Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/363eba166e988cf76c8e6b793254d1/1173_FM_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/3b3563d6f28835ef08a8948084b398/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/3b3563d6f28835ef08a8948084b398/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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Processed 585000000 records
paired = 289443553
unpaired = 6561775
MERGED PAIRED END READS = 289443553
MATES PROCESSED = 585448881
TOTAL READS     = 296005328
DISTINCT READS  = 1.0221e+08
DISTINCT COUNTS = 2422
MAX COUNT       = 1445161
COUNTS OF 1     = 4.77761e+07
MAX TERMS       = 100
OBSERVED COUNTS (1445162)
1	47776103
2	22976584
3	12191669
4	6697075
5	3845777
6	2336268
7	1499865
8	1012382
9	714146
10	524921
11	397271
12	306968
13	243735
14	197136
15	162029
16	134011
17	113742
18	96214
19	82933
20	71857
21	63012
22	55237
23	48789
24	43300
25	39088
26	34765
27	31507
28	28498
29	25634
30	23663
31	21716
32	19833
33	18098
34	16764
35	15515
36	14353
37	13496
38	12162
39	11661
40	10843
41	10170
42	9577
43	9181
44	8271
45	7852
46	7575
47	7253
48	6738
49	6513
50	5896
51	5790
52	5548
53	5136
54	5003
55	4713
56	4491
57	4329
58	4082
59	4078
60	3746
61	3740
62	3550
63	3447
64	3300
65	3035
66	3010
67	2909
68	2763
69	2678
70	2570
71	2511
72	2422
73	2304
74	2216
75	2193
76	2196
77	1980
78	2035
79	1883
80	1853
81	1836
82	1755
83	1568
84	1631
85	1569
86	1508
87	1467
88	1463
89	1425
90	1430
91	1340
92	1306
93	1261
94	1217
95	1141
96	1159
97	1038
98	1071
99	1130
100	1105
101	1061
102	1065
103	1016
104	989
105	953
106	926
107	909
108	896
109	847
110	817
111	872
112	769
113	780
114	798
115	730
116	732
117	694
118	629
119	731
120	698
121	704
122	667
123	653
124	647
125	607
126	583
127	553
128	562
129	576
130	539
131	554
132	571
133	568
134	508
135	513
136	527
137	517
138	486
139	470
140	478
141	447
142	451
143	463
144	465
145	450
146	435
147	444
148	391
149	398
150	408
151	412
152	377
153	392
154	363
155	397
156	385
157	374
158	349
159	315
160	353
161	316
162	317
163	349
164	334
165	318
166	368
167	289
168	297
169	299
170	283
171	292
172	294
173	290
174	274
175	244
176	287
177	297
178	287
179	232
180	262
181	238
182	235
183	252
184	243
185	240
186	230
187	227
188	245
189	219
190	221
191	229
192	218
193	233
194	231
195	229
196	220
197	218
198	200
199	179
200	210
201	198
202	198
203	194
204	175
205	178
206	202
207	202
208	178
209	189
210	180
211	162
212	159
213	180
214	192
215	178
216	183
217	146
218	163
219	164
220	148
221	158
222	170
223	158
224	154
225	154
226	163
227	148
228	118
229	128
230	158
231	137
232	140
233	144
234	142
235	165
236	135
237	136
238	135
239	131
240	150
241	114
242	136
243	138
244	138
245	131
246	133
247	112
248	111
249	129
250	129
251	127
252	116
253	112
254	119
255	111
256	105
257	109
258	96
259	104
260	103
261	97
262	120
263	98
264	111
265	110
266	99
267	103
268	105
269	105
270	106
271	114
272	90
273	124
274	90
275	100
276	90
277	110
278	83
279	88
280	98
281	73
282	89
283	79
284	83
285	90
286	101
287	90
288	98
289	71
290	86
291	92
292	93
293	69
294	63
295	70
296	74
297	68
298	79
299	67
300	61
301	72
302	84
303	66
304	75
305	79
306	67
307	72
308	75
309	79
310	66
311	72
312	63
313	67
314	74
315	67
316	82
317	72
318	64
319	72
320	58
321	63
322	72
323	66
324	73
325	76
326	67
327	59
328	49
329	63
330	52
331	54
332	69
333	58
334	46
335	74
336	57
337	48
338	56
339	64
340	56
341	47
342	60
343	57
344	55
345	58
346	34
347	66
348	70
349	57
350	50
351	53
352	55
353	48
354	47
355	47
356	60
357	35
358	54
359	54
360	44
361	36
362	46
363	56
364	46
365	52
366	46
367	41
368	54
369	46
370	52
371	41
372	58
373	50
374	51
375	45
376	45
377	50
378	37
379	47
380	44
381	36
382	37
383	45
384	39
385	57
386	40
387	58
388	40
389	48
390	41
391	45
392	43
393	41
394	54
395	32
396	39
397	49
398	33
399	47
400	46
401	37
402	43
403	49
404	43
405	40
406	35
407	39
408	35
409	35
410	34
411	31
412	41
413	44
414	48
415	36
416	37
417	38
418	35
419	34
420	31
421	31
422	39
423	34
424	29
425	26
426	35
427	39
428	36
429	30
430	37
431	32
432	42
433	24
434	46
435	32
436	31
437	19
438	34
439	29
440	34
441	32
442	44
443	43
444	25
445	32
446	26
447	33
448	29
449	26
450	26
451	30
452	47
453	27
454	29
455	24
456	23
457	26
458	27
459	22
460	27
461	38
462	26
463	37
464	35
465	41
466	21
467	29
468	24
469	29
470	16
471	35
472	27
473	24
474	32
475	37
476	31
477	22
478	34
479	37
480	25
481	28
482	37
483	24
484	16
485	16
486	23
487	27
488	29
489	32
490	29
491	17
492	25
493	30
494	36
495	20
496	23
497	30
498	16
499	19
500	25
501	26
502	36
503	22
504	29
505	16
506	20
507	20
508	17
509	26
510	21
511	19
512	22
513	24
514	18
515	22
516	17
517	19
518	20
519	23
520	21
521	20
522	27
523	21
524	20
525	21
526	16
527	28
528	23
529	19
530	20
531	17
532	14
533	23
534	23
535	20
536	21
537	20
538	20
539	19
540	24
541	24
542	23
543	16
544	13
545	18
546	19
547	13
548	17
549	19
550	18
551	15
552	25
553	17
