Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/54e9b91609498aaa11fb645bf0c014/1173_GXL_T1_RNA_SLD_01_A23T55JLT4_2_2.fastp.fastq.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/a1ccd2b280e10d7203dec9d257a011/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/a1ccd2b280e10d7203dec9d257a011/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/54e9b91609498aaa11fb645bf0c014/1173_GXL_T1_RNA_SLD_01_A23T55JLT4_2_1.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/60446498b55aa6efc029283a184293/1173_GXL_T1_RNA_SLD_01_A23T55JLT4_2.Chimeric.out.junction
==> STAGING COMPLETE (6 inputs)

-ctat genome lib [/tmp/nxf.vSoyjyEqMw/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.vSoyjyEqMw/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary
-sample contains 282756743 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.vSoyjyEqMw/ctat_genome_lib_build_dir  -J /tmp/nxf.vSoyjyEqMw/1173_GXL_T1_RNA_SLD_01_A23T55JLT4_2.Chimeric.out.junction  -O /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.vSoyjyEqMw/1173_GXL_T1_RNA_SLD_01_A23T55JLT4_2.Chimeric.out.junction
-building interval tree based on /tmp/nxf.vSoyjyEqMw/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

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-building interval tree based on /tmp/nxf.vSoyjyEqMw/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

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[3000000], rate=63291.14/min 
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[3080000], rate=62985.69/min 
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[3100000], rate=63008.13/min 
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[3210000], rate=63690.48/min 
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[3280000], rate=63813.23/min 
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[3320000], rate=63218.03/min 
[3330000], rate=63088.10/min 
[3340000], rate=62919.94/min 
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[3390000], rate=62681.05/min 
[3400000], rate=62672.81/min 
[3410000], rate=62645.44/min 
[3420000], rate=62656.49/min -building interval tree based on /tmp/nxf.vSoyjyEqMw/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=85714.29/min 
[20000], rate=80000.00/min 
[30000], rate=78260.87/min 
[40000], rate=77419.35/min 
[50000], rate=81081.08/min 
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[100000], rate=88235.29/min 
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[1000000], rate=57859.21/min 
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[1310000], rate=51949.77/min 
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[1370000], rate=51024.21/min 
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[1400000], rate=50602.41/min 
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[1430000], rate=50146.11/min 
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[1470000], rate=49467.19/min 
[1480000], rate=49415.69/min 
[1490000], rate=49392.27/min 
[1500000], rate=49315.07/min 
[1510000], rate=49292.71/min 
[1520000], rate=49164.42/min 
[1530000], rate=49038.46/min 
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[1700000], rate=48456.06/min 
[1710000], rate=48487.71/min 
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[1730000], rate=48527.35/min 
[1740000], rate=48558.14/min 
[1750000], rate=48543.69/min 
[1760000], rate=48551.72/min 
[1770000], rate=48581.88/min 
[1780000], rate=48633.88/min 
[1790000], rate=48685.40/min 
[1800000], rate=48736.46/min 
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[1850000], rate=49071.62/min 
[1860000], rate=49184.66/min 
[1870000], rate=49275.36/min 
[1880000], rate=49408.67/min 
[1890000], rate=49519.65/min 
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[1910000], rate=49739.58/min 
[1920000], rate=49848.55/min 
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[1940000], rate=50150.80/min 
[1950000], rate=50279.33/min 
[1960000], rate=50407.20/min 
[1970000], rate=50534.42/min 
[1980000], rate=50510.20/min 
[1990000], rate=50189.16/min 
[2000000], rate=49792.53/min 
[2010000], rate=49466.78/min 
[2020000], rate=49168.36/min 
[2030000], rate=48856.80/min 
[2040000], rate=48532.91/min 
[2050000], rate=48311.08/min 
[2060000], rate=48037.31/min 
[2070000], rate=47806.00/min 
[2080000], rate=47669.98/min 
[2090000], rate=47464.04/min 
[2100000], rate=47297.30/min 
[2110000], rate=47098.21/min 
[2120000], rate=46989.29/min 
[2130000], rate=46830.34/min 
[2140000], rate=46690.91/min 
[2150000], rate=46520.01/min 
[2160000], rate=46385.11/min 
[2170000], rate=46285.10/min 
[2180000], rate=46219.08/min 
[2190000], rate=46105.26/min 
[2200000], rate=45993.03/min 
[2210000], rate=45898.23/min 
[2220000], rate=45851.98/min 
[2230000], rate=45774.89/min 
[2240000], rate=45760.98/min 
[2250000], rate=45700.74/min 
[2260000], rate=45656.57/min 
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[2280000], rate=45539.28/min 
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[2380000], rate=45579.32/min 
[2390000], rate=45625.20/min 
[2400000], rate=45685.28/min 
[2410000], rate=45716.09/min 
[2420000], rate=45761.11/min 
[2430000], rate=45805.84/min 
[2440000], rate=45864.66/min 
[2450000], rate=45908.81/min 
[2460000], rate=45952.68/min 
[2470000], rate=45982.00/min 
[2480000], rate=46011.13/min 
[2490000], rate=46054.25/min 
[2500000], rate=46082.95/min 
[2510000], rate=46083.23/min 
[2520000], rate=46111.62/min 
[2530000], rate=46181.93/min 
[2540000], rate=46265.94/min 
[2550000], rate=46335.55/min 
[2560000], rate=46418.86/min 
[2570000], rate=46487.79/min 
[2580000], rate=46556.39/min 
[2590000], rate=46652.66/min 
[2600000], rate=46734.57/min 
[2610000], rate=46816.14/min 
[2620000], rate=46897.37/min 
[2630000], rate=46992.26/min 
[2640000], rate=47072.81/min 
[2650000], rate=47153.02/min 
[2660000], rate=47246.89/min 
[2670000], rate=47354.42/min 
[2680000], rate=47447.62/min 
[2690000], rate=47554.51/min 
[2700000], rate=47647.06/min 
[2710000], rate=47739.28/min 
[2720000], rate=51256.28/min 
[2730000], rate=51299.72/min 
[2740000], rate=51342.91/min 
[2750000], rate=51385.86/min 
[2760000], rate=51428.57/min 
[2770000], rate=51486.99/min 
[2780000], rate=51545.12/min 
[2790000], rate=51602.96/min 
[2800000], rate=51660.52/min 
[2810000], rate=51733.66/min 
[2820000], rate=51790.63/min 
[2830000], rate=51863.16/min 
[2840000], rate=51935.39/min 
[2850000], rate=52023.12/min 
[2860000], rate=52110.54/min 
[2870000], rate=52276.87/min 
[2880000], rate=52411.28/min 
[2890000], rate=52497.73/min 
[2900000], rate=52583.86/min 
[2910000], rate=52669.68/min 
[2920000], rate=52771.08/min 
[2930000], rate=52856.28/min 
[2940000], rate=52941.18/min 
[2950000], rate=53025.76/min 
[2960000], rate=53125.93/min 
[2970000], rate=53209.91/min 
[2980000], rate=53293.59/min 
[2990000], rate=53392.86/min 
[3000000], rate=53507.73/min 
[3010000], rate=53542.84/min 
[3020000], rate=53561.93/min 
[3030000], rate=53580.90/min 
[3040000], rate=53615.52/min 
[3050000], rate=53649.96/min 
[3060000], rate=53684.21/min 
[3070000], rate=53765.32/min 
[3080000], rate=53783.47/min 
[3090000], rate=53817.13/min 
[3100000], rate=53850.61/min 
[3110000], rate=53899.48/min 
[3120000], rate=53948.13/min 
[3130000], rate=54012.08/min 
[3140000], rate=54075.77/min 
[3150000], rate=54123.71/min 
[3160000], rate=54186.91/min 
[3170000], rate=54234.39/min 
[3180000], rate=54297.10/min 
[3190000], rate=54359.56/min 
[3200000], rate=54421.77/min 
[3210000], rate=54483.73/min 
[3220000], rate=54576.27/min 
[3230000], rate=54668.55/min 
[3240000], rate=54729.73/min 
[3250000], rate=54806.07/min 
[3260000], rate=54882.15/min 
[3270000], rate=54957.98/min 
[3280000], rate=55048.95/min 
[3290000], rate=55139.66/min 
[3300000], rate=55260.95/min 
[3310000], rate=55351.17/min 
[3320000], rate=55425.71/min 
[3330000], rate=55515.42/min 
[3340000], rate=55589.46/min 
[3350000], rate=55663.25/min 
[3360000], rate=55752.21/min 
[3370000], rate=55825.51/min 
[3380000], rate=55913.98/min 
[3390000], rate=56002.20/min 
[3400000], rate=56074.77/min 
[3410000], rate=56162.50/min -building interval tree based on /tmp/nxf.vSoyjyEqMw/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

