Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/383c2fd697970f35d6c641e8f405eb/1173_RPC_T1_RNA_SLD_01_A23T55JLT4_2_1.fastp.fastq.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/9efc1c2a2e9e9d1b4fe0261dc5f0e3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/837e3355a88ecec1e2da865cf5cd11/1173_RPC_T1_RNA_SLD_01_A23T55JLT4_2.Chimeric.out.junction
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/9efc1c2a2e9e9d1b4fe0261dc5f0e3/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/383c2fd697970f35d6c641e8f405eb/1173_RPC_T1_RNA_SLD_01_A23T55JLT4_2_2.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)

-ctat genome lib [/tmp/nxf.I3lIs64fuX/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.I3lIs64fuX/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary
-sample contains 279832462 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.I3lIs64fuX/ctat_genome_lib_build_dir  -J /tmp/nxf.I3lIs64fuX/1173_RPC_T1_RNA_SLD_01_A23T55JLT4_2.Chimeric.out.junction  -O /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.I3lIs64fuX/1173_RPC_T1_RNA_SLD_01_A23T55JLT4_2.Chimeric.out.junction
-building interval tree based on /tmp/nxf.I3lIs64fuX/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

[10000], rate=75000.00/min 
[20000], rate=52173.91/min 
[30000], rate=58064.52/min 
[40000], rate=63157.89/min 
[50000], rate=52631.58/min 
[60000], rate=48000.00/min 
[70000], rate=44210.53/min 
[80000], rate=42105.26/min 
[90000], rate=40000.00/min 
[100000], rate=39215.69/min 
[110000], rate=38823.53/min 
[120000], rate=38297.87/min 
[130000], rate=37864.08/min 
[140000], rate=37500.00/min 
[150000], rate=37344.40/min 
[160000], rate=37209.30/min 
[170000], rate=37090.91/min 
[180000], rate=36986.30/min 
[190000], rate=36893.20/min 
[200000], rate=36809.82/min 
[210000], rate=36842.11/min 
[220000], rate=36666.67/min 
[230000], rate=36702.13/min 
[240000], rate=36641.22/min 
[250000], rate=36764.71/min 
[260000], rate=36705.88/min 
[270000], rate=36818.18/min 
[280000], rate=36842.11/min 
[290000], rate=36942.68/min 
[300000], rate=37037.04/min 
[310000], rate=36978.13/min 
[320000], rate=36994.22/min 
[330000], rate=36871.51/min 
[340000], rate=36624.78/min 
[350000], rate=36332.18/min 
[360000], rate=36424.96/min 
[370000], rate=36633.66/min 
[380000], rate=36833.60/min 
[390000], rate=36850.39/min 
[400000], rate=37094.28/min 
[410000], rate=37272.73/min 
[420000], rate=37388.72/min 
[430000], rate=37554.59/min 
[440000], rate=37714.29/min 
[450000], rate=37868.16/min 
[460000], rate=38016.53/min 
[470000], rate=37801.61/min 
[480000], rate=37548.89/min 
[490000], rate=37309.64/min 
[500000], rate=37500.00/min 
[510000], rate=37731.20/min 
[520000], rate=37910.09/min 
[530000], rate=38175.27/min 
[540000], rate=38434.16/min 
[550000], rate=38777.91/min 
[560000], rate=39024.39/min 
[570000], rate=39220.18/min 
[580000], rate=39500.57/min 
[590000], rate=39730.64/min 
[600000], rate=40089.09/min 
[610000], rate=40308.37/min 
[620000], rate=40567.07/min 
[630000], rate=40820.73/min 
[640000], rate=41069.52/min 
[650000], rate=41357.37/min 
[660000], rate=41465.97/min 
[670000], rate=41744.55/min 
[680000], rate=42018.54/min 
[690000], rate=42158.86/min 
[700000], rate=42211.06/min 
[710000], rate=42514.97/min 
[720000], rate=42645.61/min 
[730000], rate=42648.49/min 
[740000], rate=42651.30/min 
[750000], rate=42816.37/min 
[760000], rate=43018.87/min 
[770000], rate=43258.43/min 
[780000], rate=43494.42/min 
[790000], rate=43726.94/min 
[800000], rate=43956.04/min 
[810000], rate=44141.69/min 
[820000], rate=44244.60/min 
[830000], rate=44504.02/min 
[840000], rate=44720.50/min 
[850000], rate=44854.88/min 
[860000], rate=44986.92/min 
[870000], rate=45194.81/min 
[880000], rate=45244.22/min 
[890000], rate=45369.58/min 
[900000], rate=45378.15/min 
[910000], rate=45500.00/min 
[920000], rate=45469.52/min 
[930000], rate=45625.51/min 
[940000], rate=45816.41/min 
[950000], rate=45709.70/min 
[960000], rate=45569.62/min 
[970000], rate=45433.26/min 
[980000], rate=45335.39/min 
[990000], rate=45171.10/min 
[1000000], rate=45045.05/min 
[1010000], rate=44988.86/min 
[1020000], rate=44933.92/min 
[1030000], rate=44782.61/min 
[1040000], rate=44699.14/min 
[1050000], rate=44617.56/min 
[1060000], rate=44537.82/min 
[1070000], rate=44459.83/min 
[1080000], rate=44232.08/min 
[1090000], rate=43600.00/min 
