.command.sh - Workdir - NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:BCLCONVERT (20260408_LH00995_0025_A23T55JLT4;L004)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/e06c7c25604ad8de81ddf7c9b8f3e7/.command.sh
Size: 359 bytes
Task: NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:BCLCONVERT (20260408_LH00995_0025_A23T55JLT4;L004)
Attempt

Content

#!/bin/bash -euo pipefail
bcl-convert \
     \
    --tiles s_4 \
    --output-directory output \
    --bcl-input-directory rundir \
    --sample-sheet rundir/SampleSheet.csv

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:BCLCONVERT":
    bclconvert: $(bcl-convert -V 2>&1 | head -n 1 | sed 's/^.*Version //')
END_VERSIONS