Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/9eb47f29f38d4f244b28962a614084/fi_workdir/1173_9C_T1_RNA_SLD_01_A23T55JLT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/ef546887d29357c800bde056ba80bf/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/ef546887d29357c800bde056ba80bf/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 12206
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 12206
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:12206
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 3 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
ABR--AC007846.1 HAVANA gene 13137 38490 . + . FI_gene_label "ABR^ENSG00000159842.15" ; ID "ABR--AC007846.1^ABR^ENSG00000159842.15" ; ccdsid "CCDS11000.1" ; exon_id "ENSE00001248383.4" ; exon_number 1 ; gene_id "ABR--AC007846.1^ABR^ENSG00000159842.15" ; gene_name ABR ; gene_type protein_coding ; havana_gene "OTTHUMG00000090313.18" ; havana_transcript "OTTHUMT00000437249.2" ; hgnc_id "HGNC:81" ; level 2 ; orig_coord_info "chr17,1108934,1109068,-" ; protein_id "ENSP00000291107.2" ; tag basic CCDS ; transcript_id "ABR--AC007846.1^ENST00000291107.6" ; transcript_name "ABR-201" ; transcript_support_level 2 ; transcript_type protein_coding
ABR--AC007846.1 HAVANA mRNA 13137 38490 . + . FI_gene_label "ABR^ENSG00000159842.15" ; ID "ABR--AC007846.1^ENST00000291107.6" ; Parent "ABR--AC007846.1^ABR^ENSG00000159842.15" ; ccdsid "CCDS11000.1" ; exon_id "ENSE00001248383.4" ; exon_number 1 ; gene_id "ABR--AC007846.1^ABR^ENSG00000159842.15" ; gene_name ABR ; gene_type protein_coding ; havana_gene "OTTHUMG00000090313.18" ; havana_transcript "OTTHUMT00000437249.2" ; hgnc_id "HGNC:81" ; level 2 ; orig_coord_info "chr17,1108934,1109068,-" ; protein_id "ENSP00000291107.2" ; tag basic CCDS ; transcript_id "ABR--AC007846.1^ENST00000291107.6" ; transcript_name "ABR-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
BATF2--HPS3 HAVANA gene 8816 29579 . + . FI_gene_label "HPS3^ENSG00000163755.9" ; ID "BATF2--HPS3^HPS3^ENSG00000163755.9" ; ccdsid "CCDS3140.1" ; exon_id "ENSE00001913355.1" ; exon_number 1 ; gene_id "BATF2--HPS3^HPS3^ENSG00000163755.9" ; gene_name HPS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159548.2" ; havana_transcript "OTTHUMT00000356151.2" ; hgnc_id "HGNC:15597" ; level 2 ; orig_coord_info "chr3,149129724,149129940,+" ; protein_id "ENSP00000296051.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BATF2--HPS3^ENST00000296051.7" ; transcript_name "HPS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
BATF2--HPS3 HAVANA mRNA 8816 29579 . + . FI_gene_label "HPS3^ENSG00000163755.9" ; ID "BATF2--HPS3^ENST00000296051.7" ; Parent "BATF2--HPS3^HPS3^ENSG00000163755.9" ; ccdsid "CCDS3140.1" ; exon_id "ENSE00001913355.1" ; exon_number 1 ; gene_id "BATF2--HPS3^HPS3^ENSG00000163755.9" ; gene_name HPS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159548.2" ; havana_transcript "OTTHUMT00000356151.2" ; hgnc_id "HGNC:15597" ; level 2 ; orig_coord_info "chr3,149129724,149129940,+" ; protein_id "ENSP00000296051.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BATF2--HPS3^ENST00000296051.7" ; transcript_name "HPS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BATF2--HPS3 HAVANA gene 1048 5815 . + . FI_gene_label "BATF2^ENSG00000168062.10" ; ID "BATF2--HPS3^BATF2^ENSG00000168062.10" ; ccdsid "CCDS8087.1" ; exon_id "ENSE00001408542.2" ; exon_number 1 ; gene_id "BATF2--HPS3^BATF2^ENSG00000168062.10" ; gene_name BATF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165633.4" ; havana_transcript "OTTHUMT00000385478.3" ; hgnc_id "HGNC:25163" ; level 2 ; orig_coord_info "chr11,64996876,64996914,-" ; protein_id "ENSP00000301887.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BATF2--HPS3^ENST00000301887.9" ; transcript_name "BATF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
BATF2--HPS3 HAVANA mRNA 1048 5815 . + . FI_gene_label "BATF2^ENSG00000168062.10" ; ID "BATF2--HPS3^ENST00000301887.9" ; Parent "BATF2--HPS3^BATF2^ENSG00000168062.10" ; ccdsid "CCDS8087.1" ; exon_id "ENSE00001408542.2" ; exon_number 1 ; gene_id "BATF2--HPS3^BATF2^ENSG00000168062.10" ; gene_name BATF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165633.4" ; havana_transcript "OTTHUMT00000385478.3" ; hgnc_id "HGNC:25163" ; level 2 ; orig_coord_info "chr11,64996876,64996914,-" ; protein_id "ENSP00000301887.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BATF2--HPS3^ENST00000301887.9" ; transcript_name "BATF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C16orf72--AC022168.1 HAVANA gene 1001 19524 . + . FI_gene_label "C16orf72^ENSG00000182831.12" ; ID "C16orf72--AC022168.1^C16orf72^ENSG00000182831.12" ; ccdsid "CCDS10538.1" ; exon_id "ENSE00001324927.7" ; exon_number 1 ; gene_id "C16orf72--AC022168.1^C16orf72^ENSG00000182831.12" ; gene_name C16orf72 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178147.5" ; havana_transcript "OTTHUMT00000440760.3" ; hgnc_id "HGNC:30103" ; level 2 ; orig_coord_info "chr16,9092045,9092270,+" ; protein_id "ENSP00000331720.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C16orf72--AC022168.1^ENST00000327827.12" ; transcript_name "C16orf72-201" ; transcript_support_level 1 ; transcript_type protein_coding
C16orf72--AC022168.1 HAVANA mRNA 1001 19524 . + . FI_gene_label "C16orf72^ENSG00000182831.12" ; ID "C16orf72--AC022168.1^ENST00000327827.12" ; Parent "C16orf72--AC022168.1^C16orf72^ENSG00000182831.12" ; ccdsid "CCDS10538.1" ; exon_id "ENSE00001324927.7" ; exon_number 1 ; gene_id "C16orf72--AC022168.1^C16orf72^ENSG00000182831.12" ; gene_name C16orf72 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178147.5" ; havana_transcript "OTTHUMT00000440760.3" ; hgnc_id "HGNC:30103" ; level 2 ; orig_coord_info "chr16,9092045,9092270,+" ; protein_id "ENSP00000331720.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C16orf72--AC022168.1^ENST00000327827.12" ; transcript_name "C16orf72-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CASC3--KRT15 HAVANA gene 18719 23864 . + . FI_gene_label "KRT15^ENSG00000171346.16" ; ID "CASC3--KRT15^KRT15^ENSG00000171346.16" ; ccdsid "CCDS11398.1" ; exon_id "ENSE00001849719.2" ; exon_number 1 ; gene_id "CASC3--KRT15^KRT15^ENSG00000171346.16" ; gene_name KRT15 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133435.6" ; havana_transcript "OTTHUMT00000257301.2" ; hgnc_id "HGNC:6421" ; level 2 ; orig_coord_info "chr17,41518330,41518827,-" ; protein_id "ENSP00000254043.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CASC3--KRT15^ENST00000254043.8" ; transcript_name "KRT15-201" ; transcript_support_level 1 ; transcript_type protein_coding
CASC3--KRT15 HAVANA mRNA 18719 23864 . + . FI_gene_label "KRT15^ENSG00000171346.16" ; ID "CASC3--KRT15^ENST00000254043.8" ; Parent "CASC3--KRT15^KRT15^ENSG00000171346.16" ; ccdsid "CCDS11398.1" ; exon_id "ENSE00001849719.2" ; exon_number 1 ; gene_id "CASC3--KRT15^KRT15^ENSG00000171346.16" ; gene_name KRT15 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133435.6" ; havana_transcript "OTTHUMT00000257301.2" ; hgnc_id "HGNC:6421" ; level 2 ; orig_coord_info "chr17,41518330,41518827,-" ; protein_id "ENSP00000254043.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CASC3--KRT15^ENST00000254043.8" ; transcript_name "KRT15-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CASC3--KRT15 HAVANA gene 1220 12079 . + . FI_gene_label "CASC3^ENSG00000108349.17" ; ID "CASC3--KRT15^CASC3^ENSG00000108349.17" ; ccdsid "CCDS11362.1" ; exon_id "ENSE00001306828.6" ; exon_number 1 ; gene_id "CASC3--KRT15^CASC3^ENSG00000108349.17" ; gene_name CASC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133323.6" ; havana_transcript "OTTHUMT00000257127.4" ; hgnc_id "HGNC:17040" ; level 2 ; orig_coord_info "chr17,40140549,40140779,+" ; protein_id "ENSP00000264645.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CASC3--KRT15^ENST00000264645.12" ; transcript_name "CASC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
CASC3--KRT15 HAVANA mRNA 1220 12079 . + . FI_gene_label "CASC3^ENSG00000108349.17" ; ID "CASC3--KRT15^ENST00000264645.12" ; Parent "CASC3--KRT15^CASC3^ENSG00000108349.17" ; ccdsid "CCDS11362.1" ; exon_id "ENSE00001306828.6" ; exon_number 1 ; gene_id "CASC3--KRT15^CASC3^ENSG00000108349.17" ; gene_name CASC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133323.6" ; havana_transcript "OTTHUMT00000257127.4" ; hgnc_id "HGNC:17040" ; level 2 ; orig_coord_info "chr17,40140549,40140779,+" ; protein_id "ENSP00000264645.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CASC3--KRT15^ENST00000264645.12" ; transcript_name "CASC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CPNE4--ACP3 HAVANA gene 32505 45388 . + . FI_gene_label "ACP3^ENSG00000014257.16" ; ID "CPNE4--ACP3^ACP3^ENSG00000014257.16" ; ccdsid "CCDS3073.1" ; exon_id "ENSE00001922674.1" ; exon_number 1 ; gene_id "CPNE4--ACP3^ACP3^ENSG00000014257.16" ; gene_name ACP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159650.6" ; havana_transcript "OTTHUMT00000356699.3" ; hgnc_id "HGNC:125" ; level 2 ; orig_coord_info "chr3,132317457,132317576,+" ; protein_id "ENSP00000337471.5" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "CPNE4--ACP3^ENST00000336375.10" ; transcript_name "ACP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
CPNE4--ACP3 HAVANA mRNA 32505 45388 . + . FI_gene_label "ACP3^ENSG00000014257.16" ; ID "CPNE4--ACP3^ENST00000336375.10" ; Parent "CPNE4--ACP3^ACP3^ENSG00000014257.16" ; ccdsid "CCDS3073.1" ; exon_id "ENSE00001922674.1" ; exon_number 1 ; gene_id "CPNE4--ACP3^ACP3^ENSG00000014257.16" ; gene_name ACP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159650.6" ; havana_transcript "OTTHUMT00000356699.3" ; hgnc_id "HGNC:125" ; level 2 ; orig_coord_info "chr3,132317457,132317576,+" ; protein_id "ENSP00000337471.5" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "CPNE4--ACP3^ENST00000336375.10" ; transcript_name "ACP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CPNE4--ACP3 ENSEMBL gene 6503 29459 . + . FI_gene_label "CPNE4^ENSG00000196353.11" ; ID "CPNE4--ACP3^CPNE4^ENSG00000196353.11" ; ccdsid "CCDS3072.1" ; exon_id "ENSE00003536115.1" ; exon_number 2 ; gene_id "CPNE4--ACP3^CPNE4^ENSG00000196353.11" ; gene_name CPNE4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159631.14" ; hgnc_id "HGNC:2317" ; level 3 ; orig_coord_info "chr3,131905264,131905443,-" ; protein_id "ENSP00000411904.1" ; tag basic appris_principal_1 CCDS ; transcript_id "CPNE4--ACP3^ENST00000429747.5" ; transcript_name "CPNE4-201" ; transcript_support_level 1 ; transcript_type protein_coding
CPNE4--ACP3 ENSEMBL mRNA 6503 29459 . + . FI_gene_label "CPNE4^ENSG00000196353.11" ; ID "CPNE4--ACP3^ENST00000429747.5" ; Parent "CPNE4--ACP3^CPNE4^ENSG00000196353.11" ; ccdsid "CCDS3072.1" ; exon_id "ENSE00003536115.1" ; exon_number 2 ; gene_id "CPNE4--ACP3^CPNE4^ENSG00000196353.11" ; gene_name CPNE4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159631.14" ; hgnc_id "HGNC:2317" ; level 3 ; orig_coord_info "chr3,131905264,131905443,-" ; protein_id "ENSP00000411904.1" ; tag basic appris_principal_1 CCDS ; transcript_id "CPNE4--ACP3^ENST00000429747.5" ; transcript_name "CPNE4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DYNC2H1--MIR3976HG HAVANA gene 1113 93000 . + . FI_gene_label "DYNC2H1^ENSG00000187240.16" ; ID "DYNC2H1--MIR3976HG^DYNC2H1^ENSG00000187240.16" ; exon_id "ENSE00002164953.1" ; exon_number 1 ; gene_id "DYNC2H1--MIR3976HG^DYNC2H1^ENSG00000187240.16" ; gene_name DYNC2H1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165941.6" ; havana_transcript "OTTHUMT00000387197.1" ; hgnc_id "HGNC:2962" ; level 2 ; orig_coord_info "chr11,103109575,103109769,+" ; protein_id "ENSP00000334021.7" ; tag basic ; transcript_id "DYNC2H1--MIR3976HG^ENST00000334267.11" ; transcript_name "DYNC2H1-201" ; transcript_support_level 1 ; transcript_type protein_coding