554	8
555	22
556	15
557	17
558	19
559	22
560	19
561	19
562	9
563	14
564	13
565	17
566	17
567	26
568	18
569	18
570	21
571	14
572	17
573	18
574	20
575	21
576	23
577	15
578	16
579	13
580	12
581	23
582	19
583	19
584	11
585	20
586	20
587	17
588	10
589	14
590	17
591	19
592	18
593	10
594	17
595	22
596	13
597	18
598	14
599	18
600	9
601	21
602	10
603	15
604	15
605	25
606	21
607	15
608	13
609	19
610	14
611	12
612	16
613	18
614	17
615	16
616	8
617	13
618	11
619	12
620	12
621	15
622	14
623	16
624	3
625	18
626	13
627	15
628	19
629	9
630	9
631	10
632	14
633	13
634	11
635	20
636	11
637	10
638	16
639	10
640	11
641	20
642	8
643	14
644	6
645	14
646	8
647	17
648	8
649	6
650	11
651	13
652	12
653	11
654	12
655	12
656	13
657	12
658	13
659	16
660	11
661	16
662	12
663	14
664	17
665	16
666	13
667	8
668	8
669	15
670	12
671	7
672	12
673	6
674	12
675	16
676	15
677	10
678	9
679	6
680	10
681	10
682	15
683	13
684	6
685	9
686	12
687	9
688	14
689	12
690	6
691	14
692	13
693	7
694	7
695	14
696	10
697	14
698	10
699	13
700	9
701	9
702	13
703	5
704	9
705	10
706	6
707	14
708	11
709	11
710	17
711	10
712	5
713	10
714	7
715	15
716	10
717	9
718	15
719	14
720	8
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722	5
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724	7
725	18
726	11
727	6
728	10
729	6
730	10
731	13
732	8
733	11
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735	8
736	7
737	6
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740	9
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744	11
745	7
746	8
747	11
748	10
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750	6
751	7
752	5
753	12
754	8
755	7
756	10
757	11
758	6
759	9
760	9
761	12
762	3
763	6
764	13
765	5
766	9
767	8
768	5
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770	9
771	4
772	10
773	10
774	1
775	5
776	7
777	6
778	9
779	10
780	5
781	8
782	3
783	9
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785	10
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790	8
791	11
792	5
793	8
794	3
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796	7
797	6
798	6
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800	7
801	6
802	6
803	9
804	10
805	9
806	9
807	6
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810	9
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825	11
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830	8
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832	12
833	3
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838	4
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840	8
841	9
842	9
843	7
844	7
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846	6
847	10
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850	4
851	6
852	9
853	3
854	2
855	6
856	6
857	3
858	5
859	10
860	7
861	8
862	8
863	11
864	5
865	6
866	3
867	3
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870	2
871	5
872	6
873	4
874	4
875	9
876	7
877	7
878	6
879	4
880	6
881	3
882	8
883	4
884	7
885	7
886	9
887	11
888	6
889	3
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891	8
892	1
893	4
894	6
895	6
896	6
897	5
898	4
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900	6
901	7
902	4
903	6
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906	3
907	6
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910	8
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912	4
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924	4
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930	1
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937	5
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940	7
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950	5
951	8
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954	4
955	1
956	5
957	11
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960	3
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963	3
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967	4
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969	4
970	9
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978	4
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980	7
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987	5
989	7
990	8
991	3
992	6
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995	3
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998	4
999	5
1000	8
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1002	5
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1004	3
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1006	5
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1008	4
1009	4
1010	4
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1016	3
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1019	6
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1021	4
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1024	4
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1038	4
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1080	1
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1100	3
1101	4
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1103	1
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1111	4
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1121	7
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1129	2
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1177	3
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1190	2
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1200	1
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1234	3
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1301	5
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1471	2
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1500	1
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1643	6
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1739	2
1742	1
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1746	1
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1754	1
1756	3
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1758	4
1759	1
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1763	3
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1771	1
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1781	1
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1783	1
1785	2
1786	1
1787	2
1791	2
1792	2
1794	2
1795	1
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1799	1
1800	3
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1853	3
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1857	1
1858	4
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1890	3
1892	1
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1900	1
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1918	1
1920	1
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1924	3
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1930	2
1932	1
1933	1
1934	1
1935	1
1936	1
1938	1
1939	2
1940	1
1943	2
1945	1
1947	1
1948	1
1949	1
1951	1
1953	1
1957	1
1958	1
1959	1
1961	1
1963	1
1966	3
1968	1
1969	2
1970	1
1971	3
1975	1
1978	1
1979	1
1980	2
1986	1
1987	2
1992	2
1993	1
1994	2
1997	2
1998	2
2001	5
2002	2
2003	1
2006	2
2007	1
2008	1
2009	1
2014	1
2016	1
2017	2
2018	2
2019	2
2023	1
2024	3
2028	2
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2036	1
2039	1
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2052	3
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2100	1
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2110	2
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2222	1
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3117	1
3127	1
3130	1
3146	1
3148	1
3149	1
3159	1
3164	1
3168	1
3179	1
3180	1
3185	1
3192	1
3194	1
3195	1
3197	1
3198	1
3199	1
3206	1
3222	1
3233	1
3235	1
3243	2
3250	2
3253	1
3256	1
3260	1
3261	1
3266	2
3273	1
3275	1
3283	1
3285	1
3303	1
3307	1
3308	1
3310	1
3317	1
3320	1
3324	2
3341	1
3343	1
3345	1
3366	1
3378	1
3381	1
3383	1
3385	1
3386	1
3389	1
3392	1
3393	1
3395	1
3396	2
3398	1
3405	1
3414	1
3424	1
3436	1
3437	1
3438	1
3444	1
3454	1
3457	1
3459	1
3461	2
3466	1
3470	2
3475	2
3479	1
3484	1
3485	1
3488	1
3493	1
3499	1
3500	1
3503	1
3513	2
3515	1
3520	1
3521	1
3524	1
3533	1
3538	2
3549	1
3557	1
3564	1
3565	1
3573	1
3587	2
3599	1
3600	1
3608	1
3617	1
3629	1
3634	1
3643	1
3657	1
3679	1
3681	1
3684	1
3690	1
3691	2
3693	3
3696	1
3701	2
3706	1
3713	1
3717	1
3732	1
3733	1
3738	1
3743	1
3760	1
3774	1
3784	1
3785	1
3789	1
3791	1
3794	1
3797	1
3800	1
3819	1
3828	1
3835	1
3844	1
3851	1
3857	1
3858	1
3861	1
3862	1
3868	1
3879	1
3885	1
3890	1
3915	1
3918	1
3941	1
3987	1
4001	1
4011	1
4021	1
4024	1
4034	1
4038	1
4045	1
4046	1
4050	2
4051	1
4055	1
4063	1
4078	1
4081	1
4083	1
4089	1
4110	1
4113	1
4130	1
4140	1
4150	1
4155	1
4205	1
4207	1
4225	1
4234	2
4255	1
4283	1
4292	1
4296	1
4297	1
4345	1
4351	1
4363	1
4370	1
4389	1
4465	1
4488	1
4512	1
4525	1
4539	1
4566	1
4613	1
4619	1
4633	1
4644	1
4679	1
4702	1
4708	1
4715	1
4720	1
4721	1
4750	1
4760	1
4770	1
4777	1
4785	1
4804	1
4827	1
4865	1
4981	1
4984	1
4990	1
4997	1
5001	1
5017	1
5022	1
5049	1
5061	1
5069	1
5073	1
5077	1
5098	1
5106	1
5123	1
5161	1
5202	1
5210	1
5211	1
5268	1
5287	1
5318	1
5338	1
5354	1
5422	1
5423	1
5424	1
5426	1
5452	1
5454	1
5460	1
5512	1
5534	1
5538	1
5593	1
5596	1
5630	1
5658	2
5715	1
5775	1
5782	1
5856	1
6031	1
6053	1
6112	1
6159	1
6194	1
6196	1
6291	1
6364	1
6453	1
6494	1
6542	1
6718	1
6785	1
6829	1
6847	1
6889	1
6893	1
6915	1
6973	1
7228	1
7751	1
7851	1
8046	1
8110	1
8214	1
8271	1
8275	1
8328	1
8337	1
8348	1
8425	1
8519	1
8577	1
8818	1
8848	1
9191	1
9381	1
9714	1
9895	1
10388	1
10569	1
10613	1
10958	1
11380	1
11670	1
11698	1
12757	1
14271	1
14625	1
15519	1
17576	1
17896	1
20867	1
22597	1
24526	1
26429	1
27835	1
86336	1
1445161	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
................._....._.........._..........................._..._.....
.................................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]