Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/3e4e8f2c9284b6721de4d3422ae86b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/27c91f0b684312a4f8644d8dae4475/1173_FM_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/3e4e8f2c9284b6721de4d3422ae86b/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 288078176
unpaired = 7567852
MERGED PAIRED END READS = 288078176
MATES PROCESSED = 583724204
TOTAL READS     = 295646028
DISTINCT READS  = 8.48782e+07
DISTINCT COUNTS = 2829
MAX COUNT       = 1581802
COUNTS OF 1     = 3.22358e+07
MAX TERMS       = 100
OBSERVED COUNTS (1581803)
1	32235774
2	19013834
3	11724950
4	7212714
5	4468985
6	2821161
7	1834544
8	1235277
9	860940
10	621993
11	462785
12	352530
13	274871
14	219562
15	176638
16	144587
17	120041
18	100743
19	85807
20	72982
21	64009
22	55425
23	48447
24	43003
25	38361
26	34420
27	30777
28	27758
29	25482
30	23210
31	20914
32	19313
33	17548
34	16127
35	14942
36	13907
37	12988
38	12088
39	11499
40	10296
41	9859
42	9405
43	8666
44	8345
45	7732
46	7513
47	7037
48	6658
49	6231
50	5836
51	5551
52	5360
53	5217
54	4922
55	4832
56	4499
57	4246
58	4061
59	4001
60	3877
61	3587
62	3356
63	3339
64	3247
65	3193
66	2980
67	2863
68	2868
69	2754
70	2679
71	2513
72	2533
73	2427
74	2272
75	2118
76	2228
77	2110
78	1913
79	1995
80	1874
81	1829
82	1808
83	1782
84	1632
85	1645
86	1603
87	1486
88	1500
89	1496
90	1479
91	1437
92	1420
93	1352
94	1337
95	1280
96	1238
97	1201
98	1146
99	1165
100	1190
101	1153
102	1074
103	1038
104	1070
105	971
106	1068
107	954
108	892
109	883
110	879
111	948
112	859
113	858
114	871
115	891
116	812
117	828
118	772
119	794
120	748
121	714
122	726
123	717
124	703
125	665
126	698
127	675
128	641
129	667
130	625
131	603
132	612
133	583
134	546
135	585
136	564
137	556
138	598
139	558
140	510
141	513
142	557
143	497
144	515
145	494
146	485
147	499
148	479
149	495
150	502
151	478
152	429
153	439
154	428
155	434
156	414
157	402
158	404
159	444
160	387
161	366
162	382
163	387
164	363
165	392
166	369
167	353
168	344
169	357
170	338
171	317
172	329
173	324
174	329
175	316
176	347
177	345
178	304
179	309
180	348
181	308
182	308
183	297
184	323
185	303
186	297
187	296
188	266
189	278
190	251
191	282
192	259
193	256
194	255
195	259
196	252
197	245
198	254
199	267
200	243
201	239
202	208
203	223
204	232
205	232
206	222
207	201
208	208
209	234
210	215
211	204
212	207
213	218
214	208
215	241
216	192
217	194
218	173
219	195
220	195
221	197
222	186
223	181
224	182
225	194
226	183
227	175
228	208
229	145
230	167
231	191
232	184
233	172
234	182
235	160
236	146
237	168
238	171
239	153
240	177
241	161
242	179
243	155
244	194
245	142
246	150
247	146
248	166
249	156
250	146
251	155
252	136
253	154
254	161
255	133
256	133
257	146
258	127
259	135
260	144
261	123
262	145
263	150
264	140
265	105
266	125
267	126
268	129
269	136
270	149
271	121
272	120
273	129
274	125
275	122
276	133
277	118
278	128
279	139
280	119
281	101
282	129
283	121
284	115
285	112
286	100
287	137
288	110
289	114
290	108
291	103
292	115
293	122
294	102
295	114
296	94
297	102
298	115
299	115
300	103
301	112
302	95
303	94
304	96
305	94
306	94
307	104
308	103
309	98
310	92
311	93
312	83
313	93
314	102
315	92
316	93
317	96
318	93
319	87
320	82
321	80
322	87
323	93
324	99
325	83
326	79
327	70
328	74
329	82
330	67
331	75
332	73
333	88
334	72
335	76
336	80
337	79
338	79
339	69
340	91
341	74
342	64
343	78
344	85
345	84
346	53
347	70
348	83
349	85
350	74
351	65
352	76
353	66
354	79
355	79
356	55
357	64
358	64
359	60
360	62
361	81
362	64
363	77
364	64
365	77
366	66
367	72
368	67
369	68
370	64
371	46
372	59
373	54
374	63
375	55
376	74
377	70
378	61
379	68
380	63
381	62
382	42
383	48
384	58
385	63
386	59
387	76
388	53
389	60
390	67
391	59
392	50
393	44
394	38
395	54
396	59
397	60
398	48
399	56
400	57
401	40
402	50
403	61
404	62
405	55
406	49
407	51
408	41
409	43
410	53
411	60
412	45
413	47
414	47
415	57
416	50
417	45
418	43
419	40
420	38
421	40
422	35
423	48
424	41