DYNC2H1--MIR3976HG HAVANA mRNA 1113 93000 . + . FI_gene_label "DYNC2H1^ENSG00000187240.16" ; ID "DYNC2H1--MIR3976HG^ENST00000334267.11" ; Parent "DYNC2H1--MIR3976HG^DYNC2H1^ENSG00000187240.16" ; exon_id "ENSE00002164953.1" ; exon_number 1 ; gene_id "DYNC2H1--MIR3976HG^DYNC2H1^ENSG00000187240.16" ; gene_name DYNC2H1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165941.6" ; havana_transcript "OTTHUMT00000387197.1" ; hgnc_id "HGNC:2962" ; level 2 ; orig_coord_info "chr11,103109575,103109769,+" ; protein_id "ENSP00000334021.7" ; tag basic ; transcript_id "DYNC2H1--MIR3976HG^ENST00000334267.11" ; transcript_name "DYNC2H1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ERBB2--CWC25 HAVANA gene 5981 25761 . + . FI_gene_label "ERBB2^ENSG00000141736.14" ; ID "ERBB2--CWC25^ERBB2^ENSG00000141736.14" ; ccdsid "CCDS32642.1" ; exon_id "ENSE00003909903.1" ; exon_number 1 ; gene_id "ERBB2--CWC25^ERBB2^ENSG00000141736.14" ; gene_name ERBB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179300.3" ; havana_transcript "OTTHUMT00000445621.2" ; hgnc_id "HGNC:3430" ; level 2 ; orig_coord_info "chr17,39700239,39700311,+" ; protein_id "ENSP00000269571.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ERBB2--CWC25^ENST00000269571.10" ; transcript_name "ERBB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ERBB2--CWC25 HAVANA mRNA 5981 25761 . + . FI_gene_label "ERBB2^ENSG00000141736.14" ; ID "ERBB2--CWC25^ENST00000269571.10" ; Parent "ERBB2--CWC25^ERBB2^ENSG00000141736.14" ; ccdsid "CCDS32642.1" ; exon_id "ENSE00003909903.1" ; exon_number 1 ; gene_id "ERBB2--CWC25^ERBB2^ENSG00000141736.14" ; gene_name ERBB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179300.3" ; havana_transcript "OTTHUMT00000445621.2" ; hgnc_id "HGNC:3430" ; level 2 ; orig_coord_info "chr17,39700239,39700311,+" ; protein_id "ENSP00000269571.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ERBB2--CWC25^ENST00000269571.10" ; transcript_name "ERBB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ERBB2--CWC25 HAVANA gene 30204 41478 . + . FI_gene_label "CWC25^ENSG00000273559.5" ; ID "ERBB2--CWC25^CWC25^ENSG00000273559.5" ; ccdsid "CCDS45663.1" ; exon_id "ENSE00003754146.2" ; exon_number 1 ; gene_id "ERBB2--CWC25^CWC25^ENSG00000273559.5" ; gene_name CWC25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188505.2" ; havana_transcript "OTTHUMT00000477464.2" ; hgnc_id "HGNC:25989" ; level 2 ; orig_coord_info "chr17,38825166,38825183,-" ; protein_id "ENSP00000478070.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ERBB2--CWC25^ENST00000614790.5" ; transcript_name "CWC25-202" ; transcript_support_level 1 ; transcript_type protein_coding
ERBB2--CWC25 HAVANA mRNA 30204 41478 . + . FI_gene_label "CWC25^ENSG00000273559.5" ; ID "ERBB2--CWC25^ENST00000614790.5" ; Parent "ERBB2--CWC25^CWC25^ENSG00000273559.5" ; ccdsid "CCDS45663.1" ; exon_id "ENSE00003754146.2" ; exon_number 1 ; gene_id "ERBB2--CWC25^CWC25^ENSG00000273559.5" ; gene_name CWC25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188505.2" ; havana_transcript "OTTHUMT00000477464.2" ; hgnc_id "HGNC:25989" ; level 2 ; orig_coord_info "chr17,38825166,38825183,-" ; protein_id "ENSP00000478070.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ERBB2--CWC25^ENST00000614790.5" ; transcript_name "CWC25-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ERBB2--JUP HAVANA gene 5981 25761 . + . FI_gene_label "ERBB2^ENSG00000141736.14" ; ID "ERBB2--JUP^ERBB2^ENSG00000141736.14" ; ccdsid "CCDS32642.1" ; exon_id "ENSE00003909903.1" ; exon_number 1 ; gene_id "ERBB2--JUP^ERBB2^ENSG00000141736.14" ; gene_name ERBB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179300.3" ; havana_transcript "OTTHUMT00000445621.2" ; hgnc_id "HGNC:3430" ; level 2 ; orig_coord_info "chr17,39700239,39700311,+" ; protein_id "ENSP00000269571.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ERBB2--JUP^ENST00000269571.10" ; transcript_name "ERBB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ERBB2--JUP HAVANA mRNA 5981 25761 . + . FI_gene_label "ERBB2^ENSG00000141736.14" ; ID "ERBB2--JUP^ENST00000269571.10" ; Parent "ERBB2--JUP^ERBB2^ENSG00000141736.14" ; ccdsid "CCDS32642.1" ; exon_id "ENSE00003909903.1" ; exon_number 1 ; gene_id "ERBB2--JUP^ERBB2^ENSG00000141736.14" ; gene_name ERBB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179300.3" ; havana_transcript "OTTHUMT00000445621.2" ; hgnc_id "HGNC:3430" ; level 2 ; orig_coord_info "chr17,39700239,39700311,+" ; protein_id "ENSP00000269571.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ERBB2--JUP^ENST00000269571.10" ; transcript_name "ERBB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ERBB2--JUP HAVANA gene 30403 45336 . + . FI_gene_label "JUP^ENSG00000173801.17" ; ID "ERBB2--JUP^JUP^ENSG00000173801.17" ; ccdsid "CCDS11407.1" ; exon_id "ENSE00002523385.1" ; exon_number 2 ; gene_id "ERBB2--JUP^JUP^ENSG00000173801.17" ; gene_name JUP ; gene_type protein_coding ; havana_gene "OTTHUMG00000133494.10" ; havana_transcript "OTTHUMT00000257399.1" ; hgnc_id "HGNC:6207" ; level 2 ; orig_coord_info "chr17,41771647,41771854,-" ; protein_id "ENSP00000311113.5" ; tag basic appris_principal_1 CCDS ; transcript_id "ERBB2--JUP^ENST00000310706.9" ; transcript_name "JUP-201" ; transcript_support_level 1 ; transcript_type protein_coding
ERBB2--JUP HAVANA mRNA 30403 45336 . + . FI_gene_label "JUP^ENSG00000173801.17" ; ID "ERBB2--JUP^ENST00000310706.9" ; Parent "ERBB2--JUP^JUP^ENSG00000173801.17" ; ccdsid "CCDS11407.1" ; exon_id "ENSE00002523385.1" ; exon_number 2 ; gene_id "ERBB2--JUP^JUP^ENSG00000173801.17" ; gene_name JUP ; gene_type protein_coding ; havana_gene "OTTHUMG00000133494.10" ; havana_transcript "OTTHUMT00000257399.1" ; hgnc_id "HGNC:6207" ; level 2 ; orig_coord_info "chr17,41771647,41771854,-" ; protein_id "ENSP00000311113.5" ; tag basic appris_principal_1 CCDS ; transcript_id "ERBB2--JUP^ENST00000310706.9" ; transcript_name "JUP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FMNL1--AC130686.1 ENSEMBL gene 1634 18470 . + . FI_gene_label "FMNL1^ENSG00000184922.14" ; ID "FMNL1--AC130686.1^FMNL1^ENSG00000184922.14" ; exon_id "ENSE00001337921.3" ; exon_number 1 ; gene_id "FMNL1--AC130686.1^FMNL1^ENSG00000184922.14" ; gene_name FMNL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180196.5" ; hgnc_id "HGNC:1212" ; level 3 ; orig_coord_info "chr17,45222125,45222187,+" ; protein_id "ENSP00000327442.4" ; tag basic ; transcript_id "FMNL1--AC130686.1^ENST00000328118.7" ; transcript_name "FMNL1-201" ; transcript_support_level 2 ; transcript_type protein_coding
FMNL1--AC130686.1 ENSEMBL mRNA 1634 18470 . + . FI_gene_label "FMNL1^ENSG00000184922.14" ; ID "FMNL1--AC130686.1^ENST00000328118.7" ; Parent "FMNL1--AC130686.1^FMNL1^ENSG00000184922.14" ; exon_id "ENSE00001337921.3" ; exon_number 1 ; gene_id "FMNL1--AC130686.1^FMNL1^ENSG00000184922.14" ; gene_name FMNL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180196.5" ; hgnc_id "HGNC:1212" ; level 3 ; orig_coord_info "chr17,45222125,45222187,+" ; protein_id "ENSP00000327442.4" ; tag basic ; transcript_id "FMNL1--AC130686.1^ENST00000328118.7" ; transcript_name "FMNL1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
FMNL1--EIF1 ENSEMBL gene 1634 18470 . + . FI_gene_label "FMNL1^ENSG00000184922.14" ; ID "FMNL1--EIF1^FMNL1^ENSG00000184922.14" ; exon_id "ENSE00001337921.3" ; exon_number 1 ; gene_id "FMNL1--EIF1^FMNL1^ENSG00000184922.14" ; gene_name FMNL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180196.5" ; hgnc_id "HGNC:1212" ; level 3 ; orig_coord_info "chr17,45222125,45222187,+" ; protein_id "ENSP00000327442.4" ; tag basic ; transcript_id "FMNL1--EIF1^ENST00000328118.7" ; transcript_name "FMNL1-201" ; transcript_support_level 2 ; transcript_type protein_coding
FMNL1--EIF1 ENSEMBL mRNA 1634 18470 . + . FI_gene_label "FMNL1^ENSG00000184922.14" ; ID "FMNL1--EIF1^ENST00000328118.7" ; Parent "FMNL1--EIF1^FMNL1^ENSG00000184922.14" ; exon_id "ENSE00001337921.3" ; exon_number 1 ; gene_id "FMNL1--EIF1^FMNL1^ENSG00000184922.14" ; gene_name FMNL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180196.5" ; hgnc_id "HGNC:1212" ; level 3 ; orig_coord_info "chr17,45222125,45222187,+" ; protein_id "ENSP00000327442.4" ; tag basic ; transcript_id "FMNL1--EIF1^ENST00000328118.7" ; transcript_name "FMNL1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
FMNL1--EIF1 HAVANA gene 21831 25614 . + . FI_gene_label "EIF1^ENSG00000173812.11" ; ID "FMNL1--EIF1^EIF1^ENSG00000173812.11" ; ccdsid "CCDS11403.1" ; exon_id "ENSE00001882669.2" ; exon_number 1 ; gene_id "FMNL1--EIF1^EIF1^ENSG00000173812.11" ; gene_name EIF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133492.6" ; havana_transcript "OTTHUMT00000257390.2" ; hgnc_id "HGNC:3249" ; level 2 ; orig_coord_info "chr17,41689039,41689069,+" ; protein_id "ENSP00000419449.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FMNL1--EIF1^ENST00000469257.2" ; transcript_name "EIF1-203" ; transcript_support_level 1 ; transcript_type protein_coding
FMNL1--EIF1 HAVANA mRNA 21831 25614 . + . FI_gene_label "EIF1^ENSG00000173812.11" ; ID "FMNL1--EIF1^ENST00000469257.2" ; Parent "FMNL1--EIF1^EIF1^ENSG00000173812.11" ; ccdsid "CCDS11403.1" ; exon_id "ENSE00001882669.2" ; exon_number 1 ; gene_id "FMNL1--EIF1^EIF1^ENSG00000173812.11" ; gene_name EIF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133492.6" ; havana_transcript "OTTHUMT00000257390.2" ; hgnc_id "HGNC:3249" ; level 2 ; orig_coord_info "chr17,41689039,41689069,+" ; protein_id "ENSP00000419449.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FMNL1--EIF1^ENST00000469257.2" ; transcript_name "EIF1-203" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GRB7--KRT16 HAVANA gene 13745 16734 . + . FI_gene_label "KRT16^ENSG00000186832.9" ; ID "GRB7--KRT16^KRT16^ENSG00000186832.9" ; ccdsid "CCDS11401.1" ; exon_id "ENSE00001723397.3" ; exon_number 1 ; gene_id "GRB7--KRT16^KRT16^ENSG00000186832.9" ; gene_name KRT16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133495.5" ; havana_transcript "OTTHUMT00000257408.2" ; hgnc_id "HGNC:6423" ; level 2 ; orig_coord_info "chr17,41612158,41612688,-" ; protein_id "ENSP00000301653.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GRB7--KRT16^ENST00000301653.9" ; transcript_name "KRT16-201" ; transcript_support_level 1 ; transcript_type protein_coding
