File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/fd1ef6fd5d83a9eb790c2820f043ad/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (1173_CH0_T1_RNA_SLD_01_A23T55JLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/fd1ef6fd5d83a9eb790c2820f043ad/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/80353402972cd3b6d106e0e06b9c49/1173_CH0_T1_RNA_SLD_01_A23T55JLT4_1.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/fd1ef6fd5d83a9eb790c2820f043ad/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/91fcc8715e8bd1b989bb38f9ba570b/1173_CH0_T1_RNA_SLD_01_A23T55JLT4_1
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 1173_CH0_T1_RNA_SLD_01_A23T55JLT4_1/abundance.h5
Successfully converted 1173_CH0_T1_RNA_SLD_01_A23T55JLT4_1/abundance.h5 to 1173_CH0_T1_RNA_SLD_01_A23T55JLT4_1_kallisto_mqc.tsv
  Sample: 1173_CH0_T1_RNA_SLD_01_A23T55JLT4_1
  Mean Fragment Length: 108.9 bp
  Median Fragment Length: 104.0 bp
  pct_mito_est_counts: 0.004%
  pct_ribo_est_counts: 0.716%
  pct_hk_est_counts: 0.358%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.008%
  pct_ribo_tpm: 2.253%
  pct_hk_tpm: 0.58%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.03%