425	59
426	54
427	46
428	50
429	42
430	38
431	45
432	48
433	47
434	46
435	41
436	48
437	53
438	34
439	55
440	52
441	42
442	44
443	49
444	40
445	55
446	38
447	48
448	57
449	46
450	39
451	39
452	47
453	34
454	41
455	57
456	40
457	39
458	33
459	35
460	31
461	39
462	34
463	44
464	35
465	36
466	37
467	42
468	35
469	33
470	36
471	37
472	35
473	34
474	35
475	40
476	41
477	35
478	31
479	43
480	36
481	34
482	33
483	38
484	34
485	33
486	34
487	28
488	31
489	40
490	35
491	26
492	41
493	33
494	31
495	36
496	20
497	24
498	48
499	34
500	43
501	43
502	30
503	41
504	28
505	38
506	25
507	36
508	40
509	34
510	31
511	26
512	30
513	23
514	39
515	41
516	32
517	27
518	30
519	27
520	26
521	28
522	30
523	32
524	38
525	25
526	34
527	27
528	21
529	24
530	21
531	37
532	27
533	30
534	27
535	34
536	30
537	25
538	37
539	18
540	27
541	24
542	32
543	28
544	34
545	25
546	33
547	27
548	21
549	30
550	29
551	29
552	27
553	21
554	27
555	26
556	25
557	26
558	33
559	24
560	33
561	22
562	19
563	27
564	35
565	24
566	21
567	24
568	22
569	29
570	23
571	30
572	19
573	29
574	23
575	28
576	29
577	23
578	19
579	32
580	24
581	18
582	15
583	31
584	19
585	16
586	16
587	25
588	27
589	28
590	12
591	28
592	18
593	23
594	18
595	20
596	32
597	19
598	15
599	20
600	21
601	27
602	29
603	19
604	20
605	12
606	23
607	31
608	20
609	28
610	27
611	9
612	19
613	19
614	13
615	22
616	28
617	27
618	21
619	21
620	15
621	21
622	11
623	19
624	12
625	12
626	28
627	20
628	21
629	18
630	21
631	24
632	20
633	14
634	21
635	15
636	17
637	17
638	27
639	26
640	16
641	18
642	19
643	18
644	24
645	12
646	18
647	12
648	25
649	19
650	26
651	18
652	18
653	16
654	19
655	19
656	16
657	21
658	17
659	18
660	17
661	21
662	17
663	22
664	16
665	27
666	16
667	13
668	10
669	25
670	17
671	14
672	20
673	16
674	22
675	15
676	15
677	12
678	12
679	17
680	11
681	15
682	15
683	15
684	16
685	16
686	19
687	14
688	19
689	20
690	22
691	23
692	13
693	12
694	8
695	12
696	11
697	24
698	19
699	15
700	11
701	15
702	17
703	15
704	14
705	17
706	22
707	12
708	18
709	15
710	20
711	9
712	17
713	18
714	17
715	14
716	21
717	24
718	8
719	12
720	16
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722	14
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725	16
726	15
727	14
728	14
729	6
730	15
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732	13
733	13
734	13
735	17
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737	20
738	12
739	9
740	10
741	11
742	13
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744	12
745	14
746	17
747	13
748	13
749	13
750	11
751	15
752	12
753	11
754	12
755	10
756	11
757	21
758	14
759	21
760	11
761	12
762	11
763	11
764	18
765	12
766	15
767	7
768	19
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770	19
771	9
772	23
773	9
774	5
775	20
776	13
777	7
778	10
779	9
780	13
781	18
782	7
783	12
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785	17
786	17
787	11
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789	6
790	12
791	14
792	9
793	16
794	8
795	16
796	16
797	16
798	10
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800	9
801	16
802	17
803	10
804	9
805	6
806	7
807	14
808	11
809	12
810	5
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812	11
813	11
814	6
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816	8
817	7
818	18
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820	11
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822	7
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825	6
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827	7
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830	7
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832	13
833	8
834	18
835	12
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838	6
839	8
840	7
841	10
842	14
843	11
844	10
845	12
846	9
847	7
848	11
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850	9
851	9
852	9
853	5
854	10
855	4
856	12
857	7
858	10
859	9
860	8
861	7
862	9
863	15
864	8
865	9
866	8
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870	9
