv WARNING, no entry stored in dbm for [ENSG00000253628.2] WARNING, no entry stored in dbm for [IGL-.g@-ext] WARNING, no entry stored in dbm for [ENSG00000219392.1] WARNING, no entry stored in dbm for [IGL.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [ENSG00000242808.10] WARNING, no entry stored in dbm for [ENSG00000257759.2] WARNING, no entry stored in dbm for [ENSG00000259198.1] WARNING, no entry stored in dbm for [ENSG00000227681.5] WARNING, no entry stored in dbm for [ENSG00000257122.5] WARNING, no entry stored in dbm for [ENSG00000257784.2] WARNING, no entry stored in dbm for [ENSG00000213820.3] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGL.g@-ext] WARNING, no entry stored in dbm for [IGL.g@-ext] WARNING, no entry stored in dbm for [ENSG00000234722.5] WARNING, no entry stored in dbm for [ENSG00000259198.1] WARNING, no entry stored in dbm for [ENSG00000245532.9] WARNING, no entry stored in dbm for [ENSG00000224272.2] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [ENSG00000215417.13] WARNING, no entry stored in dbm for [ENSG00000205853.12] WARNING, no entry stored in dbm for [ENSG00000228393.4] WARNING, no entry stored in dbm for [ENSG00000205312.8] WARNING, no entry stored in dbm for [ENSG00000235927.4] WARNING, no entry stored in dbm for [IGL.g@-ext] WARNING, no entry stored in dbm for [ENSG00000285761.1] WARNING, no entry stored in dbm for [IGL.g@-ext] WARNING, no entry stored in dbm for [ENSG00000214176.9] WARNING, no entry stored in dbm for [IGL.g@-ext] WARNING, no entry stored in dbm for [ENSG00000214176.9] WARNING, no entry stored in dbm for [IGL-.g@-ext] WARNING, no entry stored in dbm for [IGL-.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [ENSG00000236124.1] WARNING, no entry stored in dbm for [ENSG00000230459.3] WARNING, no entry stored in dbm for [ENSG00000225465.10] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGL-.g@-ext] WARNING, no entry stored in dbm for [ENSG00000279801.1] WARNING, no entry stored in dbm for [ENSG00000231793.5] WARNING, no entry stored in dbm for [ENSG00000259456.4] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [ENSG00000248926.1] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [ENSG00000225546.6] WARNING, no entry stored in dbm for [ENSG00000266969.1] WARNING, no entry stored in dbm for [ENSG00000224905.7] WARNING, no entry stored in dbm for [ENSG00000215559.8] WARNING, no entry stored in dbm for [ENSG00000261971.8] WARNING, no entry stored in dbm for [ENSG00000237742.7] WARNING, no entry stored in dbm for [ENSG00000235008.1] WARNING, no entry stored in dbm for [ENSG00000230869.1] WARNING, no entry stored in dbm for [ENSG00000273225.4] WARNING, no entry stored in dbm for [ENSG00000257829.1] WARNING, no entry stored in dbm for [ENSG00000188002.10] WARNING, no entry stored in dbm for [ENSG00000235583.2] WARNING, no entry stored in dbm for [ENSG00000259146.4] WARNING, no entry stored in dbm for [ENSG00000214243.3] WARNING, no entry stored in dbm for [ENSG00000277283.1] * STAR-Fusion complete. See output: /tmp/nxf.ZNz2tAfUvQ/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)