[10000], rate=100000.00/min 
[20000], rate=100000.00/min 
[30000], rate=94736.84/min 
[40000], rate=109090.91/min 
[50000], rate=120000.00/min 
[60000], rate=133333.33/min 
[70000], rate=131250.00/min 
[80000], rate=133333.33/min 
[90000], rate=135000.00/min 
[100000], rate=133333.33/min 
[110000], rate=143478.26/min 
[120000], rate=156521.74/min 
[130000], rate=169565.22/min 
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[150000], rate=176470.59/min 
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[180000], rate=166153.85/min 
[190000], rate=172727.27/min 
[200000], rate=173913.04/min 
[210000], rate=165789.47/min 
[220000], rate=159036.14/min 
[230000], rate=153333.33/min 
[240000], rate=158241.76/min 
[250000], rate=159574.47/min 
[260000], rate=159183.67/min 
[270000], rate=157281.55/min 
[280000], rate=158490.57/min 
[290000], rate=156756.76/min 
[300000], rate=157894.74/min 
[310000], rate=163157.89/min 
[320000], rate=168421.05/min 
[330000], rate=172173.91/min 
[340000], rate=174358.97/min 
[350000], rate=172131.15/min 
[360000], rate=171428.57/min 
[370000], rate=168181.82/min 
[380000], rate=168888.89/min 
[390000], rate=173333.33/min 
[400000], rate=169014.08/min 
[410000], rate=165100.67/min 
[420000], rate=162580.65/min 
[430000], rate=159259.26/min 
[440000], rate=160000.00/min 
[450000], rate=160714.29/min 
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[480000], rate=161797.75/min 
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[500000], rate=163934.43/min 
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[530000], rate=171891.89/min 
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[560000], rate=168000.00/min 
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[580000], rate=165714.29/min 
[590000], rate=163888.89/min 
[600000], rate=161434.98/min 
[610000], rate=160526.32/min 
[620000], rate=161739.13/min 
[630000], rate=162931.03/min 
[640000], rate=162025.32/min 
[650000], rate=162500.00/min 
[660000], rate=160975.61/min 
[670000], rate=163414.63/min 
[680000], rate=165853.66/min 
[690000], rate=168292.68/min 
[700000], rate=170040.49/min 
[710000], rate=169047.62/min 
[720000], rate=168093.39/min 
[730000], rate=167175.57/min 
[740000], rate=166292.13/min 
[750000], rate=160142.35/min 
[760000], rate=140307.69/min 
[770000], rate=122546.42/min 
[780000], rate=109345.79/min 
[790000], rate=98750.00/min 
[800000], rate=91254.75/min 
[810000], rate=84816.75/min 
[820000], rate=79483.04/min 
[830000], rate=75113.12/min 
[840000], rate=71489.36/min 
[850000], rate=68181.82/min 
[860000], rate=65151.52/min 
[870000], rate=62440.19/min 
[880000], rate=60411.90/min 
[890000], rate=58616.90/min 
[900000], rate=57264.05/min 
[910000], rate=55431.47/min 
[920000], rate=53540.25/min 
[930000], rate=52052.24/min 
[940000], rate=50402.14/min 
[950000], rate=48801.37/min 
[960000], rate=47564.00/min 
[970000], rate=46672.01/min 
[980000], rate=45723.17/min 
[990000], rate=44796.38/min 
[1000000], rate=44117.65/min 
[1010000], rate=43472.02/min 
[1020000], rate=42797.20/min 
[1030000], rate=42213.11/min 
[1040000], rate=41324.50/min 
[1050000], rate=40410.52/min 
[1060000], rate=39824.67/min 
[1070000], rate=39483.39/min 
[1080000], rate=39036.14/min 
[1090000], rate=38652.48/min 
[1100000], rate=38238.70/min 
[1110000], rate=37797.96/min 
[1120000], rate=37479.09/min 
[1130000], rate=37089.72/min 
[1140000], rate=36695.28/min 
[1150000], rate=36373.22/min 
[1160000], rate=36062.18/min 
[1170000], rate=35816.33/min 
[1180000], rate=35560.02/min 
[1190000], rate=35399.11/min 
[1200000], rate=35259.55/min 
[1210000], rate=35089.42/min 
[1220000], rate=34973.72/min 
[1230000], rate=34877.13/min 
[1240000], rate=34733.89/min 
[1250000], rate=34674.06/min 
[1260000], rate=34599.54/min 
[1270000], rate=34557.82/min 
[1280000], rate=34439.46/min 
[1290000], rate=34338.95/min 
[1300000], rate=34285.71/min 
[1310000], rate=34233.45/min 
[1320000], rate=34196.89/min 
[1330000], rate=34073.44/min 
[1340000], rate=34053.37/min 
[1350000], rate=34033.61/min 
[1360000], rate=34042.55/min 
[1370000], rate=34065.48/min 
[1380000], rate=34032.06/min 
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[1400000], rate=34049.45/min 
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[1430000], rate=34074.66/min 
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[1480000], rate=34180.14/min 
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[1500000], rate=34259.61/min 
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[1540000], rate=34375.00/min 
[1550000], rate=34406.22/min 
[1560000], rate=34437.09/min 
[1570000], rate=34492.86/min 
[1580000], rate=34548.10/min 
[1590000], rate=34602.83/min 
[1600000], rate=34669.56/min 
[1610000], rate=34760.71/min 
[1620000], rate=34851.20/min 
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[1680000], rate=35380.84/min 
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[1700000], rate=35589.67/min 
[1710000], rate=35674.55/min 
[1720000], rate=35758.84/min 
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[1770000], rate=36282.88/min 
[1780000], rate=36388.42/min 
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[1800000], rate=36635.01/min 
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[1820000], rate=36866.98/min 
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[1860000], rate=37361.90/min 
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[1920000], rate=37500.00/min 
[1930000], rate=37548.64/min 
[1940000], rate=37609.05/min 
[1950000], rate=37669.03/min 
[1960000], rate=37728.59/min 
[1970000], rate=37799.81/min 
[1980000], rate=37882.65/min 
[1990000], rate=37965.02/min 
[2000000], rate=38046.92/min 
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[2040000], rate=38321.85/min 
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[2060000], rate=38456.75/min 
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[2140000], rate=39134.41/min 
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[2180000], rate=39552.46/min 
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[2210000], rate=39867.71/min 
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[2240000], rate=40191.39/min 
[2250000], rate=40310.54/min 
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[2270000], rate=40535.71/min 
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[2290000], rate=40650.89/min 
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[2310000], rate=40633.25/min 
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[2330000], rate=40663.18/min 
[2340000], rate=40719.26/min 
[2350000], rate=40751.45/min 
[2360000], rate=40771.67/min 
[2370000], rate=40815.15/min 
[2380000], rate=40835.00/min 
[2390000], rate=40866.34/min 
[2400000], rate=40897.47/min 
[2410000], rate=40928.39/min 
[2420000], rate=40959.10/min 
[2430000], rate=41001.12/min 
[2440000], rate=41054.40/min 
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[2460000], rate=41148.59/min 
[2470000], rate=41201.00/min 
[2480000], rate=41241.69/min 
[2490000], rate=41293.53/min 
[2500000], rate=41345.09/min 
[2510000], rate=41407.75/min 
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[2550000], rate=41678.02/min 
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[2590000], rate=41954.64/min 
[2600000], rate=42003.23/min 
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[2650000], rate=42309.74/min 
[2660000], rate=42367.93/min 
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[2680000], rate=42483.49/min 
[2690000], ra[2720000], rate=47831.18/min 
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[2740000], rate=48014.02/min 
[2750000], rate=48104.96/min 
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[2780000], rate=48319.81/min 
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[3370000], rate=46354.88/min 
[3380000], rate=46428.57/min 
[3390000], rate=46502.06/min 
[3400000], rate=46585.98/min 
[3410000], rate=46659.06/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.vSoyjyEqMw/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 6000000.00 reads per min processed...  