871	10
872	8
873	8
874	15
875	9
876	9
877	12
878	9
879	12
880	3
881	6
882	11
883	12
884	8
885	8
886	3
887	5
888	8
889	8
890	7
891	13
892	7
893	5
894	10
895	10
896	3
897	12
898	13
899	10
900	8
901	4
902	9
903	9
904	11
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906	5
907	8
908	4
909	8
910	7
911	7
912	7
913	9
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915	6
916	9
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920	9
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924	13
925	9
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930	14
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932	9
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937	8
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940	4
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942	7
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946	9
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950	7
951	12
952	9
953	9
954	13
955	7
956	11
957	8
958	12
959	7
960	6
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963	8
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967	3
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969	6
970	6
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978	2
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980	2
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987	6
988	7
989	6
990	3
991	6
992	8
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994	6
995	4
996	9
997	7
998	8
999	8
1000	9
1001	11
1002	4
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1004	15
1005	9
1006	6
1007	5
1008	5
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1010	8
1011	12
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1015	7
1016	8
1017	8
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1021	6
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1024	4
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1033	6
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1038	9
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1048	15
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1080	5
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1092	2
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1094	6
1095	5
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1097	3
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1099	6
1100	3
1101	3
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1103	4
1104	3
1105	7
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1110	7
1111	2
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1113	3
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1116	6
1117	5
1118	6
1119	10
1120	9
1121	10
1122	2
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1124	2
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1126	5
1127	8
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1129	5
1130	3
1131	4
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1139	7
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1151	9
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1171	7
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1173	6
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1177	3
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1182	5
1184	12
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1189	9
1190	1
1191	3
1192	6
1193	7
1194	6
1195	2
1196	2
1197	3
1198	3
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1202	6
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1234	3
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1301	2
1302	7
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1322	6
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1348	4
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1352	6
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1356	3
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1360	6
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1363	2
1364	3