GRB7--KRT16 HAVANA mRNA 13745 16734 . + . FI_gene_label "KRT16^ENSG00000186832.9" ; ID "GRB7--KRT16^ENST00000301653.9" ; Parent "GRB7--KRT16^KRT16^ENSG00000186832.9" ; ccdsid "CCDS11401.1" ; exon_id "ENSE00001723397.3" ; exon_number 1 ; gene_id "GRB7--KRT16^KRT16^ENSG00000186832.9" ; gene_name KRT16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133495.5" ; havana_transcript "OTTHUMT00000257408.2" ; hgnc_id "HGNC:6423" ; level 2 ; orig_coord_info "chr17,41612158,41612688,-" ; protein_id "ENSP00000301653.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GRB7--KRT16^ENST00000301653.9" ; transcript_name "KRT16-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GRB7--KRT16 HAVANA gene 1012 9289 . + . FI_gene_label "GRB7^ENSG00000141738.14" ; ID "GRB7--KRT16^GRB7^ENSG00000141738.14" ; ccdsid "CCDS11345.1" ; exon_id "ENSE00003687545.1" ; exon_number 2 ; gene_id "GRB7--KRT16^GRB7^ENSG00000141738.14" ; gene_name GRB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133253.6" ; havana_transcript "OTTHUMT00000257024.3" ; hgnc_id "HGNC:4567" ; level 2 ; orig_coord_info "chr17,39742302,39742456,+" ; protein_id "ENSP00000310771.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GRB7--KRT16^ENST00000309156.9" ; transcript_name "GRB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
GRB7--KRT16 HAVANA mRNA 1012 9289 . + . FI_gene_label "GRB7^ENSG00000141738.14" ; ID "GRB7--KRT16^ENST00000309156.9" ; Parent "GRB7--KRT16^GRB7^ENSG00000141738.14" ; ccdsid "CCDS11345.1" ; exon_id "ENSE00003687545.1" ; exon_number 2 ; gene_id "GRB7--KRT16^GRB7^ENSG00000141738.14" ; gene_name GRB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133253.6" ; havana_transcript "OTTHUMT00000257024.3" ; hgnc_id "HGNC:4567" ; level 2 ; orig_coord_info "chr17,39742302,39742456,+" ; protein_id "ENSP00000310771.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GRB7--KRT16^ENST00000309156.9" ; transcript_name "GRB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GRIN2A--AC012178.1 HAVANA gene 1501 37392 . + . FI_gene_label "GRIN2A^ENSG00000183454.18" ; ID "GRIN2A--AC012178.1^GRIN2A^ENSG00000183454.18" ; ccdsid "CCDS10539.1" ; exon_id "ENSE00001525515.1" ; exon_number 2 ; gene_id "GRIN2A--AC012178.1^GRIN2A^ENSG00000183454.18" ; gene_name GRIN2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000129721.10" ; havana_transcript "OTTHUMT00000268266.2" ; hgnc_id "HGNC:4585" ; level 2 ; orig_coord_info "chr16,10179998,10180411,-" ; protein_id "ENSP00000332549.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "GRIN2A--AC012178.1^ENST00000330684.4" ; transcript_name "GRIN2A-201" ; transcript_support_level 1 ; transcript_type protein_coding
GRIN2A--AC012178.1 HAVANA mRNA 1501 37392 . + . FI_gene_label "GRIN2A^ENSG00000183454.18" ; ID "GRIN2A--AC012178.1^ENST00000330684.4" ; Parent "GRIN2A--AC012178.1^GRIN2A^ENSG00000183454.18" ; ccdsid "CCDS10539.1" ; exon_id "ENSE00001525515.1" ; exon_number 2 ; gene_id "GRIN2A--AC012178.1^GRIN2A^ENSG00000183454.18" ; gene_name GRIN2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000129721.10" ; havana_transcript "OTTHUMT00000268266.2" ; hgnc_id "HGNC:4585" ; level 2 ; orig_coord_info "chr16,10179998,10180411,-" ; protein_id "ENSP00000332549.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "GRIN2A--AC012178.1^ENST00000330684.4" ; transcript_name "GRIN2A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GRIN2A--JUP HAVANA gene 40630 55563 . + . FI_gene_label "JUP^ENSG00000173801.17" ; ID "GRIN2A--JUP^JUP^ENSG00000173801.17" ; ccdsid "CCDS11407.1" ; exon_id "ENSE00002523385.1" ; exon_number 2 ; gene_id "GRIN2A--JUP^JUP^ENSG00000173801.17" ; gene_name JUP ; gene_type protein_coding ; havana_gene "OTTHUMG00000133494.10" ; havana_transcript "OTTHUMT00000257399.1" ; hgnc_id "HGNC:6207" ; level 2 ; orig_coord_info "chr17,41771647,41771854,-" ; protein_id "ENSP00000311113.5" ; tag basic appris_principal_1 CCDS ; transcript_id "GRIN2A--JUP^ENST00000310706.9" ; transcript_name "JUP-201" ; transcript_support_level 1 ; transcript_type protein_coding
GRIN2A--JUP HAVANA mRNA 40630 55563 . + . FI_gene_label "JUP^ENSG00000173801.17" ; ID "GRIN2A--JUP^ENST00000310706.9" ; Parent "GRIN2A--JUP^JUP^ENSG00000173801.17" ; ccdsid "CCDS11407.1" ; exon_id "ENSE00002523385.1" ; exon_number 2 ; gene_id "GRIN2A--JUP^JUP^ENSG00000173801.17" ; gene_name JUP ; gene_type protein_coding ; havana_gene "OTTHUMG00000133494.10" ; havana_transcript "OTTHUMT00000257399.1" ; hgnc_id "HGNC:6207" ; level 2 ; orig_coord_info "chr17,41771647,41771854,-" ; protein_id "ENSP00000311113.5" ; tag basic appris_principal_1 CCDS ; transcript_id "GRIN2A--JUP^ENST00000310706.9" ; transcript_name "JUP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GRIN2A--JUP HAVANA gene 1501 37392 . + . FI_gene_label "GRIN2A^ENSG00000183454.18" ; ID "GRIN2A--JUP^GRIN2A^ENSG00000183454.18" ; ccdsid "CCDS10539.1" ; exon_id "ENSE00001525515.1" ; exon_number 2 ; gene_id "GRIN2A--JUP^GRIN2A^ENSG00000183454.18" ; gene_name GRIN2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000129721.10" ; havana_transcript "OTTHUMT00000268266.2" ; hgnc_id "HGNC:4585" ; level 2 ; orig_coord_info "chr16,10179998,10180411,-" ; protein_id "ENSP00000332549.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "GRIN2A--JUP^ENST00000330684.4" ; transcript_name "GRIN2A-201" ; transcript_support_level 1 ; transcript_type protein_coding
GRIN2A--JUP HAVANA mRNA 1501 37392 . + . FI_gene_label "GRIN2A^ENSG00000183454.18" ; ID "GRIN2A--JUP^ENST00000330684.4" ; Parent "GRIN2A--JUP^GRIN2A^ENSG00000183454.18" ; ccdsid "CCDS10539.1" ; exon_id "ENSE00001525515.1" ; exon_number 2 ; gene_id "GRIN2A--JUP^GRIN2A^ENSG00000183454.18" ; gene_name GRIN2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000129721.10" ; havana_transcript "OTTHUMT00000268266.2" ; hgnc_id "HGNC:4585" ; level 2 ; orig_coord_info "chr16,10179998,10180411,-" ; protein_id "ENSP00000332549.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "GRIN2A--JUP^ENST00000330684.4" ; transcript_name "GRIN2A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HNF1B--SPOP ENSEMBL gene 17822 37425 . + . FI_gene_label "SPOP^ENSG00000121067.19" ; ID "HNF1B--SPOP^SPOP^ENSG00000121067.19" ; ccdsid "CCDS11551.1" ; exon_id "ENSE00003641865.1" ; exon_number 3 ; gene_id "HNF1B--SPOP^SPOP^ENSG00000121067.19" ; gene_name SPOP ; gene_type protein_coding ; havana_gene "OTTHUMG00000161496.19" ; hgnc_id "HGNC:11254" ; level 3 ; orig_coord_info "chr17,49622733,49622810,-" ; protein_id "ENSP00000240327.2" ; tag basic appris_principal_1 CCDS ; transcript_id "HNF1B--SPOP^ENST00000347630.6" ; transcript_name "SPOP-201" ; transcript_support_level 5 ; transcript_type protein_coding
HNF1B--SPOP ENSEMBL mRNA 17822 37425 . + . FI_gene_label "SPOP^ENSG00000121067.19" ; ID "HNF1B--SPOP^ENST00000347630.6" ; Parent "HNF1B--SPOP^SPOP^ENSG00000121067.19" ; ccdsid "CCDS11551.1" ; exon_id "ENSE00003641865.1" ; exon_number 3 ; gene_id "HNF1B--SPOP^SPOP^ENSG00000121067.19" ; gene_name SPOP ; gene_type protein_coding ; havana_gene "OTTHUMG00000161496.19" ; hgnc_id "HGNC:11254" ; level 3 ; orig_coord_info "chr17,49622733,49622810,-" ; protein_id "ENSP00000240327.2" ; tag basic appris_principal_1 CCDS ; transcript_id "HNF1B--SPOP^ENST00000347630.6" ; transcript_name "SPOP-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
HNF1B--SPOP HAVANA gene 1088 14010 . + . FI_gene_label "HNF1B^ENSG00000275410.5" ; ID "HNF1B--SPOP^HNF1B^ENSG00000275410.5" ; ccdsid "CCDS77007.1" ; exon_id "ENSE00003737717.1" ; exon_number 1 ; gene_id "HNF1B--SPOP^HNF1B^ENSG00000275410.5" ; gene_name HNF1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000188478.2" ; havana_transcript "OTTHUMT00000477396.1" ; hgnc_id "HGNC:11630" ; level 2 ; orig_coord_info "chr17,37744541,37744884,-" ; protein_id "ENSP00000477524.1" ; tag basic CCDS ; transcript_id "HNF1B--SPOP^ENST00000613727.4" ; transcript_name "HNF1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
HNF1B--SPOP HAVANA mRNA 1088 14010 . + . FI_gene_label "HNF1B^ENSG00000275410.5" ; ID "HNF1B--SPOP^ENST00000613727.4" ; Parent "HNF1B--SPOP^HNF1B^ENSG00000275410.5" ; ccdsid "CCDS77007.1" ; exon_id "ENSE00003737717.1" ; exon_number 1 ; gene_id "HNF1B--SPOP^HNF1B^ENSG00000275410.5" ; gene_name HNF1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000188478.2" ; havana_transcript "OTTHUMT00000477396.1" ; hgnc_id "HGNC:11630" ; level 2 ; orig_coord_info "chr17,37744541,37744884,-" ; protein_id "ENSP00000477524.1" ; tag basic CCDS ; transcript_id "HNF1B--SPOP^ENST00000613727.4" ; transcript_name "HNF1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
JUP--TVP23A HAVANA gene 19168 30992 . + . FI_gene_label "TVP23A^ENSG00000166676.17" ; ID "JUP--TVP23A^TVP23A^ENSG00000166676.17" ; ccdsid "CCDS45408.1" ; exon_id "ENSE00001490040.4" ; exon_number 1 ; gene_id "JUP--TVP23A^TVP23A^ENSG00000166676.17" ; gene_name TVP23A ; gene_type protein_coding ; havana_gene "OTTHUMG00000177389.6" ; havana_transcript "OTTHUMT00000436680.2" ; hgnc_id "HGNC:20398" ; level 2 ; orig_coord_info "chr16,10818485,10818493,-" ; protein_id "ENSP00000299866.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "JUP--TVP23A^ENST00000299866.13" ; transcript_name "TVP23A-201" ; transcript_support_level 2 ; transcript_type protein_coding
JUP--TVP23A HAVANA mRNA 19168 30992 . + . FI_gene_label "TVP23A^ENSG00000166676.17" ; ID "JUP--TVP23A^ENST00000299866.13" ; Parent "JUP--TVP23A^TVP23A^ENSG00000166676.17" ; ccdsid "CCDS45408.1" ; exon_id "ENSE00001490040.4" ; exon_number 1 ; gene_id "JUP--TVP23A^TVP23A^ENSG00000166676.17" ; gene_name TVP23A ; gene_type protein_coding ; havana_gene "OTTHUMG00000177389.6" ; havana_transcript "OTTHUMT00000436680.2" ; hgnc_id "HGNC:20398" ; level 2 ; orig_coord_info "chr16,10818485,10818493,-" ; protein_id "ENSP00000299866.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "JUP--TVP23A^ENST00000299866.13" ; transcript_name "TVP23A-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
JUP--TVP23A HAVANA gene 1234 16167 . + . FI_gene_label "JUP^ENSG00000173801.17" ; ID "JUP--TVP23A^JUP^ENSG00000173801.17" ; ccdsid "CCDS11407.1" ; exon_id "ENSE00002523385.1" ; exon_number 2 ; gene_id "JUP--TVP23A^JUP^ENSG00000173801.17" ; gene_name JUP ; gene_type protein_coding ; havana_gene "OTTHUMG00000133494.10" ; havana_transcript "OTTHUMT00000257399.1" ; hgnc_id "HGNC:6207" ; level 2 ; orig_coord_info "chr17,41771647,41771854,-" ; protein_id "ENSP00000311113.5" ; tag basic appris_principal_1 CCDS ; transcript_id "JUP--TVP23A^ENST00000310706.9" ; transcript_name "JUP-201" ; transcript_support_level 1 ; transcript_type protein_coding
JUP--TVP23A HAVANA mRNA 1234 16167 . + . FI_gene_label "JUP^ENSG00000173801.17" ; ID "JUP--TVP23A^ENST00000310706.9" ; Parent "JUP--TVP23A^JUP^ENSG00000173801.17" ; ccdsid "CCDS11407.1" ; exon_id "ENSE00002523385.1" ; exon_number 2 ; gene_id "JUP--TVP23A^JUP^ENSG00000173801.17" ; gene_name JUP ; gene_type protein_coding ; havana_gene "OTTHUMG00000133494.10" ; havana_transcript "OTTHUMT00000257399.1" ; hgnc_id "HGNC:6207" ; level 2 ; orig_coord_info "chr17,41771647,41771854,-" ; protein_id "ENSP00000311113.5" ; tag basic appris_principal_1 CCDS ; transcript_id "JUP--TVP23A^ENST00000310706.9" ; transcript_name "JUP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KIAA0100--HNF1B HAVANA gene 1001 24560 . + . FI_gene_label "KIAA0100^ENSG00000007202.15" ; ID "KIAA0100--HNF1B^KIAA0100^ENSG00000007202.15" ; exon_id "ENSE00003520766.1" ; exon_number 5 ; gene_id "KIAA0100--HNF1B^KIAA0100^ENSG00000007202.15" ; gene_name KIAA0100 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166587.7" ; havana_transcript "OTTHUMT00000445826.3" ; hgnc_id "HGNC:28960" ; level 1 ; orig_coord_info "chr17,28642869,28642954,-" ; protein_id "ENSP00000467716.1" ; tag basic exp_conf ; transcript_id "KIAA0100--HNF1B^ENST00000389003.7" ; transcript_name "KIAA0100-201" ; transcript_support_level 5 ; transcript_type protein_coding