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 4394366.20 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.vSoyjyEqMw/1173_GXL_T1_RNA_SLD_01_A23T55JLT4_2.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.vSoyjyEqMw/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -738382.905517
EM: Round [1] log likelihood: -738031.935643
EM: Round [2] log likelihood: -737901.962592
EM: Round [3] log likelihood: -737839.900609
EM: Round [4] log likelihood: -737807.013740
EM: Round [5] log likelihood: -737788.491680
EM: Round [6] log likelihood: -737777.513483
EM: Round [7] log likelihood: -737770.671155
EM: Round [8] log likelihood: -737766.190934
EM: Round [9] log likelihood: -737763.118675
EM: Round [10] log likelihood: -737760.922802
EM: Round [11] log likelihood: -737759.295769
EM: Round [12] log likelihood: -737758.052611
EM: Round [13] log likelihood: -737757.077761
EM: Round [14] log likelihood: -737756.296351
EM: Round [15] log likelihood: -737755.658222
EM: Round [16] log likelihood: -737755.128734
EM: Round [17] log likelihood: -737754.683311
EM: Round [18] log likelihood: -737754.304094
EM: Round [19] log likelihood: -737753.977829
EM: Round [20] log likelihood: -737753.694500
EM: Round [21] log likelihood: -737753.446406
EM: Round [22] log likelihood: -737753.227547
EM: Round [23] log likelihood: -737753.033182
EM: Round [24] log likelihood: -737752.859522
EM: Round [25] log likelihood: -737752.703505
EM: Round [26] log likelihood: -737752.562634
EM: Round [27] log likelihood: -737752.434856
EM: Round [28] log likelihood: -737752.318463
EM: Round [29] log likelihood: -737752.212030
EM: Round [30] log likelihood: -737752.114357
EM: Round [31] log likelihood: -737752.024426
EM: Round [32] log likelihood: -737751.941368
EM: Round [33] log likelihood: -737751.864440
EM: Round [34] log likelihood: -737751.793000
EM: Round [35] log likelihood: -737751.726492
EM: Round [36] log likelihood: -737751.664432
EM: Round [37] log likelihood: -737751.606398
EM: Round [38] log likelihood: -737751.552018
EM: Round [39] log likelihood: -737751.500966
EM: Round [40] log likelihood: -737751.452951
EM: Round [41] log likelihood: -737751.407717
EM: Round [42] log likelihood: -737751.365036
EM: Round [43] log likelihood: -737751.324702
EM: Round [44] log likelihood: -737751.286534
EM: Round [45] log likelihood: -737751.250366
EM: Round [46] log likelihood: -737751.216051
EM: Round [47] log likelihood: -737751.183456
EM: Round [48] log likelihood: -737751.152458
EM: Round [49] log likelihood: -737751.122948
EM: Round [50] log likelihood: -737751.094826
EM: Round [51] log likelihood: -737751.068001
EM: Round [52] log likelihood: -737751.042389
EM: Round [53] log likelihood: -737751.017916
EM: Round [54] log likelihood: -737750.994510
EM: Round [55] log likelihood: -737750.972108
EM: Round [56] log likelihood: -737750.950650
EM: Round [57] log likelihood: -737750.930083
EM: Round [58] log likelihood: -737750.910356
EM: Round [59] log likelihood: -737750.891422
EM: Round [60] log likelihood: -737750.873238
EM: Round [61] log likelihood: -737750.855765
EM: Round [62] log likelihood: -737750.838965
EM: Round [63] log likelihood: -737750.822803
EM: Round [64] log likelihood: -737750.807249
EM: Round [65] log likelihood: -737750.792270
EM: Round [66] log likelihood: -737750.777840
EM: Round [67] log likelihood: -737750.763933
EM: Round [68] log likelihood: -737750.750522
EM: Round [69] log likelihood: -737750.737587
EM: Round [70] log likelihood: -737750.725104
EM: Round [71] log likelihood: -737750.713054
EM: Round [72] log likelihood: -737750.701417
EM: Round [73] log likelihood: -737750.690176
EM: Round [74] log likelihood: -737750.679313
EM: Round [75] log likelihood: -737750.668812
EM: Round [76] log likelihood: -737750.658659
EM: Round [77] log likelihood: -737750.648839
EM: Round [78] log likelihood: -737750.639338
EM: Round [79] log likelihood: -737750.630143
EM: Round [80] log likelihood: -737750.621243
EM: Round [81] log likelihood: -737750.612626
EM: Round [82] log likelihood: -737750.604281
EM: Round [83] log likelihood: -737750.596197
EM: Round [84] log likelihood: -737750.588365
EM: Round [85] log likelihood: -737750.580774
EM: Round [86] log likelihood: -737750.573417
EM: Round [87] log likelihood: -737750.566285
EM: Round [88] log likelihood: -737750.559369
EM: Round [89] log likelihood: -737750.552661
EM: Round [90] log likelihood: -737750.546155
EM: Round [91] log likelihood: -737750.539843
EM: Round [92] log likelihood: -737750.533718
EM: Round [93] log likelihood: -737750.527774
EM: Round [94] log likelihood: -737750.522004
EM: Round [95] log likelihood: -737750.516403
EM: Round [96] log likelihood: -737750.510965
EM: Round [97] log likelihood: -737750.505684
EM: Round [98] log likelihood: -737750.500555
EM: Round [99] log likelihood: -737750.495573
EM: Round [100] log likelihood: -737750.490734
EM: Round [101] log likelihood: -737750.486033
EM: Round [102] log likelihood: -737750.481464
EM: Round [103] log likelihood: -737750.477024
EM: Round [104] log likelihood: -737750.472709
EM: Round [105] log likelihood: -737750.468515
EM: Round [106] log likelihood: -737750.464438
EM: Round [107] log likelihood: -737750.460474
EM: Round [108] log likelihood: -737750.456620
EM: Round [109] log likelihood: -737750.452872
EM: Round [110] log likelihood: -737750.449227
EM: Round [111] log likelihood: -737750.445683
EM: Round [112] log likelihood: -737750.442234
EM: Round [113] log likelihood: -737750.438880
EM: Round [114] log likelihood: -737750.435617
EM: Round [115] log likelihood: -737750.432442
EM: Round [116] log likelihood: -737750.429353
EM: Round [117] log likelihood: -737750.426346
EM: Round [118] log likelihood: -737750.423421
EM: Round [119] log likelihood: -737750.420574
EM: Round [120] log likelihood: -737750.417802
EM: Round [121] log likelihood: -737750.415104
EM: Round [122] log likelihood: -737750.412478
EM: Round [123] log likelihood: -737750.409921
EM: Round [124] log likelihood: -737750.407432
EM: Round [125] log likelihood: -737750.405008
EM: Round [126] log likelihood: -737750.402648
EM: Round [127] log likelihood: -737750.400349
EM: Round [128] log likelihood: -737750.398111
EM: Round [129] log likelihood: -737750.395931
EM: Round [130] log likelihood: -737750.393807
EM: Round [131] log likelihood: -737750.391739
EM: Round [132] log likelihood: -737750.389724
EM: Round [133] log likelihood: -737750.387761
EM: Round [134] log likelihood: -737750.385849
EM: Round [135] log likelihood: -737750.383986
EM: Round [136] log likelihood: -737750.382170
EM: Round [137] log likelihood: -737750.380401
EM: Round [138] log likelihood: -737750.378678
EM: Round [139] log likelihood: -737750.376998
EM: Round [140] log likelihood: -737750.375360
EM: Round [141] log likelihood: -737750.373765
EM: Round [142] log likelihood: -737750.372210
EM: Round [143] log likelihood: -737750.370694
EM: Round [144] log likelihood: -737750.369216
EM: Round [145] log likelihood: -737750.367776
EM: Round [146] log likelihood: -737750.366371
EM: Round [147] log likelihood: -737750.365002
EM: Round [148] log likelihood: -737750.363667
EM: Round [149] log likelihood: -737750.362366
EM: Round [150] log likelihood: -737750.361097
EM: Round [151] log likelihood: -737750.359859
EM: Round [152] log likelihood: -737750.358653
EM: Round [153] log likelihood: -737750.357476
EM: Round [154] log likelihood: -737750.356329
EM: Round [155] log likelihood: -737750.355209
EM: Round [156] log likelihood: -737750.354118
EM: Round [157] log likelihood: -737750.353053
EM: Round [158] log likelihood: -737750.352015
EM: Round [159] log likelihood: -737750.351002
EM: Round [160] log likelihood: -737750.350013
EM: Round [161] log likelihood: -737750.349049
EM: Round [162] log likelihood: -737750.348109
EM: Round [163] log likelihood: -737750.347192
EM: Round [164] log likelihood: -737750.346296
EM: Round [165] log likelihood: -737750.345423
EM: Round [166] log likelihood: -737750.344571
EM: Round [167] log likelihood: -737750.343740
EM: Round [168] log likelihood: -737750.342928
EM: Round [169] log likelihood: -737750.342137
EM: Round [170] log likelihood: -737750.341364
EM: Round [171] log likelihood: -737750.340610
EM: Round [172] log likelihood: -737750.339874
