File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/5ff8fc6dc6eb79650bff04b67a0e4e/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:11:43
                             Started mapping on |	Jun 08 10:18:26
                                    Finished on |	Jun 08 11:10:28
       Mapping speed, Million of reads per hour |	266.34

                          Number of input reads |	230973703
                      Average input read length |	220
                                    UNIQUE READS:
                   Uniquely mapped reads number |	213120472
                        Uniquely mapped reads % |	92.27%
                          Average mapped length |	219.47
                       Number of splices: Total |	166623504
            Number of splices: Annotated (sjdb) |	164081247
                       Number of splices: GT/AG |	164535776
                       Number of splices: GC/AG |	1179084
                       Number of splices: AT/AC |	119979
               Number of splices: Non-canonical |	788665
                      Mismatch rate per base, % |	0.45%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.06
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.59
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	14103200
             % of reads mapped to multiple loci |	6.11%
        Number of reads mapped to too many loci |	534714
             % of reads mapped to too many loci |	0.23%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2844492
                 % of reads unmapped: too short |	1.23%
                Number of reads unmapped: other |	370825
                     % of reads unmapped: other |	0.16%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%