KIAA0100--HNF1B HAVANA mRNA 1001 24560 . + . FI_gene_label "KIAA0100^ENSG00000007202.15" ; ID "KIAA0100--HNF1B^ENST00000389003.7" ; Parent "KIAA0100--HNF1B^KIAA0100^ENSG00000007202.15" ; exon_id "ENSE00003520766.1" ; exon_number 5 ; gene_id "KIAA0100--HNF1B^KIAA0100^ENSG00000007202.15" ; gene_name KIAA0100 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166587.7" ; havana_transcript "OTTHUMT00000445826.3" ; hgnc_id "HGNC:28960" ; level 1 ; orig_coord_info "chr17,28642869,28642954,-" ; protein_id "ENSP00000467716.1" ; tag basic exp_conf ; transcript_id "KIAA0100--HNF1B^ENST00000389003.7" ; transcript_name "KIAA0100-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
KIAA0100--HNF1B HAVANA gene 28084 41006 . + . FI_gene_label "HNF1B^ENSG00000275410.5" ; ID "KIAA0100--HNF1B^HNF1B^ENSG00000275410.5" ; ccdsid "CCDS77007.1" ; exon_id "ENSE00003737717.1" ; exon_number 1 ; gene_id "KIAA0100--HNF1B^HNF1B^ENSG00000275410.5" ; gene_name HNF1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000188478.2" ; havana_transcript "OTTHUMT00000477396.1" ; hgnc_id "HGNC:11630" ; level 2 ; orig_coord_info "chr17,37744541,37744884,-" ; protein_id "ENSP00000477524.1" ; tag basic CCDS ; transcript_id "KIAA0100--HNF1B^ENST00000613727.4" ; transcript_name "HNF1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
KIAA0100--HNF1B HAVANA mRNA 28084 41006 . + . FI_gene_label "HNF1B^ENSG00000275410.5" ; ID "KIAA0100--HNF1B^ENST00000613727.4" ; Parent "KIAA0100--HNF1B^HNF1B^ENSG00000275410.5" ; ccdsid "CCDS77007.1" ; exon_id "ENSE00003737717.1" ; exon_number 1 ; gene_id "KIAA0100--HNF1B^HNF1B^ENSG00000275410.5" ; gene_name HNF1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000188478.2" ; havana_transcript "OTTHUMT00000477396.1" ; hgnc_id "HGNC:11630" ; level 2 ; orig_coord_info "chr17,37744541,37744884,-" ; protein_id "ENSP00000477524.1" ; tag basic CCDS ; transcript_id "KIAA0100--HNF1B^ENST00000613727.4" ; transcript_name "HNF1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KIRREL1--AL139010.1 HAVANA gene 1373 18256 . + . FI_gene_label "KIRREL1^ENSG00000183853.18" ; ID "KIRREL1--AL139010.1^KIRREL1^ENSG00000183853.18" ; ccdsid "CCDS1172.2" ; exon_id "ENSE00001821139.2" ; exon_number 1 ; gene_id "KIRREL1--AL139010.1^KIRREL1^ENSG00000183853.18" ; gene_name KIRREL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022438.6" ; havana_transcript "OTTHUMT00000058342.4" ; hgnc_id "HGNC:15734" ; level 2 ; orig_coord_info "chr1,157993677,157993728,+" ; protein_id "ENSP00000352138.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KIRREL1--AL139010.1^ENST00000359209.11" ; transcript_name "KIRREL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KIRREL1--AL139010.1 HAVANA mRNA 1373 18256 . + . FI_gene_label "KIRREL1^ENSG00000183853.18" ; ID "KIRREL1--AL139010.1^ENST00000359209.11" ; Parent "KIRREL1--AL139010.1^KIRREL1^ENSG00000183853.18" ; ccdsid "CCDS1172.2" ; exon_id "ENSE00001821139.2" ; exon_number 1 ; gene_id "KIRREL1--AL139010.1^KIRREL1^ENSG00000183853.18" ; gene_name KIRREL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022438.6" ; havana_transcript "OTTHUMT00000058342.4" ; hgnc_id "HGNC:15734" ; level 2 ; orig_coord_info "chr1,157993677,157993728,+" ; protein_id "ENSP00000352138.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KIRREL1--AL139010.1^ENST00000359209.11" ; transcript_name "KIRREL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KIRREL1--CFAP300 HAVANA gene 1373 18256 . + . FI_gene_label "KIRREL1^ENSG00000183853.18" ; ID "KIRREL1--CFAP300^KIRREL1^ENSG00000183853.18" ; ccdsid "CCDS1172.2" ; exon_id "ENSE00001821139.2" ; exon_number 1 ; gene_id "KIRREL1--CFAP300^KIRREL1^ENSG00000183853.18" ; gene_name KIRREL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022438.6" ; havana_transcript "OTTHUMT00000058342.4" ; hgnc_id "HGNC:15734" ; level 2 ; orig_coord_info "chr1,157993677,157993728,+" ; protein_id "ENSP00000352138.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KIRREL1--CFAP300^ENST00000359209.11" ; transcript_name "KIRREL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KIRREL1--CFAP300 HAVANA mRNA 1373 18256 . + . FI_gene_label "KIRREL1^ENSG00000183853.18" ; ID "KIRREL1--CFAP300^ENST00000359209.11" ; Parent "KIRREL1--CFAP300^KIRREL1^ENSG00000183853.18" ; ccdsid "CCDS1172.2" ; exon_id "ENSE00001821139.2" ; exon_number 1 ; gene_id "KIRREL1--CFAP300^KIRREL1^ENSG00000183853.18" ; gene_name KIRREL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022438.6" ; havana_transcript "OTTHUMT00000058342.4" ; hgnc_id "HGNC:15734" ; level 2 ; orig_coord_info "chr1,157993677,157993728,+" ; protein_id "ENSP00000352138.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KIRREL1--CFAP300^ENST00000359209.11" ; transcript_name "KIRREL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KIRREL1--CFAP300 HAVANA gene 21257 28903 . + . FI_gene_label "CFAP300^ENSG00000137691.13" ; ID "KIRREL1--CFAP300^CFAP300^ENSG00000137691.13" ; ccdsid "CCDS8313.2" ; exon_id "ENSE00002189005.2" ; exon_number 1 ; gene_id "KIRREL1--CFAP300^CFAP300^ENSG00000137691.13" ; gene_name CFAP300 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167320.2" ; havana_transcript "OTTHUMT00000394144.2" ; hgnc_id "HGNC:28188" ; level 2 ; orig_coord_info "chr11,102047471,102047580,+" ; protein_id "ENSP00000414390.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KIRREL1--CFAP300^ENST00000434758.7" ; transcript_name "CFAP300-201" ; transcript_support_level 2 ; transcript_type protein_coding
KIRREL1--CFAP300 HAVANA mRNA 21257 28903 . + . FI_gene_label "CFAP300^ENSG00000137691.13" ; ID "KIRREL1--CFAP300^ENST00000434758.7" ; Parent "KIRREL1--CFAP300^CFAP300^ENSG00000137691.13" ; ccdsid "CCDS8313.2" ; exon_id "ENSE00002189005.2" ; exon_number 1 ; gene_id "KIRREL1--CFAP300^CFAP300^ENSG00000137691.13" ; gene_name CFAP300 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167320.2" ; havana_transcript "OTTHUMT00000394144.2" ; hgnc_id "HGNC:28188" ; level 2 ; orig_coord_info "chr11,102047471,102047580,+" ; protein_id "ENSP00000414390.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KIRREL1--CFAP300^ENST00000434758.7" ; transcript_name "CFAP300-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
KRT19--TEKT5 HAVANA gene 7538 15915 . + . FI_gene_label "TEKT5^ENSG00000153060.8" ; ID "KRT19--TEKT5^TEKT5^ENSG00000153060.8" ; ccdsid "CCDS10542.1" ; exon_id "ENSE00001291351.3" ; exon_number 1 ; gene_id "KRT19--TEKT5^TEKT5^ENSG00000153060.8" ; gene_name TEKT5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129750.3" ; havana_transcript "OTTHUMT00000251963.2" ; hgnc_id "HGNC:26554" ; level 2 ; orig_coord_info "chr16,10694310,10694873,-" ; protein_id "ENSP00000283025.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KRT19--TEKT5^ENST00000283025.7" ; transcript_name "TEKT5-201" ; transcript_support_level 1 ; transcript_type protein_coding
KRT19--TEKT5 HAVANA mRNA 7538 15915 . + . FI_gene_label "TEKT5^ENSG00000153060.8" ; ID "KRT19--TEKT5^ENST00000283025.7" ; Parent "KRT19--TEKT5^TEKT5^ENSG00000153060.8" ; ccdsid "CCDS10542.1" ; exon_id "ENSE00001291351.3" ; exon_number 1 ; gene_id "KRT19--TEKT5^TEKT5^ENSG00000153060.8" ; gene_name TEKT5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129750.3" ; havana_transcript "OTTHUMT00000251963.2" ; hgnc_id "HGNC:26554" ; level 2 ; orig_coord_info "chr16,10694310,10694873,-" ; protein_id "ENSP00000283025.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KRT19--TEKT5^ENST00000283025.7" ; transcript_name "TEKT5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KRT19--TEKT5 HAVANA gene 1001 4537 . + . FI_gene_label "KRT19^ENSG00000171345.13" ; ID "KRT19--TEKT5^KRT19^ENSG00000171345.13" ; ccdsid "CCDS11399.1" ; exon_id "ENSE00000863524.4" ; exon_number 1 ; gene_id "KRT19--TEKT5^KRT19^ENSG00000171345.13" ; gene_name KRT19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133422.5" ; havana_transcript "OTTHUMT00000257285.1" ; hgnc_id "HGNC:6436" ; level 2 ; orig_coord_info "chr17,41527828,41528247,-" ; protein_id "ENSP00000355124.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KRT19--TEKT5^ENST00000361566.7" ; transcript_name "KRT19-201" ; transcript_support_level 1 ; transcript_type protein_coding
KRT19--TEKT5 HAVANA mRNA 1001 4537 . + . FI_gene_label "KRT19^ENSG00000171345.13" ; ID "KRT19--TEKT5^ENST00000361566.7" ; Parent "KRT19--TEKT5^KRT19^ENSG00000171345.13" ; ccdsid "CCDS11399.1" ; exon_id "ENSE00000863524.4" ; exon_number 1 ; gene_id "KRT19--TEKT5^KRT19^ENSG00000171345.13" ; gene_name KRT19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133422.5" ; havana_transcript "OTTHUMT00000257285.1" ; hgnc_id "HGNC:6436" ; level 2 ; orig_coord_info "chr17,41527828,41528247,-" ; protein_id "ENSP00000355124.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KRT19--TEKT5^ENST00000361566.7" ; transcript_name "KRT19-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LASP1--KRT16 HAVANA gene 20078 23067 . + . FI_gene_label "KRT16^ENSG00000186832.9" ; ID "LASP1--KRT16^KRT16^ENSG00000186832.9" ; ccdsid "CCDS11401.1" ; exon_id "ENSE00001723397.3" ; exon_number 1 ; gene_id "LASP1--KRT16^KRT16^ENSG00000186832.9" ; gene_name KRT16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133495.5" ; havana_transcript "OTTHUMT00000257408.2" ; hgnc_id "HGNC:6423" ; level 2 ; orig_coord_info "chr17,41612158,41612688,-" ; protein_id "ENSP00000301653.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LASP1--KRT16^ENST00000301653.9" ; transcript_name "KRT16-201" ; transcript_support_level 1 ; transcript_type protein_coding
LASP1--KRT16 HAVANA mRNA 20078 23067 . + . FI_gene_label "KRT16^ENSG00000186832.9" ; ID "LASP1--KRT16^ENST00000301653.9" ; Parent "LASP1--KRT16^KRT16^ENSG00000186832.9" ; ccdsid "CCDS11401.1" ; exon_id "ENSE00001723397.3" ; exon_number 1 ; gene_id "LASP1--KRT16^KRT16^ENSG00000186832.9" ; gene_name KRT16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133495.5" ; havana_transcript "OTTHUMT00000257408.2" ; hgnc_id "HGNC:6423" ; level 2 ; orig_coord_info "chr17,41612158,41612688,-" ; protein_id "ENSP00000301653.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LASP1--KRT16^ENST00000301653.9" ; transcript_name "KRT16-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LASP1--KRT16 HAVANA gene 1200 15628 . + . FI_gene_label "LASP1^ENSG00000002834.18" ; ID "LASP1--KRT16^LASP1^ENSG00000002834.18" ; ccdsid "CCDS11331.1" ; exon_id "ENSE00002711323.2" ; exon_number 1 ; gene_id "LASP1--KRT16^LASP1^ENSG00000002834.18" ; gene_name LASP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133182.8" ; havana_transcript "OTTHUMT00000256890.4" ; hgnc_id "HGNC:6513" ; level 2 ; orig_coord_info "chr17,38870190,38870258,+" ; protein_id "ENSP00000325240.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LASP1--KRT16^ENST00000318008.11" ; transcript_name "LASP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