EM: Round [173] log likelihood: -737750.339156
EM: Round [174] log likelihood: -737750.338455
EM: Round [175] log likelihood: -737750.337771
EM: Round [176] log likelihood: -737750.337103
EM: Round [177] log likelihood: -737750.336452
EM: Round [178] log likelihood: -737750.335815
EM: Round [179] log likelihood: -737750.335194
EM: Round [180] log likelihood: -737750.334588
EM: Round [181] log likelihood: -737750.333996
EM: Round [182] log likelihood: -737750.333418
EM: Round [183] log likelihood: -737750.332854
EM: Round [184] log likelihood: -737750.332304
EM: Round [185] log likelihood: -737750.331766
EM: Round [186] log likelihood: -737750.331241
EM: Round [187] log likelihood: -737750.330728
EM: Round [188] log likelihood: -737750.330228
EM: Round [189] log likelihood: -737750.329739
EM: Round [190] log likelihood: -737750.329262
EM: Round [191] log likelihood: -737750.328796
EM: Round [192] log likelihood: -737750.328340
EM: Round [193] log likelihood: -737750.327896
EM: Round [194] log likelihood: -737750.327462
EM: Round [195] log likelihood: -737750.327038
EM: Round [196] log likelihood: -737750.326624
EM: Round [197] log likelihood: -737750.326219
EM: Round [198] log likelihood: -737750.325824
EM: Round [199] log likelihood: -737750.325439
EM: Round [200] log likelihood: -737750.325062
EM: Round [201] log likelihood: -737750.324694
EM: Round [202] log likelihood: -737750.324334
EM: Round [203] log likelihood: -737750.323983
EM: Round [204] log likelihood: -737750.323640
EM: Round [205] log likelihood: -737750.323305
EM: Round [206] log likelihood: -737750.322977
EM: Round [207] log likelihood: -737750.322657
EM: Round [208] log likelihood: -737750.322345
EM: Round [209] log likelihood: -737750.322039
EM: Round [210] log likelihood: -737750.321741
EM: Round [211] log likelihood: -737750.321449
EM: Round [212] log likelihood: -737750.321165
EM: Round [213] log likelihood: -737750.320886
EM: Round [214] log likelihood: -737750.320614
EM: Round [215] log likelihood: -737750.320349
EM: Round [216] log likelihood: -737750.320089
EM: Round [217] log likelihood: -737750.319835
EM: Round [218] log likelihood: -737750.319587
EM: Round [219] log likelihood: -737750.319345
EM: Round [220] log likelihood: -737750.319108
EM: Round [221] log likelihood: -737750.318877
EM: Round [222] log likelihood: -737750.318651
EM: Round [223] log likelihood: -737750.318430
EM: Round [224] log likelihood: -737750.318214
EM: Round [225] log likelihood: -737750.318003
EM: Round [226] log likelihood: -737750.317796
EM: Round [227] log likelihood: -737750.317594
EM: Round [228] log likelihood: -737750.317397
EM: Round [229] log likelihood: -737750.317205
EM: Round [230] log likelihood: -737750.317016
EM: Round [231] log likelihood: -737750.316832
EM: Round [232] log likelihood: -737750.316652
EM: Round [233] log likelihood: -737750.316476
EM: Round [234] log likelihood: -737750.316304
EM: Round [235] log likelihood: -737750.316136
EM: Round [236] log likelihood: -737750.315972
EM: Round [237] log likelihood: -737750.315811
EM: Round [238] log likelihood: -737750.315654
EM: Round [239] log likelihood: -737750.315500
EM: Round [240] log likelihood: -737750.315350
EM: Round [241] log likelihood: -737750.315203
EM: Round [242] log likelihood: -737750.315060
EM: Round [243] log likelihood: -737750.314919
EM: Round [244] log likelihood: -737750.314782
EM: Round [245] log likelihood: -737750.314648
EM: Round [246] log likelihood: -737750.314517
EM: Round [247] log likelihood: -737750.314388
EM: Round [248] log likelihood: -737750.314263
EM: Round [249] log likelihood: -737750.314140
EM: Round [250] log likelihood: -737750.314020
EM: Round [251] log likelihood: -737750.313903
EM: Round [252] log likelihood: -737750.313788
EM: Round [253] log likelihood: -737750.313676
EM: Round [254] log likelihood: -737750.313566
EM: Round [255] log likelihood: -737750.313459
EM: Round [256] log likelihood: -737750.313354
EM: Round [257] log likelihood: -737750.313251
EM: Round [258] log likelihood: -737750.313151
EM: Round [259] log likelihood: -737750.313053
EM: Stopping iterations at round 259 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -737236.056470
EM: Round [1] log likelihood: -736932.347663
EM: Round [2] log likelihood: -736824.072935
EM: Round [3] log likelihood: -736774.097858
EM: Round [4] log likelihood: -736748.307035
EM: Round [5] log likelihood: -736734.115905
EM: Round [6] log likelihood: -736725.903039
EM: Round [7] log likelihood: -736720.917579
EM: Round [8] log likelihood: -736717.747729
EM: Round [9] log likelihood: -736715.642199
EM: Round [10] log likelihood: -736714.186655
EM: Round [11] log likelihood: -736713.144031
EM: Round [12] log likelihood: -736712.373568
EM: Round [13] log likelihood: -736711.788615
EM: Round [14] log likelihood: -736711.333968
EM: Round [15] log likelihood: -736710.973313
EM: Round [16] log likelihood: -736710.682059
EM: Round [17] log likelihood: -736710.443112
EM: Round [18] log likelihood: -736710.244304
EM: Round [19] log likelihood: -736710.076797
EM: Round [20] log likelihood: -736709.934047
EM: Round [21] log likelihood: -736709.811131
EM: Round [22] log likelihood: -736709.704290
EM: Round [23] log likelihood: -736709.610613
EM: Round [24] log likelihood: -736709.527820
EM: Round [25] log likelihood: -736709.454106
EM: Round [26] log likelihood: -736709.388027
EM: Round [27] log likelihood: -736709.328416
EM: Round [28] log likelihood: -736709.274325
EM: Round [29] log likelihood: -736709.224973
EM: Round [30] log likelihood: -736709.179718
EM: Round [31] log likelihood: -736709.138024
EM: Round [32] log likelihood: -736709.099443
EM: Round [33] log likelihood: -736709.063597
EM: Round [34] log likelihood: -736709.030168
EM: Round [35] log likelihood: -736708.998883
EM: Round [36] log likelihood: -736708.969510
EM: Round [37] log likelihood: -736708.941851
EM: Round [38] log likelihood: -736708.915734
EM: Round [39] log likelihood: -736708.891009
EM: Round [40] log likelihood: -736708.867548
EM: Round [41] log likelihood: -736708.845237
EM: Round [42] log likelihood: -736708.823979
EM: Round [43] log likelihood: -736708.803685
EM: Round [44] log likelihood: -736708.784280
EM: Round [45] log likelihood: -736708.765696
EM: Round [46] log likelihood: -736708.747872
EM: Round [47] log likelihood: -736708.730755
EM: Round [48] log likelihood: -736708.714298
EM: Round [49] log likelihood: -736708.698457
EM: Round [50] log likelihood: -736708.683193
EM: Round [51] log likelihood: -736708.668472
EM: Round [52] log likelihood: -736708.654262
EM: Round [53] log likelihood: -736708.640535
EM: Round [54] log likelihood: -736708.627265
EM: Round [55] log likelihood: -736708.614427
EM: Round [56] log likelihood: -736708.602000
EM: Round [57] log likelihood: -736708.589965
EM: Round [58] log likelihood: -736708.578302
EM: Round [59] log likelihood: -736708.566994
EM: Round [60] log likelihood: -736708.556027
EM: Round [61] log likelihood: -736708.545386
EM: Round [62] log likelihood: -736708.535056
EM: Round [63] log likelihood: -736708.525025
EM: Round [64] log likelihood: -736708.515282
EM: Round [65] log likelihood: -736708.505815
EM: Round [66] log likelihood: -736708.496615
EM: Round [67] log likelihood: -736708.487670
EM: Round [68] log likelihood: -736708.478973
EM: Round [69] log likelihood: -736708.470514
EM: Round [70] log likelihood: -736708.462285
EM: Round [71] log likelihood: -736708.454279
EM: Round [72] log likelihood: -736708.446487
EM: Round [73] log likelihood: -736708.438904
EM: Round [74] log likelihood: -736708.431522
EM: Round [75] log likelihood: -736708.424335
EM: Round [76] log likelihood: -736708.417336
EM: Round [77] log likelihood: -736708.410521
EM: Round [78] log likelihood: -736708.403883
EM: Round [79] log likelihood: -736708.397418
EM: Round [80] log likelihood: -736708.391119
EM: Round [81] log likelihood: -736708.384983
EM: Round [82] log likelihood: -736708.379004
EM: Round [83] log likelihood: -736708.373177
EM: Round [84] log likelihood: -736708.367500
EM: Round [85] log likelihood: -736708.361966
EM: Round [86] log likelihood: -736708.356573
EM: Round [87] log likelihood: -736708.351316
EM: Round [88] log likelihood: -736708.346191
EM: Round [89] log likelihood: -736708.341196
EM: Round [90] log likelihood: -736708.336326
