Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/3038510651668deab395c1455a8171/1173_Q7O_T1_RNA_SLD_01_A23T55JLT4_2.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/97ff9bce02fd3d4dd5ea33d0d6094a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/97ff9bce02fd3d4dd5ea33d0d6094a/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory