.command.sh - Workdir - NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ (1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/af4b5c91eb5d02e1b9e61c5ee52bea/.command.sh
Size: 1.2 KB
Task: NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ (1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2)
Attempt

Content

#!/bin/bash -euo pipefail
cat 1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2_S82_L001_R1_001.fastq.gz 1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2_S82_L002_R1_001.fastq.gz 1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2_S82_L003_R1_001.fastq.gz 1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2_S82_L004_R1_001.fastq.gz 1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2_S82_L005_R1_001.fastq.gz 1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2_S82_L006_R1_001.fastq.gz 1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2_S82_L007_R1_001.fastq.gz 1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2_S82_L008_R1_001.fastq.gz > 1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2_R1.fastq.gz
cat 1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2_S82_L001_R2_001.fastq.gz 1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2_S82_L002_R2_001.fastq.gz 1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2_S82_L003_R2_001.fastq.gz 1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2_S82_L004_R2_001.fastq.gz 1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2_S82_L005_R2_001.fastq.gz 1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2_S82_L006_R2_001.fastq.gz 1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2_S82_L007_R2_001.fastq.gz 1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2_S82_L008_R2_001.fastq.gz > 1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2_R2.fastq.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ":
    cat: $(cat --version | head -1 | awk '{print $NF}')
END_VERSIONS