.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_TO_MULTIQC (1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/761cf4a3fdeb147d5b03b2463722d4/.command.log
Size: 1.1 KB
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_TO_MULTIQC (1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/761cf4a3fdeb147d5b03b2463722d4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/7d63b3acc2b139e838d72428fc55d6/1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2/1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2_full_basic_stats.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/761cf4a3fdeb147d5b03b2463722d4/.command.run
==> STAGING COMPLETE (3 inputs)

Processing SeqTools file: 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2_full_basic_stats.tsv
Warning: scipy not available. GC bias calculation will be simplified.
Successfully converted 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2_full_basic_stats.tsv to 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2_seqtool_mqc.tsv
  Samples: 1
  SeqTools (general stats) columns: 18
  Metrics: reads, frac_unmapped, frac_dupes, unique_reads, frac_reads_on_target, frac_pairs_on_target, frac_reads_off_target, frac_pairs_off_target, reads_on_target, pairs_on_target, reads_off_target, pairs_off_target, mean_depth, q50_depth, frac_bases_gt30x, frac_bases_gt100x, n_q30, gc_bias