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1366	4
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1368	1
1369	3
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1371	1
1372	8
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1374	2
1375	4
1376	2
1377	3
1378	2
1379	1
1380	3
1381	2
1382	3
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1385	1
1387	5
1388	3
1390	4
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1393	4
1395	1
1396	1
1397	2
1398	4
1399	3
1400	3
1401	3
1402	3
1403	3
1404	1
1406	5
1407	1
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1409	2
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1449	7
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1471	6
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1500	3
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1502	6
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1504	2
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1526	7
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1547	6
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1552	1
1556	1
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1572	2
1573	3
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1575	2
1578	3
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1583	4
1584	3
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1588	2
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1591	1
1592	1
1593	1
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1596	1
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1600	2
1601	2
1602	2
1603	1
1604	2
1605	4
1606	3
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1684	1
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1686	4
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1689	1
1690	2
1691	3
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1694	1
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1696	3
1697	3
1699	4
1701	1
1702	2
1703	3
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1707	3
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1709	1
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1723	2
1725	4
1726	3
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1730	5
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1746	1
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1752	2
1754	2
1755	2
1756	3
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1765	1
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1769	1
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1773	2
1777	4
1778	5
1779	2
1780	1
1781	4
1782	2
1783	1
1784	2
1786	1
1787	2
1788	1
1789	3
1790	4
1791	3
1792	3
1795	1
1796	2
1798	3
1800	2
1801	3
1802	3
1803	1
1804	1
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1806	3
1807	4
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1809	3
1811	1
1813	3
1814	6
1815	1
1816	1
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1822	1
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1824	1
1825	1
1826	1
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1828	1
1829	1
1830	1
1831	1
1832	3
1833	1
1834	1
1838	2
1840	1
1842	1
1843	1
1846	3
1847	1
1848	2
1850	2
1851	2
1852	2
1853	3
1854	1
1855	1
1856	1
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1858	1
1859	3
1860	3
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1864	1
1865	3
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1867	1
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1871	1
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1874	1
1875	5
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1878	2
1879	3
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1883	1
1884	1
1886	4
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1889	1
1893	1
1895	1
1896	1
1898	3
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1900	1
1901	2
1902	2
1906	1
1907	1
1910	3
1911	2
1914	2
1916	1
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1919	3
1920	1
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1924	4
1926	1