LASP1--KRT16 HAVANA mRNA 1200 15628 . + . FI_gene_label "LASP1^ENSG00000002834.18" ; ID "LASP1--KRT16^ENST00000318008.11" ; Parent "LASP1--KRT16^LASP1^ENSG00000002834.18" ; ccdsid "CCDS11331.1" ; exon_id "ENSE00002711323.2" ; exon_number 1 ; gene_id "LASP1--KRT16^LASP1^ENSG00000002834.18" ; gene_name LASP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133182.8" ; havana_transcript "OTTHUMT00000256890.4" ; hgnc_id "HGNC:6513" ; level 2 ; orig_coord_info "chr17,38870190,38870258,+" ; protein_id "ENSP00000325240.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LASP1--KRT16^ENST00000318008.11" ; transcript_name "LASP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NEB--SLC7A14-AS1 HAVANA gene 141584 157883 . + . FI_gene_label "NEB^ENSG00000183091.20" ; ID "NEB--SLC7A14-AS1^NEB^ENSG00000183091.20" ; exon_id "ENSE00001664282.1" ; exon_number 1 ; gene_id "NEB--SLC7A14-AS1^NEB^ENSG00000183091.20" ; gene_name NEB ; gene_type protein_coding ; havana_gene "OTTHUMG00000153784.16" ; havana_transcript "OTTHUMT00000333622.2" ; hgnc_id "HGNC:7720" ; level 2 ; orig_coord_info "chr2,151508005,151508042,-" ; protein_id "ENSP00000380498.2" ; tag mRNA_start_NF cds_start_NF ; transcript_id "NEB--SLC7A14-AS1^ENST00000397337.6" ; transcript_name "NEB-201" ; transcript_support_level 5 ; transcript_type protein_coding
NEB--SLC7A14-AS1 HAVANA mRNA 141584 157883 . + . FI_gene_label "NEB^ENSG00000183091.20" ; ID "NEB--SLC7A14-AS1^ENST00000397337.6" ; Parent "NEB--SLC7A14-AS1^NEB^ENSG00000183091.20" ; exon_id "ENSE00001664282.1" ; exon_number 1 ; gene_id "NEB--SLC7A14-AS1^NEB^ENSG00000183091.20" ; gene_name NEB ; gene_type protein_coding ; havana_gene "OTTHUMG00000153784.16" ; havana_transcript "OTTHUMT00000333622.2" ; hgnc_id "HGNC:7720" ; level 2 ; orig_coord_info "chr2,151508005,151508042,-" ; protein_id "ENSP00000380498.2" ; tag mRNA_start_NF cds_start_NF ; transcript_id "NEB--SLC7A14-AS1^ENST00000397337.6" ; transcript_name "NEB-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PACS1--LINC02054 HAVANA gene 1001 28846 . + . FI_gene_label "PACS1^ENSG00000175115.13" ; ID "PACS1--LINC02054^PACS1^ENSG00000175115.13" ; ccdsid "CCDS8129.1" ; exon_id "ENSE00002161316.2" ; exon_number 1 ; gene_id "PACS1--LINC02054^PACS1^ENSG00000175115.13" ; gene_name PACS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166889.5" ; havana_transcript "OTTHUMT00000391690.3" ; hgnc_id "HGNC:30032" ; level 2 ; orig_coord_info "chr11,66070487,66070842,+" ; protein_id "ENSP00000316454.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "PACS1--LINC02054^ENST00000320580.9" ; transcript_name "PACS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PACS1--LINC02054 HAVANA mRNA 1001 28846 . + . FI_gene_label "PACS1^ENSG00000175115.13" ; ID "PACS1--LINC02054^ENST00000320580.9" ; Parent "PACS1--LINC02054^PACS1^ENSG00000175115.13" ; ccdsid "CCDS8129.1" ; exon_id "ENSE00002161316.2" ; exon_number 1 ; gene_id "PACS1--LINC02054^PACS1^ENSG00000175115.13" ; gene_name PACS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166889.5" ; havana_transcript "OTTHUMT00000391690.3" ; hgnc_id "HGNC:30032" ; level 2 ; orig_coord_info "chr11,66070487,66070842,+" ; protein_id "ENSP00000316454.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "PACS1--LINC02054^ENST00000320580.9" ; transcript_name "PACS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PGAP3--KRT32 HAVANA gene 13624 19551 . + . FI_gene_label "KRT32^ENSG00000108759.4" ; ID "PGAP3--KRT32^KRT32^ENSG00000108759.4" ; ccdsid "CCDS11393.1" ; exon_id "ENSE00001118396.3" ; exon_number 1 ; gene_id "PGAP3--KRT32^KRT32^ENSG00000108759.4" ; gene_name KRT32 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133430.1" ; havana_transcript "OTTHUMT00000257293.1" ; hgnc_id "HGNC:6449" ; level 2 ; orig_coord_info "chr17,41466858,41467325,-" ; protein_id "ENSP00000225899.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PGAP3--KRT32^ENST00000225899.4" ; transcript_name "KRT32-201" ; transcript_support_level 1 ; transcript_type protein_coding
PGAP3--KRT32 HAVANA mRNA 13624 19551 . + . FI_gene_label "KRT32^ENSG00000108759.4" ; ID "PGAP3--KRT32^ENST00000225899.4" ; Parent "PGAP3--KRT32^KRT32^ENSG00000108759.4" ; ccdsid "CCDS11393.1" ; exon_id "ENSE00001118396.3" ; exon_number 1 ; gene_id "PGAP3--KRT32^KRT32^ENSG00000108759.4" ; gene_name KRT32 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133430.1" ; havana_transcript "OTTHUMT00000257293.1" ; hgnc_id "HGNC:6449" ; level 2 ; orig_coord_info "chr17,41466858,41467325,-" ; protein_id "ENSP00000225899.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PGAP3--KRT32^ENST00000225899.4" ; transcript_name "KRT32-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PGAP3--KRT32 HAVANA gene 2293 10623 . + . FI_gene_label "PGAP3^ENSG00000161395.14" ; ID "PGAP3--KRT32^PGAP3^ENSG00000161395.14" ; ccdsid "CCDS32641.1" ; exon_id "ENSE00003599710.1" ; exon_number 1 ; gene_id "PGAP3--KRT32^PGAP3^ENSG00000161395.14" ; gene_name PGAP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179110.6" ; havana_transcript "OTTHUMT00000444825.2" ; hgnc_id "HGNC:23719" ; level 2 ; orig_coord_info "chr17,39687834,39688014,-" ; protein_id "ENSP00000300658.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PGAP3--KRT32^ENST00000300658.9" ; transcript_name "PGAP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PGAP3--KRT32 HAVANA mRNA 2293 10623 . + . FI_gene_label "PGAP3^ENSG00000161395.14" ; ID "PGAP3--KRT32^ENST00000300658.9" ; Parent "PGAP3--KRT32^PGAP3^ENSG00000161395.14" ; ccdsid "CCDS32641.1" ; exon_id "ENSE00003599710.1" ; exon_number 1 ; gene_id "PGAP3--KRT32^PGAP3^ENSG00000161395.14" ; gene_name PGAP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179110.6" ; havana_transcript "OTTHUMT00000444825.2" ; hgnc_id "HGNC:23719" ; level 2 ; orig_coord_info "chr17,39687834,39688014,-" ; protein_id "ENSP00000300658.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PGAP3--KRT32^ENST00000300658.9" ; transcript_name "PGAP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SRGAP2B--KRT18P42 HAVANA gene 1001 17112 . + . FI_gene_label "SRGAP2B^ENSG00000196369.11" ; ID "SRGAP2B--KRT18P42^SRGAP2B^ENSG00000196369.11" ; exon_id "ENSE00001848190.1" ; exon_number 2 ; gene_id "SRGAP2B--KRT18P42^SRGAP2B^ENSG00000196369.11" ; gene_name SRGAP2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000041442.8" ; havana_transcript "OTTHUMT00000099258.6" ; hgnc_id "HGNC:35237" ; level 2 ; orig_coord_info "chr1,145092835,145092901,-" ; protein_id "ENSP00000477776.1" ; tag basic appris_alternative_2 ; transcript_id "SRGAP2B--KRT18P42^ENST00000612199.4" ; transcript_name "SRGAP2B-204" ; transcript_support_level 1 ; transcript_type protein_coding
SRGAP2B--KRT18P42 HAVANA mRNA 1001 17112 . + . FI_gene_label "SRGAP2B^ENSG00000196369.11" ; ID "SRGAP2B--KRT18P42^ENST00000612199.4" ; Parent "SRGAP2B--KRT18P42^SRGAP2B^ENSG00000196369.11" ; exon_id "ENSE00001848190.1" ; exon_number 2 ; gene_id "SRGAP2B--KRT18P42^SRGAP2B^ENSG00000196369.11" ; gene_name SRGAP2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000041442.8" ; havana_transcript "OTTHUMT00000099258.6" ; hgnc_id "HGNC:35237" ; level 2 ; orig_coord_info "chr1,145092835,145092901,-" ; protein_id "ENSP00000477776.1" ; tag basic appris_alternative_2 ; transcript_id "SRGAP2B--KRT18P42^ENST00000612199.4" ; transcript_name "SRGAP2B-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SRGAP2B--MAN2A1-DT HAVANA gene 1001 17112 . + . FI_gene_label "SRGAP2B^ENSG00000196369.11" ; ID "SRGAP2B--MAN2A1-DT^SRGAP2B^ENSG00000196369.11" ; exon_id "ENSE00001848190.1" ; exon_number 2 ; gene_id "SRGAP2B--MAN2A1-DT^SRGAP2B^ENSG00000196369.11" ; gene_name SRGAP2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000041442.8" ; havana_transcript "OTTHUMT00000099258.6" ; hgnc_id "HGNC:35237" ; level 2 ; orig_coord_info "chr1,145092835,145092901,-" ; protein_id "ENSP00000477776.1" ; tag basic appris_alternative_2 ; transcript_id "SRGAP2B--MAN2A1-DT^ENST00000612199.4" ; transcript_name "SRGAP2B-204" ; transcript_support_level 1 ; transcript_type protein_coding
SRGAP2B--MAN2A1-DT HAVANA mRNA 1001 17112 . + . FI_gene_label "SRGAP2B^ENSG00000196369.11" ; ID "SRGAP2B--MAN2A1-DT^ENST00000612199.4" ; Parent "SRGAP2B--MAN2A1-DT^SRGAP2B^ENSG00000196369.11" ; exon_id "ENSE00001848190.1" ; exon_number 2 ; gene_id "SRGAP2B--MAN2A1-DT^SRGAP2B^ENSG00000196369.11" ; gene_name SRGAP2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000041442.8" ; havana_transcript "OTTHUMT00000099258.6" ; hgnc_id "HGNC:35237" ; level 2 ; orig_coord_info "chr1,145092835,145092901,-" ; protein_id "ENSP00000477776.1" ; tag basic appris_alternative_2 ; transcript_id "SRGAP2B--MAN2A1-DT^ENST00000612199.4" ; transcript_name "SRGAP2B-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SRGAP2B--MAN2A1 HAVANA gene 20113 53109 . + . FI_gene_label "MAN2A1^ENSG00000112893.10" ; ID "SRGAP2B--MAN2A1^MAN2A1^ENSG00000112893.10" ; ccdsid "CCDS34209.1" ; exon_id "ENSE00002058569.2" ; exon_number 1 ; gene_id "SRGAP2B--MAN2A1^MAN2A1^ENSG00000112893.10" ; gene_name MAN2A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162834.3" ; havana_transcript "OTTHUMT00000370680.1" ; hgnc_id "HGNC:6824" ; level 2 ; orig_coord_info "chr5,109690418,109690552,+" ; protein_id "ENSP00000261483.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SRGAP2B--MAN2A1^ENST00000261483.5" ; transcript_name "MAN2A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SRGAP2B--MAN2A1 HAVANA mRNA 20113 53109 . + . FI_gene_label "MAN2A1^ENSG00000112893.10" ; ID "SRGAP2B--MAN2A1^ENST00000261483.5" ; Parent "SRGAP2B--MAN2A1^MAN2A1^ENSG00000112893.10" ; ccdsid "CCDS34209.1" ; exon_id "ENSE00002058569.2" ; exon_number 1 ; gene_id "SRGAP2B--MAN2A1^MAN2A1^ENSG00000112893.10" ; gene_name MAN2A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162834.3" ; havana_transcript "OTTHUMT00000370680.1" ; hgnc_id "HGNC:6824" ; level 2 ; orig_coord_info "chr5,109690418,109690552,+" ; protein_id "ENSP00000261483.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SRGAP2B--MAN2A1^ENST00000261483.5" ; transcript_name "MAN2A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SRGAP2B--MAN2A1 HAVANA gene 1001 17112 . + . FI_gene_label "SRGAP2B^ENSG00000196369.11" ; ID "SRGAP2B--MAN2A1^SRGAP2B^ENSG00000196369.11" ; exon_id "ENSE00001848190.1" ; exon_number 2 ; gene_id "SRGAP2B--MAN2A1^SRGAP2B^ENSG00000196369.11" ; gene_name SRGAP2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000041442.8" ; havana_transcript "OTTHUMT00000099258.6" ; hgnc_id "HGNC:35237" ; level 2 ; orig_coord_info "chr1,145092835,145092901,-" ; protein_id "ENSP00000477776.1" ; tag basic appris_alternative_2 ; transcript_id "SRGAP2B--MAN2A1^ENST00000612199.4" ; transcript_name "SRGAP2B-204" ; transcript_support_level 1 ; transcript_type protein_coding
