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Filename
.command.sh
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/7785cbd75f66d817c5ecaae49c3c24/.command.sh
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417 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:EXTRACT_VAF_FEATURES (1173_9C_T1_RNA_SLD_01_A23T55JLT4_1)
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#!/bin/bash -euo pipefail
# Extract VAF features from VCF
extract_vaf_features.py \
    "1173_9C_T1_RNA_SLD_01_A23T55JLT4_1.vcf" \
    --output "1173_9C_T1_RNA_SLD_01_A23T55JLT4_1.features.csv"

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:EXTRACT_VAF_FEATURES":
    python: $(python3 --version | sed 's/Python //g')
    extract_vaf_features: 1.0.0
END_VERSIONS