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1929	2
1930	2
1931	4
1932	1
1933	2
1934	1
1935	1
1938	2
1940	2
1941	2
1942	1
1943	3
1944	2
1945	2
1946	1
1947	2
1950	1
1951	1
1952	2
1953	3
1954	2
1957	1
1958	1
1961	2
1962	1
1963	2
1964	1
1968	3
1969	4
1970	1
1971	1
1972	1
1973	2
1974	1
1975	2
1977	1
1980	2
1981	1
1982	1
1983	2
1984	2
1986	3
1987	1
1988	1
1989	1
1990	4
1992	1
1994	1
1998	1
2000	2
2001	3
2002	1
2005	1
2006	2
2007	2
2008	3
2011	1
2012	2
2013	3
2014	2
2017	1
2018	1
2019	2
2020	1
2025	2
2026	2
2027	1
2028	1
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2030	1
2031	1
2033	1
2034	1
2035	1
2036	4
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2044	1
2046	4
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2049	1
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2057	2
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2062	3
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2145	1
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2148	1
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2151	1
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2154	3
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2159	1
2160	1
2161	1
2162	1
2166	1
2168	1
2169	1
2170	1
2171	1
2174	1
2177	1
2178	1
2181	1
2183	1
2184	1
2185	3
2188	1
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2190	1
2192	1
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2196	2
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2198	1
2200	2
2201	2
2203	1
2205	1
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2216	1
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2237	1
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2240	2
2241	1
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2258	1
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2304	1
2305	1
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2323	1
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2327	2
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2336	2
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2342	2
2346	2
2347	1
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2388	3
2392	1
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2396	1
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2400	2
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2423	3
2424	1
2425	1
2426	5
2428	1
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2433	1
2435	1
2436	1
2439	1
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2447	1
2455	1
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2462	3
2463	1
2465	1
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2467	1
2469	1
2470	1
2473	1
2475	1
2476	1
2477	1
2483	2
2485	1
2487	1
2488	1
2489	1
2491	3
2496	1
2499	2
2501	2
2503	1
2505	1
2506	1
2507	1
2508	1
2509	2
2510	1
2511	1
2512	2
2513	1
2519	3
2521	1
2526	1
2532	2
2536	2
2538	1
2544	3
2545	1
2550	1
2552	1
2554	1
2555	2
2557	1
2563	1
2565	1
2570	1
2571	1
2576	1
2578	1
2581	1
2582	1
2584	2
2585	1
2586	1
2590	1
2592	1
2593	1
2594	2
2595	2
2603	1
2605	1
2607	1
2609	1
2610	1
2614	1
2618	1
2619	2
2620	1
2623	1
2624	3
2625	1
2626	2
2627	1
2629	1
2630	1
2631	2
2638	1
2640	2
2643	1
2644	1
2647	1
2653	1
2655	1
2658	1
2659	1
2660	2
2664	2
2667	1
2668	1
2676	1
2677	1
2681	2
2682	1
2684	2
2686	1
2687	1
2689	1
2691	2
2692	1
2693	1
2695	1
2696	1
2698	1
2699	1
2701	1
2703	3
2708	1
2709	1
2711	1
2718	1
2721	2
2722	5
2723	1
2724	3
2727	1
2728	2
2729	1
2730	1
2731	1
2733	1
2734	1
2736	1
2741	2
2747	1
2751	3
2752	1
2756	1
2764	1
2765	2
2766	2
2767	1
2768	1
2773	1
2774	1
2778	1
2779	1
2781	1
2782	1
2785	2
2786	1
2787	1
2790	1
2792	1
2799	1
2801	1
2802	1
2803	2
2804	1
2810	1
2816	1
2817	1
2818	1
2819	1
2820	1
2825	1
2832	1
2835	2
2836	2
2838	1
2839	1
2841	1
2848	1
2852	1
2857	1
2858	1
2861	1
2863	1
2867	2
2868	2
2869	1
2871	1
2872	1
2876	1
2877	1
2878	1
2885	1
2894	1
2896	1
2902	1
2903	1
2904	1
2905	1
2906	1
2907	1
2909	1
2911	1
2912	1
2917	1
2919	1
2923	1
2924	1
2927	1