SRGAP2B--MAN2A1 HAVANA mRNA 1001 17112 . + . FI_gene_label "SRGAP2B^ENSG00000196369.11" ; ID "SRGAP2B--MAN2A1^ENST00000612199.4" ; Parent "SRGAP2B--MAN2A1^SRGAP2B^ENSG00000196369.11" ; exon_id "ENSE00001848190.1" ; exon_number 2 ; gene_id "SRGAP2B--MAN2A1^SRGAP2B^ENSG00000196369.11" ; gene_name SRGAP2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000041442.8" ; havana_transcript "OTTHUMT00000099258.6" ; hgnc_id "HGNC:35237" ; level 2 ; orig_coord_info "chr1,145092835,145092901,-" ; protein_id "ENSP00000477776.1" ; tag basic appris_alternative_2 ; transcript_id "SRGAP2B--MAN2A1^ENST00000612199.4" ; transcript_name "SRGAP2B-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMEM123--SLC7A14-AS1 HAVANA gene 2212 11294 . + . FI_gene_label "TMEM123^ENSG00000152558.15" ; ID "TMEM123--SLC7A14-AS1^TMEM123^ENSG00000152558.15" ; exon_id "ENSE00002186086.1" ; exon_number 1 ; gene_id "TMEM123--SLC7A14-AS1^TMEM123^ENSG00000152558.15" ; gene_name TMEM123 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167326.4" ; havana_transcript "OTTHUMT00000394177.1" ; hgnc_id "HGNC:30138" ; level 2 ; orig_coord_info "chr11,102452524,102452623,-" ; protein_id "ENSP00000355285.3" ; tag basic appris_alternative_2 ; transcript_id "TMEM123--SLC7A14-AS1^ENST00000361236.7" ; transcript_name "TMEM123-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMEM123--SLC7A14-AS1 HAVANA mRNA 2212 11294 . + . FI_gene_label "TMEM123^ENSG00000152558.15" ; ID "TMEM123--SLC7A14-AS1^ENST00000361236.7" ; Parent "TMEM123--SLC7A14-AS1^TMEM123^ENSG00000152558.15" ; exon_id "ENSE00002186086.1" ; exon_number 1 ; gene_id "TMEM123--SLC7A14-AS1^TMEM123^ENSG00000152558.15" ; gene_name TMEM123 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167326.4" ; havana_transcript "OTTHUMT00000394177.1" ; hgnc_id "HGNC:30138" ; level 2 ; orig_coord_info "chr11,102452524,102452623,-" ; protein_id "ENSP00000355285.3" ; tag basic appris_alternative_2 ; transcript_id "TMEM123--SLC7A14-AS1^ENST00000361236.7" ; transcript_name "TMEM123-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TOP2A--EMP2 HAVANA gene 25985 39121 . + . FI_gene_label "EMP2^ENSG00000213853.10" ; ID "TOP2A--EMP2^EMP2^ENSG00000213853.10" ; ccdsid "CCDS10541.1" ; exon_id "ENSE00001143564.1" ; exon_number 2 ; gene_id "TOP2A--EMP2^EMP2^ENSG00000213853.10" ; gene_name EMP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129752.4" ; havana_transcript "OTTHUMT00000251965.2" ; hgnc_id "HGNC:3334" ; level 2 ; orig_coord_info "chr16,10547540,10547617,-" ; protein_id "ENSP00000352540.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TOP2A--EMP2^ENST00000359543.8" ; transcript_name "EMP2-202" ; transcript_support_level 1 ; transcript_type protein_coding
TOP2A--EMP2 HAVANA mRNA 25985 39121 . + . FI_gene_label "EMP2^ENSG00000213853.10" ; ID "TOP2A--EMP2^ENST00000359543.8" ; Parent "TOP2A--EMP2^EMP2^ENSG00000213853.10" ; ccdsid "CCDS10541.1" ; exon_id "ENSE00001143564.1" ; exon_number 2 ; gene_id "TOP2A--EMP2^EMP2^ENSG00000213853.10" ; gene_name EMP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129752.4" ; havana_transcript "OTTHUMT00000251965.2" ; hgnc_id "HGNC:3334" ; level 2 ; orig_coord_info "chr16,10547540,10547617,-" ; protein_id "ENSP00000352540.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TOP2A--EMP2^ENST00000359543.8" ; transcript_name "EMP2-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TOP2A--EMP2 HAVANA gene 1001 22950 . + . FI_gene_label "TOP2A^ENSG00000131747.15" ; ID "TOP2A--EMP2^TOP2A^ENSG00000131747.15" ; ccdsid "CCDS45672.1" ; exon_id "ENSE00001780806.2" ; exon_number 1 ; gene_id "TOP2A--EMP2^TOP2A^ENSG00000131747.15" ; gene_name TOP2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000155008.4" ; havana_transcript "OTTHUMT00000338035.2" ; hgnc_id "HGNC:11989" ; level 2 ; orig_coord_info "chr17,40417771,40417791,-" ; protein_id "ENSP00000411532.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TOP2A--EMP2^ENST00000423485.6" ; transcript_name "TOP2A-201" ; transcript_support_level 1 ; transcript_type protein_coding
TOP2A--EMP2 HAVANA mRNA 1001 22950 . + . FI_gene_label "TOP2A^ENSG00000131747.15" ; ID "TOP2A--EMP2^ENST00000423485.6" ; Parent "TOP2A--EMP2^TOP2A^ENSG00000131747.15" ; ccdsid "CCDS45672.1" ; exon_id "ENSE00001780806.2" ; exon_number 1 ; gene_id "TOP2A--EMP2^TOP2A^ENSG00000131747.15" ; gene_name TOP2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000155008.4" ; havana_transcript "OTTHUMT00000338035.2" ; hgnc_id "HGNC:11989" ; level 2 ; orig_coord_info "chr17,40417771,40417791,-" ; protein_id "ENSP00000411532.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TOP2A--EMP2^ENST00000423485.6" ; transcript_name "TOP2A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRIO--CACNA1C HAVANA gene 75947 143078 . + . FI_gene_label "CACNA1C^ENSG00000151067.22" ; ID "TRIO--CACNA1C^CACNA1C^ENSG00000151067.22" ; ccdsid "CCDS53736.1" ; exon_id "ENSE00003891918.1" ; exon_number 1 ; gene_id "TRIO--CACNA1C^CACNA1C^ENSG00000151067.22" ; gene_name CACNA1C ; gene_type protein_coding ; havana_gene "OTTHUMG00000150243.13" ; havana_transcript "OTTHUMT00000317042.3" ; hgnc_id "HGNC:1390" ; level 2 ; orig_coord_info "chr12,2053563,2053611,+" ; protein_id "ENSP00000329877.7" ; tag CAGE_supported_TSS non_canonical_conserved basic CCDS ; transcript_id "TRIO--CACNA1C^ENST00000327702.12" ; transcript_name "CACNA1C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRIO--CACNA1C HAVANA mRNA 75947 143078 . + . FI_gene_label "CACNA1C^ENSG00000151067.22" ; ID "TRIO--CACNA1C^ENST00000327702.12" ; Parent "TRIO--CACNA1C^CACNA1C^ENSG00000151067.22" ; ccdsid "CCDS53736.1" ; exon_id "ENSE00003891918.1" ; exon_number 1 ; gene_id "TRIO--CACNA1C^CACNA1C^ENSG00000151067.22" ; gene_name CACNA1C ; gene_type protein_coding ; havana_gene "OTTHUMG00000150243.13" ; havana_transcript "OTTHUMT00000317042.3" ; hgnc_id "HGNC:1390" ; level 2 ; orig_coord_info "chr12,2053563,2053611,+" ; protein_id "ENSP00000329877.7" ; tag CAGE_supported_TSS non_canonical_conserved basic CCDS ; transcript_id "TRIO--CACNA1C^ENST00000327702.12" ; transcript_name "CACNA1C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRIO--CACNA1C HAVANA gene 58236 70144 . + . FI_gene_label "TRIO^ENSG00000038382.20" ; ID "TRIO--CACNA1C^TRIO^ENSG00000038382.20" ; exon_id "ENSE00001491808.3" ; exon_number 1 ; gene_id "TRIO--CACNA1C^TRIO^ENSG00000038382.20" ; gene_name TRIO ; gene_type protein_coding ; havana_gene "OTTHUMG00000131057.11" ; havana_transcript "OTTHUMT00000366424.1" ; hgnc_id "HGNC:12303" ; level 2 ; orig_coord_info "chr5,14488941,14489069,+" ; protein_id "ENSP00000339291.5" ; tag basic ; transcript_id "TRIO--CACNA1C^ENST00000344135.5" ; transcript_name "TRIO-201" ; transcript_support_level 2 ; transcript_type protein_coding
TRIO--CACNA1C HAVANA mRNA 58236 70144 . + . FI_gene_label "TRIO^ENSG00000038382.20" ; ID "TRIO--CACNA1C^ENST00000344135.5" ; Parent "TRIO--CACNA1C^TRIO^ENSG00000038382.20" ; exon_id "ENSE00001491808.3" ; exon_number 1 ; gene_id "TRIO--CACNA1C^TRIO^ENSG00000038382.20" ; gene_name TRIO ; gene_type protein_coding ; havana_gene "OTTHUMG00000131057.11" ; havana_transcript "OTTHUMT00000366424.1" ; hgnc_id "HGNC:12303" ; level 2 ; orig_coord_info "chr5,14488941,14489069,+" ; protein_id "ENSP00000339291.5" ; tag basic ; transcript_id "TRIO--CACNA1C^ENST00000344135.5" ; transcript_name "TRIO-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TXNDC11--CIITA HAVANA gene 1001 17381 . + . FI_gene_label "TXNDC11^ENSG00000153066.13" ; ID "TXNDC11--CIITA^TXNDC11^ENSG00000153066.13" ; ccdsid "CCDS32387.1" ; exon_id "ENSE00002633581.2" ; exon_number 1 ; gene_id "TXNDC11--CIITA^TXNDC11^ENSG00000153066.13" ; gene_name TXNDC11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177467.2" ; havana_transcript "OTTHUMT00000437054.1" ; hgnc_id "HGNC:28030" ; level 2 ; orig_coord_info "chr16,11742477,11742730,-" ; protein_id "ENSP00000283033.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "TXNDC11--CIITA^ENST00000283033.10" ; transcript_name "TXNDC11-201" ; transcript_support_level 2 ; transcript_type protein_coding
TXNDC11--CIITA HAVANA mRNA 1001 17381 . + . FI_gene_label "TXNDC11^ENSG00000153066.13" ; ID "TXNDC11--CIITA^ENST00000283033.10" ; Parent "TXNDC11--CIITA^TXNDC11^ENSG00000153066.13" ; ccdsid "CCDS32387.1" ; exon_id "ENSE00002633581.2" ; exon_number 1 ; gene_id "TXNDC11--CIITA^TXNDC11^ENSG00000153066.13" ; gene_name TXNDC11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177467.2" ; havana_transcript "OTTHUMT00000437054.1" ; hgnc_id "HGNC:28030" ; level 2 ; orig_coord_info "chr16,11742477,11742730,-" ; protein_id "ENSP00000283033.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "TXNDC11--CIITA^ENST00000283033.10" ; transcript_name "TXNDC11-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
TXNDC11--CIITA HAVANA gene 21737 53623 . + . FI_gene_label "CIITA^ENSG00000179583.20" ; ID "TXNDC11--CIITA^CIITA^ENSG00000179583.20" ; ccdsid "CCDS10544.1" ; exon_id "ENSE00003915466.1" ; exon_number 1 ; gene_id "TXNDC11--CIITA^CIITA^ENSG00000179583.20" ; gene_name CIITA ; gene_type protein_coding ; havana_gene "OTTHUMG00000129753.7" ; havana_transcript "OTTHUMT00000251966.5" ; hgnc_id "HGNC:7067" ; level 2 ; orig_coord_info "chr16,10877331,10877382,+" ; protein_id "ENSP00000316328.8" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_4 CCDS ; transcript_id "TXNDC11--CIITA^ENST00000324288.14" ; transcript_name "CIITA-201" ; transcript_support_level 1 ; transcript_type protein_coding
TXNDC11--CIITA HAVANA mRNA 21737 53623 . + . FI_gene_label "CIITA^ENSG00000179583.20" ; ID "TXNDC11--CIITA^ENST00000324288.14" ; Parent "TXNDC11--CIITA^CIITA^ENSG00000179583.20" ; ccdsid "CCDS10544.1" ; exon_id "ENSE00003915466.1" ; exon_number 1 ; gene_id "TXNDC11--CIITA^CIITA^ENSG00000179583.20" ; gene_name CIITA ; gene_type protein_coding ; havana_gene "OTTHUMG00000129753.7" ; havana_transcript "OTTHUMT00000251966.5" ; hgnc_id "HGNC:7067" ; level 2 ; orig_coord_info "chr16,10877331,10877382,+" ; protein_id "ENSP00000316328.8" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_4 CCDS ; transcript_id "TXNDC11--CIITA^ENST00000324288.14" ; transcript_name "CIITA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WIPF2--KRT9 HAVANA gene 19890 25903 . + . FI_gene_label "KRT9^ENSG00000171403.10" ; ID "WIPF2--KRT9^KRT9^ENSG00000171403.10" ; ccdsid "CCDS32654.1" ; exon_id "ENSE00001326363.2" ; exon_number 1 ; gene_id "WIPF2--KRT9^KRT9^ENSG00000171403.10" ; gene_name KRT9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133599.4" ; havana_transcript "OTTHUMT00000257707.3" ; hgnc_id "HGNC:6447" ; level 2 ; orig_coord_info "chr17,41571351,41571992,-" ; protein_id "ENSP00000246662.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "WIPF2--KRT9^ENST00000246662.9" ; transcript_name "KRT9-201" ; transcript_support_level 1 ; transcript_type protein_coding
WIPF2--KRT9 HAVANA mRNA 19890 25903 . + . FI_gene_label "KRT9^ENSG00000171403.10" ; ID "WIPF2--KRT9^ENST00000246662.9" ; Parent "WIPF2--KRT9^KRT9^ENSG00000171403.10" ; ccdsid "CCDS32654.1" ; exon_id "ENSE00001326363.2" ; exon_number 1 ; gene_id "WIPF2--KRT9^KRT9^ENSG00000171403.10" ; gene_name KRT9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133599.4" ; havana_transcript "OTTHUMT00000257707.3" ; hgnc_id "HGNC:6447" ; level 2 ; orig_coord_info "chr17,41571351,41571992,-" ; protein_id "ENSP00000246662.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "WIPF2--KRT9^ENST00000246662.9" ; transcript_name "KRT9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WIPF2--KRT9 HAVANA gene 1001 16889 . + . FI_gene_label "WIPF2^ENSG00000171475.14" ; ID "WIPF2--KRT9^WIPF2^ENSG00000171475.14" ; ccdsid "CCDS11364.1" ; exon_id "ENSE00003596032.1" ; exon_number 2 ; gene_id "WIPF2--KRT9^WIPF2^ENSG00000171475.14" ; gene_name WIPF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133331.4" ; havana_transcript "OTTHUMT00000257157.2" ; hgnc_id "HGNC:30923" ; level 2 ; orig_coord_info "chr17,40256460,40256522,+" ; protein_id "ENSP00000320924.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "WIPF2--KRT9^ENST00000323571.9" ; transcript_name "WIPF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
