File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/d323520a02d12c33df121ef7c134a2/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 11:40:51
                             Started mapping on |	Jun 08 11:47:20
                                    Finished on |	Jun 08 12:39:08
       Mapping speed, Million of reads per hour |	340.94

                          Number of input reads |	294346551
                      Average input read length |	244
                                    UNIQUE READS:
                   Uniquely mapped reads number |	278872850
                        Uniquely mapped reads % |	94.74%
                          Average mapped length |	243.03
                       Number of splices: Total |	294405720
            Number of splices: Annotated (sjdb) |	288914724
                       Number of splices: GT/AG |	291258963
                       Number of splices: GC/AG |	1861847
                       Number of splices: AT/AC |	221565
               Number of splices: Non-canonical |	1063345
                      Mismatch rate per base, % |	0.21%
                         Deletion rate per base |	0.02%
                        Deletion average length |	1.86
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.65
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	10170382
             % of reads mapped to multiple loci |	3.46%
        Number of reads mapped to too many loci |	541235
             % of reads mapped to too many loci |	0.18%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	4321200
                 % of reads unmapped: too short |	1.47%
                Number of reads unmapped: other |	440884
                     % of reads unmapped: other |	0.15%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%