EM: Round [91] log likelihood: -736708.331577
EM: Round [92] log likelihood: -736708.326948
EM: Round [93] log likelihood: -736708.322433
EM: Round [94] log likelihood: -736708.318031
EM: Round [95] log likelihood: -736708.313739
EM: Round [96] log likelihood: -736708.309553
EM: Round [97] log likelihood: -736708.305470
EM: Round [98] log likelihood: -736708.301488
EM: Round [99] log likelihood: -736708.297605
EM: Round [100] log likelihood: -736708.293817
EM: Round [101] log likelihood: -736708.290122
EM: Round [102] log likelihood: -736708.286518
EM: Round [103] log likelihood: -736708.283003
EM: Round [104] log likelihood: -736708.279573
EM: Round [105] log likelihood: -736708.276227
EM: Round [106] log likelihood: -736708.272963
EM: Round [107] log likelihood: -736708.269779
EM: Round [108] log likelihood: -736708.266672
EM: Round [109] log likelihood: -736708.263641
EM: Round [110] log likelihood: -736708.260684
EM: Round [111] log likelihood: -736708.257798
EM: Round [112] log likelihood: -736708.254982
EM: Round [113] log likelihood: -736708.252234
EM: Round [114] log likelihood: -736708.249553
EM: Round [115] log likelihood: -736708.246937
EM: Round [116] log likelihood: -736708.244384
EM: Round [117] log likelihood: -736708.241892
EM: Round [118] log likelihood: -736708.239460
EM: Round [119] log likelihood: -736708.237087
EM: Round [120] log likelihood: -736708.234771
EM: Round [121] log likelihood: -736708.232511
EM: Round [122] log likelihood: -736708.230305
EM: Round [123] log likelihood: -736708.228151
EM: Round [124] log likelihood: -736708.226050
EM: Round [125] log likelihood: -736708.223998
EM: Round [126] log likelihood: -736708.221996
EM: Round [127] log likelihood: -736708.220041
EM: Round [128] log likelihood: -736708.218133
EM: Round [129] log likelihood: -736708.216270
EM: Round [130] log likelihood: -736708.214452
EM: Round [131] log likelihood: -736708.212677
EM: Round [132] log likelihood: -736708.210945
EM: Round [133] log likelihood: -736708.209253
EM: Round [134] log likelihood: -736708.207601
EM: Round [135] log likelihood: -736708.205989
EM: Round [136] log likelihood: -736708.204415
EM: Round [137] log likelihood: -736708.202878
EM: Round [138] log likelihood: -736708.201378
EM: Round [139] log likelihood: -736708.199913
EM: Round [140] log likelihood: -736708.198482
EM: Round [141] log likelihood: -736708.197086
EM: Round [142] log likelihood: -736708.195722
EM: Round [143] log likelihood: -736708.194390
EM: Round [144] log likelihood: -736708.193090
EM: Round [145] log likelihood: -736708.191820
EM: Round [146] log likelihood: -736708.190580
EM: Round [147] log likelihood: -736708.189369
EM: Round [148] log likelihood: -736708.188187
EM: Round [149] log likelihood: -736708.187032
EM: Round [150] log likelihood: -736708.185904
EM: Round [151] log likelihood: -736708.184803
EM: Round [152] log likelihood: -736708.183728
EM: Round [153] log likelihood: -736708.182677
EM: Round [154] log likelihood: -736708.181651
EM: Round [155] log likelihood: -736708.180650
EM: Round [156] log likelihood: -736708.179671
EM: Round [157] log likelihood: -736708.178715
EM: Round [158] log likelihood: -736708.177782
EM: Round [159] log likelihood: -736708.176870
EM: Round [160] log likelihood: -736708.175979
EM: Round [161] log likelihood: -736708.175109
EM: Round [162] log likelihood: -736708.174260
EM: Round [163] log likelihood: -736708.173430
EM: Round [164] log likelihood: -736708.172619
EM: Round [165] log likelihood: -736708.171827
EM: Round [166] log likelihood: -736708.171053
EM: Round [167] log likelihood: -736708.170297
EM: Round [168] log likelihood: -736708.169559
EM: Round [169] log likelihood: -736708.168838
EM: Round [170] log likelihood: -736708.168133
EM: Round [171] log likelihood: -736708.167445
EM: Round [172] log likelihood: -736708.166772
EM: Round [173] log likelihood: -736708.166115
EM: Round [174] log likelihood: -736708.165473
EM: Round [175] log likelihood: -736708.164846
EM: Round [176] log likelihood: -736708.164233
EM: Round [177] log likelihood: -736708.163635
EM: Round [178] log likelihood: -736708.163050
EM: Round [179] log likelihood: -736708.162478
EM: Round [180] log likelihood: -736708.161920
EM: Round [181] log likelihood: -736708.161374
EM: Round [182] log likelihood: -736708.160841
EM: Round [183] log likelihood: -736708.160320
EM: Round [184] log likelihood: -736708.159811
EM: Round [185] log likelihood: -736708.159314
EM: Round [186] log likelihood: -736708.158827
EM: Round [187] log likelihood: -736708.158352
EM: Round [188] log likelihood: -736708.157888
EM: Round [189] log likelihood: -736708.157435
EM: Round [190] log likelihood: -736708.156991
EM: Round [191] log likelihood: -736708.156558
EM: Round [192] log likelihood: -736708.156135
EM: Round [193] log likelihood: -736708.155721
EM: Round [194] log likelihood: -736708.155317
EM: Round [195] log likelihood: -736708.154922
EM: Round [196] log likelihood: -736708.154536
EM: Round [197] log likelihood: -736708.154158
EM: Round [198] log likelihood: -736708.153789
EM: Round [199] log likelihood: -736708.153429
EM: Round [200] log likelihood: -736708.153076
EM: Round [201] log likelihood: -736708.152732
EM: Round [202] log likelihood: -736708.152395
EM: Round [203] log likelihood: -736708.152066
EM: Round [204] log likelihood: -736708.151745
EM: Round [205] log likelihood: -736708.151430
EM: Round [206] log likelihood: -736708.151123
EM: Round [207] log likelihood: -736708.150823
EM: Round [208] log likelihood: -736708.150529
EM: Round [209] log likelihood: -736708.150242
EM: Round [210] log likelihood: -736708.149962
EM: Round [211] log likelihood: -736708.149687
EM: Round [212] log likelihood: -736708.149419
EM: Round [213] log likelihood: -736708.149157
EM: Round [214] log likelihood: -736708.148901
EM: Round [215] log likelihood: -736708.148650
EM: Round [216] log likelihood: -736708.148406
EM: Round [217] log likelihood: -736708.148166
EM: Round [218] log likelihood: -736708.147932
EM: Round [219] log likelihood: -736708.147703
EM: Round [220] log likelihood: -736708.147480
EM: Round [221] log likelihood: -736708.147261
EM: Round [222] log likelihood: -736708.147047
EM: Round [223] log likelihood: -736708.146838
EM: Round [224] log likelihood: -736708.146634
EM: Round [225] log likelihood: -736708.146434
EM: Round [226] log likelihood: -736708.146239
EM: Round [227] log likelihood: -736708.146048
EM: Round [228] log likelihood: -736708.145861
EM: Round [229] log likelihood: -736708.145678
EM: Round [230] log likelihood: -736708.145500
EM: Round [231] log likelihood: -736708.145325
EM: Round [232] log likelihood: -736708.145154
EM: Round [233] log likelihood: -736708.144987
EM: Round [234] log likelihood: -736708.144824
EM: Round [235] log likelihood: -736708.144665
EM: Round [236] log likelihood: -736708.144508
EM: Round [237] log likelihood: -736708.144356
EM: Round [238] log likelihood: -736708.144206
EM: Round [239] log likelihood: -736708.144061
EM: Round [240] log likelihood: -736708.143918
EM: Round [241] log likelihood: -736708.143778
EM: Round [242] log likelihood: -736708.143642
EM: Round [243] log likelihood: -736708.143508
EM: Round [244] log likelihood: -736708.143378
EM: Round [245] log likelihood: -736708.143250
EM: Round [246] log likelihood: -736708.143125
EM: Round [247] log likelihood: -736708.143003
EM: Round [248] log likelihood: -736708.142883
EM: Round [249] log likelihood: -736708.142766
EM: Round [250] log likelihood: -736708.142652
EM: Round [251] log likelihood: -736708.142540
EM: Round [252] log likelihood: -736708.142431
EM: Round [253] log likelihood: -736708.142324
EM: Round [254] log likelihood: -736708.142220
EM: Round [255] log likelihood: -736708.142117
EM: Round [256] log likelihood: -736708.142017
EM: Round [257] log likelihood: -736708.141919
EM: Stopping iterations at round 257 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.vSoyjyEqMw/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.vSoyjyEqMw/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.vSoyjyEqMw/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 282756743 > /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.vSoyjyEqMw/ctat_genome_lib_build_dir > /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.vSoyjyEqMw/ctat_genome_lib_build_dir --annotate /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.vSoyjyEqMw/ctat_genome_lib_build_dir