2928	1
2932	2
2934	1
2936	1
2938	1
2942	1
2943	1
2944	1
2945	1
2947	1
2957	3
2961	1
2963	1
2965	1
2967	1
2972	2
2976	1
2977	1
2980	2
2981	4
2982	1
2988	1
2991	1
2993	1
2994	1
3001	1
3003	1
3004	1
3009	1
3012	1
3014	1
3016	1
3018	1
3023	1
3030	1
3035	1
3037	2
3040	1
3045	1
3053	1
3054	1
3061	2
3063	1
3065	1
3069	2
3070	1
3071	1
3085	1
3093	1
3094	1
3095	1
3096	1
3100	1
3102	2
3108	1
3110	2
3112	2
3113	1
3120	1
3122	1
3125	1
3126	1
3127	1
3136	1
3141	1
3151	1
3157	1
3158	1
3160	1
3166	1
3170	1
3173	2
3174	1
3176	1
3179	2
3187	2
3190	1
3195	2
3197	2
3199	1
3207	1
3215	1
3216	1
3217	1
3228	1
3229	1
3231	1
3235	1
3245	1
3246	1
3247	1
3248	1
3249	1
3254	2
3255	2
3260	2
3263	1
3264	1
3266	1
3267	1
3272	1
3274	1
3275	2
3277	1
3282	1
3283	1
3285	1
3292	1
3294	1
3297	1
3298	1
3303	1
3309	1
3311	1
3317	1
3318	2
3322	1
3323	1
3324	1
3327	1
3328	1
3329	2
3338	1
3340	1
3342	1
3350	1
3351	1
3353	1
3356	1
3365	1
3368	1
3379	1
3381	1
3386	1
3390	1
3394	1
3398	1
3400	1
3402	1
3405	1
3414	1
3416	1
3421	1
3441	1
3443	1
3448	1
3451	1
3455	1
3458	1
3467	1
3471	1
3477	1
3480	1
3484	2
3485	1
3499	1
3502	1
3513	2
3520	1
3525	1
3526	1
3527	1
3538	1
3549	1
3550	1
3551	1
3552	1
3553	1
3555	1
3556	1
3563	1
3569	1
3573	1
3578	1
3582	1
3583	1
3600	1
3602	1
3603	1
3611	1
3612	1
3614	1
3618	1
3621	1
3622	1
3626	1
3628	1
3629	1
3640	1
3642	1
3647	1
3648	1
3651	2
3653	1
3662	1
3667	1
3677	1
3683	1
3684	1
3685	1
3687	1
3688	1
3713	1
3722	2
3727	1
3728	2
3730	1
3745	1
3746	1
3752	1
3754	1
3760	3
3763	1
3778	1
3781	1
3791	1
3802	2
3812	1
3816	1
3817	2
3818	1
3821	1
3828	3
3834	1
3839	1
3846	2
3848	1
3849	1
3850	1
3861	2
3863	1
3864	1
3867	1
3882	1
3896	1
3907	1
3909	1
3912	1
3915	1
3923	1
3927	2
3932	2
3933	1
3934	1
3938	1
3949	1
3955	1
3963	2
3969	1
3970	1
3979	1
3993	1
3995	1
3996	1
4003	1
4006	1
4022	2
4026	1
4032	1
4034	1
4041	1
4044	1
4047	1
4053	1
4056	1
4060	1
4069	1
4071	1
4074	1
4085	1
4092	1
4097	1
4102	1
4110	1
4119	1
4141	1
4152	1
4154	1
4159	1
4164	1
4168	1
4170	1
4177	1
4192	1
4208	1
4214	1
4218	1
4225	1
4228	1
4234	1
4235	1
4254	1
4273	1
4276	1
4290	1
4292	1
4313	1
4315	1
4316	1
4326	1
4340	1
4364	1
4370	1
4378	1
4395	1
4401	1
4404	1
4415	1
4417	1
4428	1
4442	1
4446	1
4455	1
4458	1
4473	1
4485	1
4506	1
4513	1
4521	1
4522	1
4539	2
4541	1
4547	1
4554	1
4567	1
4594	1
4607	1
4621	1
4622	1
4644	1
4645	1
4649	2
4669	1
4673	1
4695	1
4706	1
4717	1
4729	1
4732	1
4741	1
4747	1
4756	1
4761	1
4789	1
4808	1
4839	1
4845	1
4846	1
4876	1
4891	1
4893	1
4903	1
4912	1
4913	1
4954	1
4957	1
4964	1
4966	1
4982	1
4992	1
4996	1
5068	1
5073	1
5091	1
5102	1
5113	1
5115	2
5119	1
5125	1
5129	1
5136	1
5145	1
5159	1
5187	1
5206	1
5230	1
5238	1
5244	1
5247	1
5257	1
5261	1
5269	1
5307	1
5315	1
5318	1
5325	1
5342	1
5381	1
5394	1
5395	1
5419	1
5429	1
5447	1
5463	1
5464	1
5520	1
5533	1
5544	1
5545	1
5551	1
5554	1
5557	1
5571	1
5580	1
5587	1
5624	1
5659	1
5668	1
5692	1
5695	1
5709	1
5713	1
5723	1
5733	1
5761	1
5790	1
5796	1
5828	2
5847	1
5867	1
5914	1
5957	1
5985	1
5992	1
6002	1
6006	1
6012	1
6024	1
6039	1
6053	1
6060	1
6127	1
6130	1
6145	1
6173	1
6187	1
6308	1
6329	1
6332	1
6343	1
6367	1
6392	1
6399	1
6401	1
6422	1
6426	1
6475	1
6493	1
6513	1
6579	1
6612	1
6650	1
6694	1
6702	1
6706	1
6725	2
6754	1
6802	1
6805	1
6883	1
6936	1
6959	1
6962	1
6995	1
7053	1
7217	1
7281	1
7426	1
7499	1
7500	1
7503	1
7505	1
7516	1
7565	1
7572	1
7576	1
7578	1
7598	1
7629	1
7819	1
7893	1
8312	1
8319	1
8361	1
8457	1
8459	1
8945	1
9003	1
9304	1
9332	1
9364	1
9390	1
9599	1
9637	1
9643	1
9858	1
9863	1
10111	1
10237	1
10371	1
10540	1
10586	1
11183	1
11416	1
11513	1
11801	1
12234	1
12283	1
12498	1
12959	1
14511	1
14855	1
15362	1
15868	1
16690	1
16762	1
18091	1
20326	1
20667	1
22072	1
24559	1
25046	1
27231	1
29986	1
31875	1
93522	1
1581802	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.................._.........................._......................_.._
...._..................._.........
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]