Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/ca4d20e41802bc8c33ea65523f74cb/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/e13e442120f428ab92743ab2ae5db3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/bfe1b1eae8d92a160221a72fd9d493/1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/e13e442120f428ab92743ab2ae5db3/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/8f22cd1f1613e6c0849815dca5d60b/1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 240768101
[W::hts_idx_load3] The index file is older than the data file: 1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	240768101
Known Splicing Events:	239056605
Partial Novel Splicing Events:	1046840
Novel Splicing Events:	611315
Filtered Splicing Events:	53341

Total splicing  Junctions:	375224
Known Splicing Junctions:	242568
Partial Novel Splicing Junctions:	86744
Novel Splicing Junctions:	45912

===================================================================
Create BED file ...
Create Interact file ...