-done, see /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.vSoyjyEqMw/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 2017, filtered: 11405)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.vSoyjyEqMw/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.vSoyjyEqMw/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [ENSG00000239268.3]
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WARNING, no entry stored in dbm for [ENSG00000283057.1]
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WARNING, no entry stored in dbm for [ENSG00000237037.9]
WARNING, no entry stored in dbm for [ENSG00000280273.2]
WARNING, no entry stored in dbm for [ENSG00000163597.15]
WARNING, no entry stored in dbm for [ENSG00000228224.3]
WARNING, no entry stored in dbm for [ENSG00000271811.1]
WARNING, no entry stored in dbm for [ENSG00000218426.5]
WARNING, no entry stored in dbm for [ENSG00000236051.7]
WARNING, no entry stored in dbm for [ENSG00000197376.3]
WARNING, no entry stored in dbm for [ENSG00000246596.7]
WARNING, no entry stored in dbm for [ENSG00000214955.5]
WARNING, no entry stored in dbm for [ENSG00000288663.1]
WARNING, no entry stored in dbm for [ENSG00000237390.1]
WARNING, no entry stored in dbm for [ENSG00000283805.1]
WARNING, no entry stored in dbm for [ENSG00000207642.1]
WARNING, no entry stored in dbm for [ENSG00000228375.1]
WARNING, no entry stored in dbm for [ENSG00000267280.5]
WARNING, no entry stored in dbm for [ENSG00000267207.1]
WARNING, no entry stored in dbm for [ENSG00000262990.1]
WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000280402.1]
WARNING, no entry stored in dbm for [ENSG00000272906.1]
WARNING, no entry stored in dbm for [ENSG00000228063.2]
WARNING, no entry stored in dbm for [ENSG00000219201.4]
WARNING, no entry stored in dbm for [ENSG00000240429.1]
WARNING, no entry stored in dbm for [ENSG00000240429.1]
WARNING, no entry stored in dbm for [ENSG00000237588.2]
WARNING, no entry stored in dbm for [ENSG00000100068.14]
WARNING, no entry stored in dbm for [ENSG00000264359.1]
WARNING, no entry stored in dbm for [ENSG00000241288.8]
WARNING, no entry stored in dbm for [ENSG00000231566.2]
WARNING, no entry stored in dbm for [ENSG00000257259.3]
WARNING, no entry stored in dbm for [ENSG00000261064.1]
WARNING, no entry stored in dbm for [ENSG00000234634.2]
WARNING, no entry stored in dbm for [ENSG00000239440.6]
WARNING, no entry stored in dbm for [ENSG00000231327.1]
WARNING, no entry stored in dbm for [ENSG00000234928.1]
WARNING, no entry stored in dbm for [ENSG00000227755.1]
WARNING, no entry stored in dbm for [ENSG00000261340.1]
WARNING, no entry stored in dbm for [ENSG00000205611.5]
WARNING, no entry stored in dbm for [ENSG00000237877.7]
WARNING, no entry stored in dbm for [ENSG00000244128.7]
WARNING, no entry stored in dbm for [ENSG00000249550.7]
WARNING, no entry stored in dbm for [ENSG00000228794.10]
WARNING, no entry stored in dbm for [ENSG00000228794.10]
WARNING, no entry stored in dbm for [ENSG00000249353.2]
WARNING, no entry stored in dbm for [ENSG00000228794.10]
WARNING, no entry stored in dbm for [ENSG00000213753.11]
WARNING, no entry stored in dbm for [ENSG00000188825.14]
WARNING, no entry stored in dbm for [ENSG00000235703.6]
WARNING, no entry stored in dbm for [ENSG00000241769.7]
WARNING, no entry stored in dbm for [ENSG00000242759.8]
WARNING, no entry stored in dbm for [ENSG00000225269.3]
WARNING, no entry stored in dbm for [ENSG00000232677.9]
WARNING, no entry stored in dbm for [ENSG00000230417.12]
WARNING, no entry stored in dbm for [ENSG00000231535.7]
WARNING, no entry stored in dbm for [ENSG00000188185.13]
WARNING, no entry stored in dbm for [ENSG00000165121.11]
WARNING, no entry stored in dbm for [ENSG00000223612.3]
WARNING, no entry stored in dbm for [ENSG00000248736.3]
WARNING, no entry stored in dbm for [ENSG00000229485.1]
WARNING, no entry stored in dbm for [ENSG00000227082.3]
WARNING, no entry stored in dbm for [ENSG00000214514.8]
WARNING, no entry stored in dbm for [ENSG00000214514.8]
WARNING, no entry stored in dbm for [ENSG00000279261.2]
WARNING, no entry stored in dbm for [ENSG00000277146.1]
WARNING, no entry stored in dbm for [ENSG00000261045.2]
WARNING, no entry stored in dbm for [ENSG00000236021.2]
WARNING, no entry stored in dbm for [ENSG00000228384.4]
WARNING, no entry stored in dbm for [ENSG00000237978.6]
WARNING, no entry stored in dbm for [ENSG00000225470.8]
WARNING, no entry stored in dbm for [ENSG00000260776.6]
WARNING, no entry stored in dbm for [ENSG00000235257.9]
WARNING, no entry stored in dbm for [ENSG00000254034.2]
WARNING, no entry stored in dbm for [ENSG00000254034.2]
WARNING, no entry stored in dbm for [ENSG00000286848.1]
WARNING, no entry stored in dbm for [ENSG00000253860.1]
WARNING, no entry stored in dbm for [ENSG00000276805.2]
WARNING, no entry stored in dbm for [ENSG00000253774.1]
WARNING, no entry stored in dbm for [ENSG00000229992.1]
WARNING, no entry stored in dbm for [ENSG00000230079.1]
WARNING, no entry stored in dbm for [ENSG00000251313.1]
WARNING, no entry stored in dbm for [ENSG00000214922.9]
WARNING, no entry stored in dbm for [ENSG00000262879.6]
WARNING, no entry stored in dbm for [ENSG00000198618.5]
WARNING, no entry stored in dbm for [ENSG00000276550.4]
WARNING, no entry stored in dbm for [ENSG00000285763.1]
WARNING, no entry stored in dbm for [ENSG00000180438.15]
WARNING, no entry stored in dbm for [ENSG00000236197.4]
WARNING, no entry stored in dbm for [ENSG00000188662.6]
WARNING, no entry stored in dbm for [ENSG00000234945.8]
WARNING, no entry stored in dbm for [ENSG00000261534.1]
WARNING, no entry stored in dbm for [ENSG00000235038.1]
WARNING, no entry stored in dbm for [ENSG00000214433.4]
WARNING, no entry stored in dbm for [ENSG00000234520.6]
WARNING, no entry stored in dbm for [ENSG00000240288.8]
WARNING, no entry stored in dbm for [ENSG00000254349.6]
WARNING, no entry stored in dbm for [ENSG00000196295.12]
WARNING, no entry stored in dbm for [ENSG00000196295.12]
WARNING, no entry stored in dbm for [ENSG00000196295.12]
WARNING, no entry stored in dbm for [ENSG00000272954.1]
WARNING, no entry stored in dbm for [ENSG00000250328.6]
WARNING, no entry stored in dbm for [ENSG00000285410.1]
WARNING, no entry stored in dbm for [ENSG00000230590.11]
WARNING, no entry stored in dbm for [ENSG00000236991.6]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000273747.1]
WARNING, no entry stored in dbm for [ENSG00000237938.5]
WARNING, no entry stored in dbm for [ENSG00000232900.2]
WARNING, no entry stored in dbm for [ENSG00000229321.2]
WARNING, no entry stored in dbm for [ENSG00000255052.5]
WARNING, no entry stored in dbm for [ENSG00000254016.3]
WARNING, no entry stored in dbm for [ENSG00000255052.5]
WARNING, no entry stored in dbm for [ENSG00000254016.3]
WARNING, no entry stored in dbm for [ENSG00000244383.2]
WARNING, no entry stored in dbm for [ENSG00000231527.7]
WARNING, no entry stored in dbm for [ENSG00000254482.1]
WARNING, no entry stored in dbm for [ENSG00000204677.13]
WARNING, no entry stored in dbm for [ENSG00000246596.7]
WARNING, no entry stored in dbm for [ENSG00000196204.12]
WARNING, no entry stored in dbm for [ENSG00000279459.1]
WARNING, no entry stored in dbm for [ENSG00000234750.1]
WARNING, no entry stored in dbm for [ENSG00000185684.15]
WARNING, no entry stored in dbm for [ENSG00000185684.15]
WARNING, no entry stored in dbm for [ENSG00000226688.7]
WARNING, no entry stored in dbm for [ENSG00000179523.5]
WARNING, no entry stored in dbm for [ENSG00000233912.1]
WARNING, no entry stored in dbm for [ENSG00000205485.13]
WARNING, no entry stored in dbm for [ENSG00000228887.3]
WARNING, no entry stored in dbm for [ENSG00000229280.1]
WARNING, no entry stored in dbm for [ENSG00000176593.8]
WARNING, no entry stored in dbm for [ENSG00000176593.8]
WARNING, no entry stored in dbm for [ENSG00000234840.2]
WARNING, no entry stored in dbm for [ENSG00000260261.2]
WARNING, no entry stored in dbm for [ENSG00000176124.15]
WARNING, no entry stored in dbm for [ENSG00000266677.1]
WARNING, no entry stored in dbm for [ENSG00000261645.7]
WARNING, no entry stored in dbm for [ENSG00000254275.6]
WARNING, no entry stored in dbm for [ENSG00000278428.1]