WIPF2--KRT9 HAVANA mRNA 1001 16889 . + . FI_gene_label "WIPF2^ENSG00000171475.14" ; ID "WIPF2--KRT9^ENST00000323571.9" ; Parent "WIPF2--KRT9^WIPF2^ENSG00000171475.14" ; ccdsid "CCDS11364.1" ; exon_id "ENSE00003596032.1" ; exon_number 2 ; gene_id "WIPF2--KRT9^WIPF2^ENSG00000171475.14" ; gene_name WIPF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133331.4" ; havana_transcript "OTTHUMT00000257157.2" ; hgnc_id "HGNC:30923" ; level 2 ; orig_coord_info "chr17,40256460,40256522,+" ; protein_id "ENSP00000320924.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "WIPF2--KRT9^ENST00000323571.9" ; transcript_name "WIPF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WWTR1--PACS1 HAVANA gene 27380 55225 . + . FI_gene_label "PACS1^ENSG00000175115.13" ; ID "WWTR1--PACS1^PACS1^ENSG00000175115.13" ; ccdsid "CCDS8129.1" ; exon_id "ENSE00002161316.2" ; exon_number 1 ; gene_id "WWTR1--PACS1^PACS1^ENSG00000175115.13" ; gene_name PACS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166889.5" ; havana_transcript "OTTHUMT00000391690.3" ; hgnc_id "HGNC:30032" ; level 2 ; orig_coord_info "chr11,66070487,66070842,+" ; protein_id "ENSP00000316454.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "WWTR1--PACS1^ENST00000320580.9" ; transcript_name "PACS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
WWTR1--PACS1 HAVANA mRNA 27380 55225 . + . FI_gene_label "PACS1^ENSG00000175115.13" ; ID "WWTR1--PACS1^ENST00000320580.9" ; Parent "WWTR1--PACS1^PACS1^ENSG00000175115.13" ; ccdsid "CCDS8129.1" ; exon_id "ENSE00002161316.2" ; exon_number 1 ; gene_id "WWTR1--PACS1^PACS1^ENSG00000175115.13" ; gene_name PACS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166889.5" ; havana_transcript "OTTHUMT00000391690.3" ; hgnc_id "HGNC:30032" ; level 2 ; orig_coord_info "chr11,66070487,66070842,+" ; protein_id "ENSP00000316454.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "WWTR1--PACS1^ENST00000320580.9" ; transcript_name "PACS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WWTR1--PACS1 HAVANA gene 10616 24379 . + . FI_gene_label "WWTR1^ENSG00000018408.15" ; ID "WWTR1--PACS1^WWTR1^ENSG00000018408.15" ; ccdsid "CCDS3144.1" ; exon_id "ENSE00001078038.4" ; exon_number 2 ; gene_id "WWTR1--PACS1^WWTR1^ENSG00000018408.15" ; gene_name WWTR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159614.13" ; havana_transcript "OTTHUMT00000356501.1" ; hgnc_id "HGNC:24042" ; level 2 ; orig_coord_info "chr3,149656876,149657306,-" ; protein_id "ENSP00000353847.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "WWTR1--PACS1^ENST00000360632.8" ; transcript_name "WWTR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
WWTR1--PACS1 HAVANA mRNA 10616 24379 . + . FI_gene_label "WWTR1^ENSG00000018408.15" ; ID "WWTR1--PACS1^ENST00000360632.8" ; Parent "WWTR1--PACS1^WWTR1^ENSG00000018408.15" ; ccdsid "CCDS3144.1" ; exon_id "ENSE00001078038.4" ; exon_number 2 ; gene_id "WWTR1--PACS1^WWTR1^ENSG00000018408.15" ; gene_name WWTR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159614.13" ; havana_transcript "OTTHUMT00000356501.1" ; hgnc_id "HGNC:24042" ; level 2 ; orig_coord_info "chr3,149656876,149657306,-" ; protein_id "ENSP00000353847.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "WWTR1--PACS1^ENST00000360632.8" ; transcript_name "WWTR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
YAP1--CEP126 HAVANA gene 19697 38896 . + . FI_gene_label "CEP126^ENSG00000110318.15" ; ID "YAP1--CEP126^CEP126^ENSG00000110318.15" ; ccdsid "CCDS31658.1" ; exon_id "ENSE00001468391.3" ; exon_number 1 ; gene_id "YAP1--CEP126^CEP126^ENSG00000110318.15" ; gene_name CEP126 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167319.4" ; havana_transcript "OTTHUMT00000394140.4" ; hgnc_id "HGNC:29264" ; level 2 ; orig_coord_info "chr11,101915285,101915412,+" ; protein_id "ENSP00000263468.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "YAP1--CEP126^ENST00000263468.13" ; transcript_name "CEP126-201" ; transcript_support_level 1 ; transcript_type protein_coding
YAP1--CEP126 HAVANA mRNA 19697 38896 . + . FI_gene_label "CEP126^ENSG00000110318.15" ; ID "YAP1--CEP126^ENST00000263468.13" ; Parent "YAP1--CEP126^CEP126^ENSG00000110318.15" ; ccdsid "CCDS31658.1" ; exon_id "ENSE00001468391.3" ; exon_number 1 ; gene_id "YAP1--CEP126^CEP126^ENSG00000110318.15" ; gene_name CEP126 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167319.4" ; havana_transcript "OTTHUMT00000394140.4" ; hgnc_id "HGNC:29264" ; level 2 ; orig_coord_info "chr11,101915285,101915412,+" ; protein_id "ENSP00000263468.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "YAP1--CEP126^ENST00000263468.13" ; transcript_name "CEP126-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
YAP1--CEP126 HAVANA gene 1001 16696 . + . FI_gene_label "YAP1^ENSG00000137693.14" ; ID "YAP1--CEP126^YAP1^ENSG00000137693.14" ; ccdsid "CCDS44716.1" ; exon_id "ENSE00003850849.1" ; exon_number 1 ; gene_id "YAP1--CEP126^YAP1^ENSG00000137693.14" ; gene_name YAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167322.4" ; havana_transcript "OTTHUMT00000394151.2" ; hgnc_id "HGNC:16262" ; level 2 ; orig_coord_info "chr11,102110849,102111169,+" ; protein_id "ENSP00000282441.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "YAP1--CEP126^ENST00000282441.10" ; transcript_name "YAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
YAP1--CEP126 HAVANA mRNA 1001 16696 . + . FI_gene_label "YAP1^ENSG00000137693.14" ; ID "YAP1--CEP126^ENST00000282441.10" ; Parent "YAP1--CEP126^YAP1^ENSG00000137693.14" ; ccdsid "CCDS44716.1" ; exon_id "ENSE00003850849.1" ; exon_number 1 ; gene_id "YAP1--CEP126^YAP1^ENSG00000137693.14" ; gene_name YAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167322.4" ; havana_transcript "OTTHUMT00000394151.2" ; hgnc_id "HGNC:16262" ; level 2 ; orig_coord_info "chr11,102110849,102111169,+" ; protein_id "ENSP00000282441.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "YAP1--CEP126^ENST00000282441.10" ; transcript_name "YAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZC3H7A--GRIN2A HAVANA gene 28851 64742 . + . FI_gene_label "GRIN2A^ENSG00000183454.18" ; ID "ZC3H7A--GRIN2A^GRIN2A^ENSG00000183454.18" ; ccdsid "CCDS10539.1" ; exon_id "ENSE00001525515.1" ; exon_number 2 ; gene_id "ZC3H7A--GRIN2A^GRIN2A^ENSG00000183454.18" ; gene_name GRIN2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000129721.10" ; havana_transcript "OTTHUMT00000268266.2" ; hgnc_id "HGNC:4585" ; level 2 ; orig_coord_info "chr16,10179998,10180411,-" ; protein_id "ENSP00000332549.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZC3H7A--GRIN2A^ENST00000330684.4" ; transcript_name "GRIN2A-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZC3H7A--GRIN2A HAVANA mRNA 28851 64742 . + . FI_gene_label "GRIN2A^ENSG00000183454.18" ; ID "ZC3H7A--GRIN2A^ENST00000330684.4" ; Parent "ZC3H7A--GRIN2A^GRIN2A^ENSG00000183454.18" ; ccdsid "CCDS10539.1" ; exon_id "ENSE00001525515.1" ; exon_number 2 ; gene_id "ZC3H7A--GRIN2A^GRIN2A^ENSG00000183454.18" ; gene_name GRIN2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000129721.10" ; havana_transcript "OTTHUMT00000268266.2" ; hgnc_id "HGNC:4585" ; level 2 ; orig_coord_info "chr16,10179998,10180411,-" ; protein_id "ENSP00000332549.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZC3H7A--GRIN2A^ENST00000330684.4" ; transcript_name "GRIN2A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZC3H7A--GRIN2A HAVANA gene 1001 25339 . + . FI_gene_label "ZC3H7A^ENSG00000122299.12" ; ID "ZC3H7A--GRIN2A^ZC3H7A^ENSG00000122299.12" ; ccdsid "CCDS10550.1" ; exon_id "ENSE00003608101.1" ; exon_number 2 ; gene_id "ZC3H7A--GRIN2A^ZC3H7A^ENSG00000122299.12" ; gene_name ZC3H7A ; gene_type protein_coding ; havana_gene "OTTHUMG00000129825.4" ; havana_transcript "OTTHUMT00000252061.3" ; hgnc_id "HGNC:30959" ; level 2 ; orig_coord_info "chr16,11782287,11782354,-" ; protein_id "ENSP00000347999.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZC3H7A--GRIN2A^ENST00000355758.9" ; transcript_name "ZC3H7A-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZC3H7A--GRIN2A HAVANA mRNA 1001 25339 . + . FI_gene_label "ZC3H7A^ENSG00000122299.12" ; ID "ZC3H7A--GRIN2A^ENST00000355758.9" ; Parent "ZC3H7A--GRIN2A^ZC3H7A^ENSG00000122299.12" ; ccdsid "CCDS10550.1" ; exon_id "ENSE00003608101.1" ; exon_number 2 ; gene_id "ZC3H7A--GRIN2A^ZC3H7A^ENSG00000122299.12" ; gene_name ZC3H7A ; gene_type protein_coding ; havana_gene "OTTHUMG00000129825.4" ; havana_transcript "OTTHUMT00000252061.3" ; hgnc_id "HGNC:30959" ; level 2 ; orig_coord_info "chr16,11782287,11782354,-" ; protein_id "ENSP00000347999.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZC3H7A--GRIN2A^ENST00000355758.9" ; transcript_name "ZC3H7A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ABR--AC007846.1 HAVANA gene 43881 48701 . + . FI_gene_label "AC007846.1^ENSG00000284837.1" ; ID "ABR--AC007846.1^AC007846.1^ENSG00000284837.1" ; exon_id "ENSE00002614732.1" ; exon_number 1 ; gene_id "ABR--AC007846.1^AC007846.1^ENSG00000284837.1" ; gene_name "AC007846.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000192451.1" ; havana_transcript "OTTHUMT00000494182.1" ; level 2 ; orig_coord_info "chr17,5772234,5773027,+" ; tag CAGE_supported_TSS basic ; transcript_id "ABR--AC007846.1^ENST00000563763.5" ; transcript_name "AC007846.1-201" ; transcript_support_level 1 ; transcript_type lncRNA
ABR--AC007846.1 HAVANA RNA 43881 48701 . + . FI_gene_label "AC007846.1^ENSG00000284837.1" ; ID "ABR--AC007846.1^ENST00000563763.5" ; Parent "ABR--AC007846.1^AC007846.1^ENSG00000284837.1" ; exon_id "ENSE00002614732.1" ; exon_number 1 ; gene_id "ABR--AC007846.1^AC007846.1^ENSG00000284837.1" ; gene_name "AC007846.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000192451.1" ; havana_transcript "OTTHUMT00000494182.1" ; level 2 ; orig_coord_info "chr17,5772234,5773027,+" ; tag CAGE_supported_TSS basic ; transcript_id "ABR--AC007846.1^ENST00000563763.5" ; transcript_name "AC007846.1-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
C16orf72--AC022168.1 HAVANA gene 22525 26578 . + . FI_gene_label "AC022168.1^ENSG00000285543.1" ; ID "C16orf72--AC022168.1^AC022168.1^ENSG00000285543.1" ; exon_id "ENSE00003831332.1" ; exon_number 1 ; gene_id "C16orf72--AC022168.1^AC022168.1^ENSG00000285543.1" ; gene_name "AC022168.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000192956.1" ; havana_transcript "OTTHUMT00000499694.1" ; level 2 ; orig_coord_info "chr16,10227409,10227581,-" ; tag basic ; transcript_id "C16orf72--AC022168.1^ENST00000649384.1" ; transcript_name "AC022168.1-201" ; transcript_type lncRNA
C16orf72--AC022168.1 HAVANA RNA 22525 26578 . + . FI_gene_label "AC022168.1^ENSG00000285543.1" ; ID "C16orf72--AC022168.1^ENST00000649384.1" ; Parent "C16orf72--AC022168.1^AC022168.1^ENSG00000285543.1" ; exon_id "ENSE00003831332.1" ; exon_number 1 ; gene_id "C16orf72--AC022168.1^AC022168.1^ENSG00000285543.1" ; gene_name "AC022168.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000192956.1" ; havana_transcript "OTTHUMT00000499694.1" ; level 2 ; orig_coord_info "chr16,10227409,10227581,-" ; tag basic ; transcript_id "C16orf72--AC022168.1^ENST00000649384.1" ; transcript_name "AC022168.1-201" ; transcript_type lncRNA
L1 and L2 created:
DYNC2H1--MIR3976HG HAVANA gene 107019 131964 . + . FI_gene_label "MIR3976HG^ENSG00000261738.7" ; ID "DYNC2H1--MIR3976HG^MIR3976HG^ENSG00000261738.7" ; exon_id "ENSE00002577857.1" ; exon_number 1 ; gene_id "DYNC2H1--MIR3976HG^MIR3976HG^ENSG00000261738.7" ; gene_name MIR3976HG ; gene_type lncRNA ; havana_gene "OTTHUMG00000176112.35" ; havana_transcript "OTTHUMT00000431520.2" ; hgnc_id "HGNC:51104" ; level 2 ; orig_coord_info "chr18,5748819,5748964,+" ; transcript_id "DYNC2H1--MIR3976HG^ENST00000562452.2" ; transcript_name "MIR3976HG-201" ; transcript_support_level 4 ; transcript_type lncRNA
