File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/7cbbe6be90cac6526ed1a180f8a997/.command.out
Size
1.8 KB
Attempt
  AIH curated blacklist: matched 7 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 372
  Pass (FILTER=PASS): 57 (15.3%)
  Fail (FILTER=FAIL): 315 (84.7%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 7
  All 7 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high): 112
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 58
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 21
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 20
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 17
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 17
  confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 11
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 7
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 7
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 7
  confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 6
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 5
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 4
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 4
  confidence_below_min(low<high): 4

Breakdown by confidence:
  high: 57 pass, 8 fail (total: 65)
  low: 0 pass, 125 fail (total: 125)
  medium: 0 pass, 182 fail (total: 182)
Arriba filter: 372 rows -> 57 PASS; wrote 1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2.arriba.fusions.filtered.tsv and 1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2.arriba.fusions.filtered_pass_only.tsv
Summary written to: 1173_NWE_T1_RNA_SLD_01_A23T55JLT4_2.arriba.fusions.filter_summary.txt