WARNING, no entry stored in dbm for [ENSG00000218227.3]
WARNING, no entry stored in dbm for [ENSG00000222041.11]
WARNING, no entry stored in dbm for [ENSG00000287063.1]
WARNING, no entry stored in dbm for [ENSG00000187893.10]
WARNING, no entry stored in dbm for [ENSG00000278903.3]
WARNING, no entry stored in dbm for [ENSG00000269001.2]
WARNING, no entry stored in dbm for [ENSG00000276710.4]
WARNING, no entry stored in dbm for [ENSG00000080947.15]
WARNING, no entry stored in dbm for [ENSG00000270533.2]
WARNING, no entry stored in dbm for [ENSG00000213904.9]
WARNING, no entry stored in dbm for [ENSG00000230630.5]
WARNING, no entry stored in dbm for [ENSG00000237352.4]
WARNING, no entry stored in dbm for [ENSG00000228358.6]
WARNING, no entry stored in dbm for [ENSG00000285051.2]
WARNING, no entry stored in dbm for [ENSG00000248932.6]
WARNING, no entry stored in dbm for [ENSG00000228318.3]
WARNING, no entry stored in dbm for [ENSG00000286402.1]
WARNING, no entry stored in dbm for [ENSG00000278156.2]
WARNING, no entry stored in dbm for [ENSG00000263325.1]
WARNING, no entry stored in dbm for [ENSG00000277449.1]
WARNING, no entry stored in dbm for [ENSG00000274044.5]
WARNING, no entry stored in dbm for [ENSG00000247925.2]
WARNING, no entry stored in dbm for [ENSG00000226332.2]
WARNING, no entry stored in dbm for [ENSG00000215039.7]
WARNING, no entry stored in dbm for [ENSG00000224660.2]
WARNING, no entry stored in dbm for [ENSG00000245750.10]
WARNING, no entry stored in dbm for [ENSG00000223745.8]
WARNING, no entry stored in dbm for [ENSG00000277741.4]
WARNING, no entry stored in dbm for [ENSG00000236830.7]
WARNING, no entry stored in dbm for [ENSG00000236830.7]
WARNING, no entry stored in dbm for [ENSG00000245888.7]
WARNING, no entry stored in dbm for [ENSG00000257859.2]
WARNING, no entry stored in dbm for [ENSG00000262312.2]
WARNING, no entry stored in dbm for [ENSG00000285190.1]
WARNING, no entry stored in dbm for [ENSG00000288596.2]
WARNING, no entry stored in dbm for [ENSG00000235421.1]
WARNING, no entry stored in dbm for [ENSG00000188511.12]
WARNING, no entry stored in dbm for [ENSG00000231424.3]
WARNING, no entry stored in dbm for [ENSG00000225169.1]
WARNING, no entry stored in dbm for [ENSG00000180846.8]
WARNING, no entry stored in dbm for [ENSG00000224228.2]
WARNING, no entry stored in dbm for [ENSG00000240089.2]
WARNING, no entry stored in dbm for [ENSG00000237238.3]
WARNING, no entry stored in dbm for [ENSG00000204177.10]
WARNING, no entry stored in dbm for [ENSG00000179362.14]
WARNING, no entry stored in dbm for [ENSG00000224809.2]
WARNING, no entry stored in dbm for [ENSG00000226332.2]
WARNING, no entry stored in dbm for [ENSG00000279022.1]
WARNING, no entry stored in dbm for [ENSG00000258704.6]
WARNING, no entry stored in dbm for [ENSG00000233006.8]
WARNING, no entry stored in dbm for [ENSG00000230140.7]
WARNING, no entry stored in dbm for [ENSG00000241684.6]
WARNING, no entry stored in dbm for [ENSG00000213435.3]
WARNING, no entry stored in dbm for [ENSG00000256280.1]
WARNING, no entry stored in dbm for [ENSG00000241728.5]
WARNING, no entry stored in dbm for [ENSG00000250922.1]
WARNING, no entry stored in dbm for [ENSG00000203865.11]
WARNING, no entry stored in dbm for [ENSG00000244104.3]
WARNING, no entry stored in dbm for [ENSG00000203865.11]
WARNING, no entry stored in dbm for [ENSG00000243103.3]
WARNING, no entry stored in dbm for [ENSG00000203865.11]
WARNING, no entry stored in dbm for [ENSG00000277483.1]
WARNING, no entry stored in dbm for [ENSG00000271730.1]
WARNING, no entry stored in dbm for [ENSG00000235919.4]
WARNING, no entry stored in dbm for [ENSG00000235919.4]
WARNING, no entry stored in dbm for [ENSG00000271147.8]
WARNING, no entry stored in dbm for [ENSG00000275374.1]
WARNING, no entry stored in dbm for [ENSG00000256007.1]
WARNING, no entry stored in dbm for [ENSG00000224880.1]
WARNING, no entry stored in dbm for [ENSG00000254765.1]
WARNING, no entry stored in dbm for [ENSG00000266522.1]
WARNING, no entry stored in dbm for [ENSG00000254987.1]
WARNING, no entry stored in dbm for [ENSG00000250519.7]
WARNING, no entry stored in dbm for [ENSG00000285693.1]
WARNING, no entry stored in dbm for [ENSG00000254873.1]
WARNING, no entry stored in dbm for [ENSG00000236304.1]
WARNING, no entry stored in dbm for [ENSG00000254452.1]
WARNING, no entry stored in dbm for [ENSG00000272733.1]
WARNING, no entry stored in dbm for [ENSG00000244301.6]
WARNING, no entry stored in dbm for [ENSG00000250334.6]
WARNING, no entry stored in dbm for [ENSG00000235085.3]
WARNING, no entry stored in dbm for [ENSG00000270094.1]
WARNING, no entry stored in dbm for [ENSG00000240963.1]
WARNING, no entry stored in dbm for [ENSG00000219133.2]
WARNING, no entry stored in dbm for [ENSG00000276397.2]
WARNING, no entry stored in dbm for [ENSG00000255585.3]
WARNING, no entry stored in dbm for [ENSG00000226332.2]
WARNING, no entry stored in dbm for [ENSG00000276997.4]
WARNING, no entry stored in dbm for [ENSG00000228302.2]
WARNING, no entry stored in dbm for [ENSG00000286364.1]
WARNING, no entry stored in dbm for [ENSG00000271380.1]
WARNING, no entry stored in dbm for [ENSG00000275649.1]
WARNING, no entry stored in dbm for [ENSG00000285803.1]
WARNING, no entry stored in dbm for [ENSG00000287811.1]
WARNING, no entry stored in dbm for [ENSG00000287887.1]
WARNING, no entry stored in dbm for [ENSG00000279459.1]
WARNING, no entry stored in dbm for [ENSG00000227619.3]
WARNING, no entry stored in dbm for [ENSG00000250090.1]
WARNING, no entry stored in dbm for [ENSG00000228685.1]
WARNING, no entry stored in dbm for [ENSG00000234851.4]
WARNING, no entry stored in dbm for [ENSG00000282772.1]
WARNING, no entry stored in dbm for [ENSG00000282772.1]
WARNING, no entry stored in dbm for [ENSG00000286340.1]
WARNING, no entry stored in dbm for [ENSG00000203620.2]
WARNING, no entry stored in dbm for [ENSG00000275741.1]
WARNING, no entry stored in dbm for [ENSG00000286162.2]
WARNING, no entry stored in dbm for [ENSG00000288583.1]
WARNING, no entry stored in dbm for [ENSG00000287368.1]
WARNING, no entry stored in dbm for [ENSG00000231863.2]
WARNING, no entry stored in dbm for [ENSG00000232098.3]
WARNING, no entry stored in dbm for [ENSG00000258851.1]
WARNING, no entry stored in dbm for [ENSG00000227537.1]
WARNING, no entry stored in dbm for [ENSG00000238165.1]
WARNING, no entry stored in dbm for [ENSG00000228436.3]
WARNING, no entry stored in dbm for [ENSG00000237596.7]
WARNING, no entry stored in dbm for [ENSG00000254669.1]
WARNING, no entry stored in dbm for [ENSG00000235122.4]
WARNING, no entry stored in dbm for [ENSG00000259515.1]
WARNING, no entry stored in dbm for [ENSG00000259515.1]
WARNING, no entry stored in dbm for [ENSG00000227836.1]
WARNING, no entry stored in dbm for [ENSG00000287817.1]
WARNING, no entry stored in dbm for [ENSG00000227486.2]
WARNING, no entry stored in dbm for [ENSG00000259138.1]
WARNING, no entry stored in dbm for [ENSG00000288543.1]
WARNING, no entry stored in dbm for [ENSG00000229766.7]
WARNING, no entry stored in dbm for [ENSG00000232599.1]
WARNING, no entry stored in dbm for [ENSG00000225689.2]
WARNING, no entry stored in dbm for [ENSG00000261273.1]
WARNING, no entry stored in dbm for [ENSG00000213107.2]
WARNING, no entry stored in dbm for [ENSG00000241570.8]
WARNING, no entry stored in dbm for [ENSG00000169668.11]
WARNING, no entry stored in dbm for [ENSG00000254332.1]
WARNING, no entry stored in dbm for [ENSG00000272734.1]
WARNING, no entry stored in dbm for [ENSG00000221639.1]
WARNING, no entry stored in dbm for [ENSG00000257307.1]
WARNING, no entry stored in dbm for [ENSG00000232000.3]
WARNING, no entry stored in dbm for [ENSG00000224505.2]
WARNING, no entry stored in dbm for [ENSG00000269982.1]
WARNING, no entry stored in dbm for [ENSG00000237017.1]
WARNING, no entry stored in dbm for [ENSG00000274642.1]
WARNING, no entry stored in dbm for [ENSG00000223804.5]
WARNING, no entry stored in dbm for [ENSG00000223804.5]
WARNING, no entry stored in dbm for [ENSG00000223779.6]
WARNING, no entry stored in dbm for [ENSG00000238039.1]
WARNING, no entry stored in dbm for [ENSG00000284964.1]
WARNING, no entry stored in dbm for [ENSG00000274423.1]
WARNING, no entry stored in dbm for [ENSG00000284964.1]