DYNC2H1--MIR3976HG HAVANA RNA 107019 131964 . + . FI_gene_label "MIR3976HG^ENSG00000261738.7" ; ID "DYNC2H1--MIR3976HG^ENST00000562452.2" ; Parent "DYNC2H1--MIR3976HG^MIR3976HG^ENSG00000261738.7" ; exon_id "ENSE00002577857.1" ; exon_number 1 ; gene_id "DYNC2H1--MIR3976HG^MIR3976HG^ENSG00000261738.7" ; gene_name MIR3976HG ; gene_type lncRNA ; havana_gene "OTTHUMG00000176112.35" ; havana_transcript "OTTHUMT00000431520.2" ; hgnc_id "HGNC:51104" ; level 2 ; orig_coord_info "chr18,5748819,5748964,+" ; transcript_id "DYNC2H1--MIR3976HG^ENST00000562452.2" ; transcript_name "MIR3976HG-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
FMNL1--AC130686.1 HAVANA gene 21831 24296 . + . FI_gene_label "AC130686.1^ENSG00000278954.1" ; ID "FMNL1--AC130686.1^AC130686.1^ENSG00000278954.1" ; exon_id "ENSE00003757522.1" ; exon_number 1 ; gene_id "FMNL1--AC130686.1^AC130686.1^ENSG00000278954.1" ; gene_name "AC130686.1" ; gene_type TEC ; havana_gene "OTTHUMG00000179963.1" ; havana_transcript "OTTHUMT00000449097.1" ; level 2 ; orig_coord_info "chr17,41665566,41668031,+" ; tag basic ; transcript_id "FMNL1--AC130686.1^ENST00000622936.1" ; transcript_name "AC130686.1-201" ; transcript_support_level NA ; transcript_type TEC
FMNL1--AC130686.1 HAVANA RNA 21831 24296 . + . FI_gene_label "AC130686.1^ENSG00000278954.1" ; ID "FMNL1--AC130686.1^ENST00000622936.1" ; Parent "FMNL1--AC130686.1^AC130686.1^ENSG00000278954.1" ; exon_id "ENSE00003757522.1" ; exon_number 1 ; gene_id "FMNL1--AC130686.1^AC130686.1^ENSG00000278954.1" ; gene_name "AC130686.1" ; gene_type TEC ; havana_gene "OTTHUMG00000179963.1" ; havana_transcript "OTTHUMT00000449097.1" ; level 2 ; orig_coord_info "chr17,41665566,41668031,+" ; tag basic ; transcript_id "FMNL1--AC130686.1^ENST00000622936.1" ; transcript_name "AC130686.1-201" ; transcript_support_level NA ; transcript_type TEC
L1 and L2 created:
GRIN2A--AC012178.1 HAVANA gene 43857 56021 . + . FI_gene_label "AC012178.1^ENSG00000260071.2" ; ID "GRIN2A--AC012178.1^AC012178.1^ENSG00000260071.2" ; exon_id "ENSE00002608335.1" ; exon_number 1 ; gene_id "GRIN2A--AC012178.1^AC012178.1^ENSG00000260071.2" ; gene_name "AC012178.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000177058.21" ; havana_transcript "OTTHUMT00000435115.1" ; level 2 ; orig_coord_info "chr16,9466655,9467010,+" ; transcript_id "GRIN2A--AC012178.1^ENST00000570038.1" ; transcript_name "AC012178.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
GRIN2A--AC012178.1 HAVANA RNA 43857 56021 . + . FI_gene_label "AC012178.1^ENSG00000260071.2" ; ID "GRIN2A--AC012178.1^ENST00000570038.1" ; Parent "GRIN2A--AC012178.1^AC012178.1^ENSG00000260071.2" ; exon_id "ENSE00002608335.1" ; exon_number 1 ; gene_id "GRIN2A--AC012178.1^AC012178.1^ENSG00000260071.2" ; gene_name "AC012178.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000177058.21" ; havana_transcript "OTTHUMT00000435115.1" ; level 2 ; orig_coord_info "chr16,9466655,9467010,+" ; transcript_id "GRIN2A--AC012178.1^ENST00000570038.1" ; transcript_name "AC012178.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
KIRREL1--AL139010.1 HAVANA gene 23239 25103 . + . FI_gene_label "AL139010.1^ENSG00000236957.7" ; ID "KIRREL1--AL139010.1^AL139010.1^ENSG00000236957.7" ; exon_id "ENSE00001618192.1" ; exon_number 1 ; gene_id "KIRREL1--AL139010.1^AL139010.1^ENSG00000236957.7" ; gene_name "AL139010.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000022437.2" ; havana_transcript "OTTHUMT00000432265.1" ; level 2 ; orig_coord_info "chr1,157929531,157929791,+" ; transcript_id "KIRREL1--AL139010.1^ENST00000422062.1" ; transcript_name "AL139010.1-203" ; transcript_support_level 2 ; transcript_type processed_transcript
KIRREL1--AL139010.1 HAVANA RNA 23239 25103 . + . FI_gene_label "AL139010.1^ENSG00000236957.7" ; ID "KIRREL1--AL139010.1^ENST00000422062.1" ; Parent "KIRREL1--AL139010.1^AL139010.1^ENSG00000236957.7" ; exon_id "ENSE00001618192.1" ; exon_number 1 ; gene_id "KIRREL1--AL139010.1^AL139010.1^ENSG00000236957.7" ; gene_name "AL139010.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000022437.2" ; havana_transcript "OTTHUMT00000432265.1" ; level 2 ; orig_coord_info "chr1,157929531,157929791,+" ; transcript_id "KIRREL1--AL139010.1^ENST00000422062.1" ; transcript_name "AL139010.1-203" ; transcript_support_level 2 ; transcript_type processed_transcript
L1 and L2 created:
NEB--SLC7A14-AS1 HAVANA gene 163195 181126 . + . FI_gene_label "SLC7A14-AS1^ENSG00000285051.2" ; ID "NEB--SLC7A14-AS1^SLC7A14-AS1^ENSG00000285051.2" ; exon_id "ENSE00001951210.1" ; exon_number 1 ; gene_id "NEB--SLC7A14-AS1^SLC7A14-AS1^ENSG00000285051.2" ; gene_name "SLC7A14-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000192432.3" ; havana_transcript "OTTHUMT00000494103.1" ; hgnc_id "HGNC:54092" ; level 2 ; orig_coord_info "chr3,170467282,170467396,+" ; tag CAGE_supported_TSS basic ; transcript_id "NEB--SLC7A14-AS1^ENST00000480067.1" ; transcript_name "SLC7A14-AS1-201" ; transcript_support_level 1 ; transcript_type lncRNA
NEB--SLC7A14-AS1 HAVANA RNA 163195 181126 . + . FI_gene_label "SLC7A14-AS1^ENSG00000285051.2" ; ID "NEB--SLC7A14-AS1^ENST00000480067.1" ; Parent "NEB--SLC7A14-AS1^SLC7A14-AS1^ENSG00000285051.2" ; exon_id "ENSE00001951210.1" ; exon_number 1 ; gene_id "NEB--SLC7A14-AS1^SLC7A14-AS1^ENSG00000285051.2" ; gene_name "SLC7A14-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000192432.3" ; havana_transcript "OTTHUMT00000494103.1" ; hgnc_id "HGNC:54092" ; level 2 ; orig_coord_info "chr3,170467282,170467396,+" ; tag CAGE_supported_TSS basic ; transcript_id "NEB--SLC7A14-AS1^ENST00000480067.1" ; transcript_name "SLC7A14-AS1-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
PACS1--LINC02054 HAVANA gene 33007 40814 . + . FI_gene_label "LINC02054^ENSG00000224153.3" ; ID "PACS1--LINC02054^LINC02054^ENSG00000224153.3" ; exon_id "ENSE00001806070.1" ; exon_number 1 ; gene_id "PACS1--LINC02054^LINC02054^ENSG00000224153.3" ; gene_name LINC02054 ; gene_type lncRNA ; havana_gene "OTTHUMG00000156732.3" ; havana_transcript "OTTHUMT00000345502.2" ; hgnc_id "HGNC:52894" ; level 1 ; orig_coord_info "chr3,184401630,184401685,+" ; tag exp_conf ; transcript_id "PACS1--LINC02054^ENST00000419960.1" ; transcript_name "LINC02054-201" ; transcript_support_level 3 ; transcript_type lncRNA
PACS1--LINC02054 HAVANA RNA 33007 40814 . + . FI_gene_label "LINC02054^ENSG00000224153.3" ; ID "PACS1--LINC02054^ENST00000419960.1" ; Parent "PACS1--LINC02054^LINC02054^ENSG00000224153.3" ; exon_id "ENSE00001806070.1" ; exon_number 1 ; gene_id "PACS1--LINC02054^LINC02054^ENSG00000224153.3" ; gene_name LINC02054 ; gene_type lncRNA ; havana_gene "OTTHUMG00000156732.3" ; havana_transcript "OTTHUMT00000345502.2" ; hgnc_id "HGNC:52894" ; level 1 ; orig_coord_info "chr3,184401630,184401685,+" ; tag exp_conf ; transcript_id "PACS1--LINC02054^ENST00000419960.1" ; transcript_name "LINC02054-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
SRGAP2B--KRT18P42 HAVANA gene 20113 21367 . + . FI_gene_label "KRT18P42^ENSG00000214794.4" ; ID "SRGAP2B--KRT18P42^KRT18P42^ENSG00000214794.4" ; exon_id "ENSE00002019471.1" ; exon_number 1 ; gene_id "SRGAP2B--KRT18P42^KRT18P42^ENSG00000214794.4" ; gene_name KRT18P42 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000162835.1" ; havana_transcript "OTTHUMT00000370688.1" ; hgnc_id "HGNC:33412" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr5,109588338,109589592,+" ; tag pseudo_consens basic ; transcript_id "SRGAP2B--KRT18P42^ENST00000505048.1" ; transcript_name "KRT18P42-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
SRGAP2B--KRT18P42 HAVANA RNA 20113 21367 . + . FI_gene_label "KRT18P42^ENSG00000214794.4" ; ID "SRGAP2B--KRT18P42^ENST00000505048.1" ; Parent "SRGAP2B--KRT18P42^KRT18P42^ENSG00000214794.4" ; exon_id "ENSE00002019471.1" ; exon_number 1 ; gene_id "SRGAP2B--KRT18P42^KRT18P42^ENSG00000214794.4" ; gene_name KRT18P42 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000162835.1" ; havana_transcript "OTTHUMT00000370688.1" ; hgnc_id "HGNC:33412" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr5,109588338,109589592,+" ; tag pseudo_consens basic ; transcript_id "SRGAP2B--KRT18P42^ENST00000505048.1" ; transcript_name "KRT18P42-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
SRGAP2B--MAN2A1-DT HAVANA gene 20113 20640 . + . FI_gene_label "MAN2A1-DT^ENSG00000271849.1" ; ID "SRGAP2B--MAN2A1-DT^MAN2A1-DT^ENSG00000271849.1" ; exon_id "ENSE00003695611.1" ; exon_number 1 ; gene_id "SRGAP2B--MAN2A1-DT^MAN2A1-DT^ENSG00000271849.1" ; gene_name "MAN2A1-DT" ; gene_type lncRNA ; havana_gene "OTTHUMG00000185546.1" ; havana_transcript "OTTHUMT00000470691.1" ; hgnc_id "HGNC:54821" ; level 2 ; orig_coord_info "chr5,109687802,109688329,-" ; tag basic ; transcript_id "SRGAP2B--MAN2A1-DT^ENST00000606424.1" ; transcript_name "MAN2A1-DT-201" ; transcript_support_level NA ; transcript_type lncRNA
SRGAP2B--MAN2A1-DT HAVANA RNA 20113 20640 . + . FI_gene_label "MAN2A1-DT^ENSG00000271849.1" ; ID "SRGAP2B--MAN2A1-DT^ENST00000606424.1" ; Parent "SRGAP2B--MAN2A1-DT^MAN2A1-DT^ENSG00000271849.1" ; exon_id "ENSE00003695611.1" ; exon_number 1 ; gene_id "SRGAP2B--MAN2A1-DT^MAN2A1-DT^ENSG00000271849.1" ; gene_name "MAN2A1-DT" ; gene_type lncRNA ; havana_gene "OTTHUMG00000185546.1" ; havana_transcript "OTTHUMT00000470691.1" ; hgnc_id "HGNC:54821" ; level 2 ; orig_coord_info "chr5,109687802,109688329,-" ; tag basic ; transcript_id "SRGAP2B--MAN2A1-DT^ENST00000606424.1" ; transcript_name "MAN2A1-DT-201" ; transcript_support_level NA ; transcript_type lncRNA
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
TMEM123--SLC7A14-AS1 HAVANA gene 16603 34534 . + . FI_gene_label "SLC7A14-AS1^ENSG00000285051.2" ; ID "TMEM123--SLC7A14-AS1^SLC7A14-AS1^ENSG00000285051.2" ; exon_id "ENSE00001951210.1" ; exon_number 1 ; gene_id "TMEM123--SLC7A14-AS1^SLC7A14-AS1^ENSG00000285051.2" ; gene_name "SLC7A14-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000192432.3" ; havana_transcript "OTTHUMT00000494103.1" ; hgnc_id "HGNC:54092" ; level 2 ; orig_coord_info "chr3,170467282,170467396,+" ; tag CAGE_supported_TSS basic ; transcript_id "TMEM123--SLC7A14-AS1^ENST00000480067.1" ; transcript_name "SLC7A14-AS1-201" ; transcript_support_level 1 ; transcript_type lncRNA
TMEM123--SLC7A14-AS1 HAVANA RNA 16603 34534 . + . FI_gene_label "SLC7A14-AS1^ENSG00000285051.2" ; ID "TMEM123--SLC7A14-AS1^ENST00000480067.1" ; Parent "TMEM123--SLC7A14-AS1^SLC7A14-AS1^ENSG00000285051.2" ; exon_id "ENSE00001951210.1" ; exon_number 1 ; gene_id "TMEM123--SLC7A14-AS1^SLC7A14-AS1^ENSG00000285051.2" ; gene_name "SLC7A14-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000192432.3" ; havana_transcript "OTTHUMT00000494103.1" ; hgnc_id "HGNC:54092" ; level 2 ; orig_coord_info "chr3,170467282,170467396,+" ; tag CAGE_supported_TSS basic ; transcript_id "TMEM123--SLC7A14-AS1^ENST00000480067.1" ; transcript_name "SLC7A14-AS1-201" ; transcript_support_level 1 ; transcript_type lncRNA
778 cases fixed where L3 features have parent feature(s) missing
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--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
1306 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 54 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 1 seconds -------------------------------
------ End checks (done in 1 second) ------
GFF3 file parsed