File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/f84404724d0e5e20785f2ed306f920/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:27:53
                             Started mapping on |	Jun 08 10:34:43
                                    Finished on |	Jun 08 11:16:37
       Mapping speed, Million of reads per hour |	422.25

                          Number of input reads |	294873579
                      Average input read length |	212
                                    UNIQUE READS:
                   Uniquely mapped reads number |	278287538
                        Uniquely mapped reads % |	94.38%
                          Average mapped length |	211.98
                       Number of splices: Total |	206409679
            Number of splices: Annotated (sjdb) |	203241085
                       Number of splices: GT/AG |	204086915
                       Number of splices: GC/AG |	1367647
                       Number of splices: AT/AC |	145532
               Number of splices: Non-canonical |	809585
                      Mismatch rate per base, % |	0.29%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.00
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.71
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	12306849
             % of reads mapped to multiple loci |	4.17%
        Number of reads mapped to too many loci |	675899
             % of reads mapped to too many loci |	0.23%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	3131136
                 % of reads unmapped: too short |	1.06%
                Number of reads unmapped: other |	472157
                     % of reads unmapped: other |	0.16%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%