WARNING, no entry stored in dbm for [ENSG00000285599.1]
WARNING, no entry stored in dbm for [ENSG00000228794.10]
WARNING, no entry stored in dbm for [ENSG00000280254.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000214243.3]
WARNING, no entry stored in dbm for [ENSG00000246596.7]
WARNING, no entry stored in dbm for [ENSG00000246596.7]
WARNING, no entry stored in dbm for [ENSG00000286045.1]
WARNING, no entry stored in dbm for [ENSG00000251623.2]
WARNING, no entry stored in dbm for [ENSG00000254701.3]
WARNING, no entry stored in dbm for [ENSG00000234353.2]
WARNING, no entry stored in dbm for [ENSG00000215158.9]
WARNING, no entry stored in dbm for [ENSG00000224888.4]
WARNING, no entry stored in dbm for [ENSG00000278212.2]
WARNING, no entry stored in dbm for [ENSG00000258232.2]
WARNING, no entry stored in dbm for [ENSG00000268081.1]
WARNING, no entry stored in dbm for [ENSG00000250057.1]
WARNING, no entry stored in dbm for [ENSG00000272211.1]
WARNING, no entry stored in dbm for [ENSG00000249444.2]
WARNING, no entry stored in dbm for [ENSG00000279658.1]
WARNING, no entry stored in dbm for [ENSG00000284610.1]
WARNING, no entry stored in dbm for [ENSG00000244281.1]
WARNING, no entry stored in dbm for [ENSG00000251600.8]
WARNING, no entry stored in dbm for [ENSG00000250144.1]
WARNING, no entry stored in dbm for [ENSG00000254231.3]
WARNING, no entry stored in dbm for [ENSG00000259635.1]
WARNING, no entry stored in dbm for [ENSG00000282375.1]
WARNING, no entry stored in dbm for [ENSG00000224738.1]
WARNING, no entry stored in dbm for [ENSG00000287676.1]
WARNING, no entry stored in dbm for [ENSG00000249392.1]
WARNING, no entry stored in dbm for [ENSG00000280219.1]
WARNING, no entry stored in dbm for [ENSG00000244021.4]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000225209.2]
WARNING, no entry stored in dbm for [ENSG00000278577.1]
WARNING, no entry stored in dbm for [ENSG00000268362.6]
WARNING, no entry stored in dbm for [ENSG00000230733.2]
WARNING, no entry stored in dbm for [ENSG00000262136.1]
WARNING, no entry stored in dbm for [ENSG00000267458.1]
WARNING, no entry stored in dbm for [ENSG00000284128.1]
WARNING, no entry stored in dbm for [ENSG00000253123.4]
WARNING, no entry stored in dbm for [ENSG00000259418.1]
WARNING, no entry stored in dbm for [ENSG00000285035.1]
WARNING, no entry stored in dbm for [ENSG00000265936.1]
WARNING, no entry stored in dbm for [ENSG00000214259.3]
WARNING, no entry stored in dbm for [ENSG00000259363.6]
WARNING, no entry stored in dbm for [ENSG00000259363.6]
WARNING, no entry stored in dbm for [ENSG00000264151.6]
WARNING, no entry stored in dbm for [ENSG00000264151.6]
WARNING, no entry stored in dbm for [ENSG00000244953.1]
WARNING, no entry stored in dbm for [ENSG00000284655.1]
WARNING, no entry stored in dbm for [ENSG00000256589.2]
WARNING, no entry stored in dbm for [ENSG00000204745.4]
WARNING, no entry stored in dbm for [ENSG00000266931.2]
WARNING, no entry stored in dbm for [ENSG00000272944.1]
WARNING, no entry stored in dbm for [ENSG00000250131.2]
WARNING, no entry stored in dbm for [ENSG00000259605.3]
WARNING, no entry stored in dbm for [ENSG00000234129.8]
WARNING, no entry stored in dbm for [ENSG00000217702.3]
WARNING, no entry stored in dbm for [ENSG00000239985.2]
WARNING, no entry stored in dbm for [ENSG00000229370.1]
WARNING, no entry stored in dbm for [ENSG00000284613.1]
WARNING, no entry stored in dbm for [ENSG00000283674.3]
WARNING, no entry stored in dbm for [ENSG00000283674.3]
WARNING, no entry stored in dbm for [ENSG00000284605.1]
WARNING, no entry stored in dbm for [ENSG00000283674.3]
WARNING, no entry stored in dbm for [ENSG00000288075.1]
WARNING, no entry stored in dbm for [ENSG00000259543.1]
WARNING, no entry stored in dbm for [ENSG00000267002.4]
WARNING, no entry stored in dbm for [ENSG00000254398.1]
WARNING, no entry stored in dbm for [ENSG00000198658.4]
WARNING, no entry stored in dbm for [ENSG00000254519.5]
WARNING, no entry stored in dbm for [ENSG00000254951.7]
WARNING, no entry stored in dbm for [ENSG00000253200.1]
WARNING, no entry stored in dbm for [ENSG00000237493.3]
WARNING, no entry stored in dbm for [ENSG00000260894.1]
WARNING, no entry stored in dbm for [ENSG00000260784.1]
WARNING, no entry stored in dbm for [ENSG00000260784.1]
WARNING, no entry stored in dbm for [ENSG00000249026.2]
WARNING, no entry stored in dbm for [ENSG00000224163.4]
WARNING, no entry stored in dbm for [ENSG00000285848.1]
WARNING, no entry stored in dbm for [ENSG00000257342.1]
WARNING, no entry stored in dbm for [ENSG00000245904.4]
WARNING, no entry stored in dbm for [ENSG00000279970.1]
WARNING, no entry stored in dbm for [ENSG00000267601.1]
WARNING, no entry stored in dbm for [ENSG00000256802.2]
WARNING, no entry stored in dbm for [ENSG00000268093.1]
WARNING, no entry stored in dbm for [ENSG00000269349.1]
WARNING, no entry stored in dbm for [ENSG00000248898.3]
WARNING, no entry stored in dbm for [ENSG00000243818.5]
WARNING, no entry stored in dbm for [ENSG00000234584.1]
WARNING, no entry stored in dbm for [ENSG00000188002.10]
WARNING, no entry stored in dbm for [ENSG00000285106.2]
WARNING, no entry stored in dbm for [ENSG00000287306.1]
WARNING, no entry stored in dbm for [ENSG00000269032.1]
WARNING, no entry stored in dbm for [ENSG00000184319.16]
WARNING, no entry stored in dbm for [ENSG00000267605.7]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000249406.3]
WARNING, no entry stored in dbm for [ENSG00000249406.3]
WARNING, no entry stored in dbm for [ENSG00000249406.3]
WARNING, no entry stored in dbm for [ENSG00000249406.3]
WARNING, no entry stored in dbm for [ENSG00000249406.3]
WARNING, no entry stored in dbm for [ENSG00000249406.3]
WARNING, no entry stored in dbm for [ENSG00000249406.3]
WARNING, no entry stored in dbm for [ENSG00000249406.3]
WARNING, no entry stored in dbm for [ENSG00000232386.9]
WARNING, no entry stored in dbm for [ENSG00000287543.1]
WARNING, no entry stored in dbm for [ENSG00000278897.1]
WARNING, no entry stored in dbm for [ENSG00000261526.2]
WARNING, no entry stored in dbm for [ENSG00000236478.2]
WARNING, no entry stored in dbm for [ENSG00000203327.2]
WARNING, no entry stored in dbm for [ENSG00000287688.1]
WARNING, no entry stored in dbm for [ENSG00000270087.5]
WARNING, no entry stored in dbm for [ENSG00000237149.5]
WARNING, no entry stored in dbm for [ENSG00000237798.1]
WARNING, no entry stored in dbm for [ENSG00000268119.6]
WARNING, no entry stored in dbm for [ENSG00000267220.1]
WARNING, no entry stored in dbm for [ENSG00000283695.1]
WARNING, no entry stored in dbm for [ENSG00000269867.1]
WARNING, no entry stored in dbm for [ENSG00000250608.2]
WARNING, no entry stored in dbm for [ENSG00000257696.1]
WARNING, no entry stored in dbm for [ENSG00000270277.1]
WARNING, no entry stored in dbm for [ENSG00000258056.2]
WARNING, no entry stored in dbm for [ENSG00000230355.1]
WARNING, no entry stored in dbm for [ENSG00000261829.1]
WARNING, no entry stored in dbm for [ENSG00000284649.1]
WARNING, no entry stored in dbm for [ENSG00000269371.1]
WARNING, no entry stored in dbm for [ENSG00000279529.1]
WARNING, no entry stored in dbm for [ENSG00000268112.1]
WARNING, no entry stored in dbm for [ENSG00000286974.1]
WARNING, no entry stored in dbm for [ENSG00000267523.1]
WARNING, no entry stored in dbm for [ENSG00000227444.1]
WARNING, no entry stored in dbm for [ENSG00000284959.2]
WARNING, no entry stored in dbm for [ENSG00000284052.1]
WARNING, no entry stored in dbm for [ENSG00000236531.2]
WARNING, no entry stored in dbm for [ENSG00000267449.1]
WARNING, no entry stored in dbm for [ENSG00000263159.1]
WARNING, no entry stored in dbm for [ENSG00000268205.1]
WARNING, no entry stored in dbm for [ENSG00000205485.13]
WARNING, no entry stored in dbm for [ENSG00000254610.3]
WARNING, no entry stored in dbm for [ENSG00000287860.1]
WARNING, no entry stored in dbm for [ENSG00000287519.1]
WARNING, no entry stored in dbm for [ENSG00000273419.1]
WARNING, no entry stored in dbm for [ENSG00000286333.1]
WARNING, no entry stored in dbm for [ENSG00000277469.1]
WARNING, no entry stored in dbm for [ENSG00000285486.1]
WARNING, no entry stored in dbm for [ENSG00000230941.1]
WARNING, no entry stored in dbm for [ENSG00000259242.2]


	* STAR-Fusion complete.  See output: /tmp/nxf.vSoyjyEqMw/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)