[1100000], rate=42968.75/min 
[1110000], rate=42555.91/min 
[1120000], rate=42184.56/min 
[1130000], rate=41748.77/min 
[1140000], rate=41429.44/min 
[1150000], rate=41120.38/min 
[1160000], rate=40749.41/min 
[1170000], rate=40695.65/min 
[1180000], rate=40526.62/min 
[1190000], rate=40683.76/min 
[1200000], rate=40839.48/min 
[1210000], rate=40993.79/min 
[1220000], rate=41123.60/min 
[1230000], rate=41275.17/min 
[1240000], rate=41425.39/min 
[1250000], rate=41574.28/min 
[1260000], rate=41721.85/min 
[1270000], rate=41868.13/min 
[1280000], rate=42013.13/min 
[1290000], rate=42202.84/min 
[1300000], rate=42368.28/min 
[1310000], rate=42371.97/min 
[1320000], rate=42398.29/min 
[1330000], rate=42514.65/min 
[1340000], rate=42607.31/min 
[1350000], rate=42902.54/min 
[1360000], rate=43220.34/min 
[1370000], rate=43515.09/min 
[1380000], rate=43670.89/min 
[1390000], rate=43825.54/min 
[1400000], rate=43956.04/min 
[1410000], rate=44108.45/min 
[1420000], rate=44236.76/min 
[1430000], rate=44479.00/min 
[1440000], rate=44330.43/min 
[1450000], rate=44365.12/min 
[1460000], rate=44467.01/min 
[1470000], rate=44635.63/min 
[1480000], rate=44780.64/min 
[1490000], rate=44924.62/min 
[1500000], rate=45022.51/min 
[1510000], rate=44895.94/min 
[1520000], rate=44970.41/min 
[1530000], rate=45221.67/min 
[1540000], rate=45517.24/min 
[1550000], rate=45790.25/min 
[1560000], rate=45995.09/min 
[1570000], rate=46131.24/min 
[1580000], rate=46221.36/min 
[1590000], rate=46153.85/min 
[1600000], rate=46087.37/min 
[1610000], rate=46087.79/min 
[1620000], rate=45979.19/min 
[1630000], rate=45807.96/min 
[1640000], rate=45534.47/min 
[1650000], rate=45267.49/min 
[1660000], rate=45190.56/min 
[1670000], rate=45013.48/min 
[1680000], rate=44800.00/min 
[1690000], rate=44708.99/min 
[1700000], rate=44638.95/min 
[1710000], rate=44608.70/min 
[1720000], rate=44675.32/min 
[1730000], rate=44492.07/min 
[1740000], rate=44293.59/min 
[1750000], rate=44025.16/min 
[1760000], rate=43835.62/min 
[1770000], rate=43649.82/min 
[1780000], rate=43449.96/min 
[1790000], rate=43271.56/min 
[1800000], rate=43148.22/min 
[1810000], rate=43249.70/min 
[1820000], rate=43367.75/min 
[1830000], rate=43502.38/min 
[1840000], rate=43636.36/min 
[1850000], rate=43752.46/min 
[1860000], rate=43867.92/min 
[1870000], rate=43982.75/min 
[1880000], rate=43993.76/min 
[1890000], rate=43800.70/min 
[1900000], rate=43863.02/min 
[1910000], rate=43924.88/min 
[1920000], rate=44003.06/min 
[1930000], rate=44080.70/min 
[1940000], rate=44107.62/min 
[1950000], rate=43951.92/min 
[1960000], rate=43962.62/min 
[1970000], rate=44038.75/min 
[1980000], rate=44147.16/min 
[1990000], rate=44189.49/min 
[2000000], rate=44101.43/min 
[2010000], rate=43998.54/min 
[2020000], rate=44040.70/min 
[2030000], rate=44066.57/min 
[2040000], rate=44108.11/min 
[2050000], rate=44196.91/min 
[2060000], rate=44285.20/min 
[2070000], rate=44388.85/min 
[2080000], rate=44365.45/min 
[2090000], rate=44139.39/min 
[2100000], rate=43917.74/min 
[2110000], rate=43760.80/min 
[2120000], rate=43621.40/min 
[2130000], rate=43498.98/min 
[2140000], rate=43393.04/min 
[2150000], rate=43405.11/min 
[2160000], rate=43315.51/min 
[2170000], rate=43227.09/min 
[2180000], rate=43154.07/min 
[2190000], rate=43053.74/min 
[2200000], rate=42982.74/min 
[2210000], rate=42898.74/min 
[2220000], rate=42829.58/min 
[2230000], rate=42733.95/min 
[2240000], rate=42653.13/min 
[2250000], rate=42600.19/min 
[2260000], rate=42587.94/min 
[2270000], rate=42575.80/min 
[2280000], rate=42603.55/min 
[2290000], rate=42578.25/min 
[2300000], rate=42592.59/min 
[2310000], rate=42580.65/min 
[2320000], rate=42581.83/min 
[2330000], rate=42518.25/min 
[2340000], rate=42519.69/min 
[2350000], rate=42521.11/min 
[2360000], rate=42357.16/min 
[2370000], rate=42046.13/min 
[2380000], rate=42049.47/min 
[2390000], rate=42065.12/min 
[2400000], rate=42007.00/min 
[2410000], rate=42022.67/min 
[2420000], rate=42026.05/min 
[2430000], rate=42053.65/min 
[2440000], rate=42081.06/min 
[2450000], rate=42120.34/min 
[2460000], rate=42171.43/min 
[2470000], rate=42222.22/min 
[2480000], rate=42272.73/min 
[2490000], rate=42322.95/min 
[2500000], rate=42372.88/min 
[2510000], rate=42422.54/min 
[2520000], rate=42483.84/min 
[2530000], rate=42473.42/min 
[2540000], rate=42286.35/min 
[2550000], rate=42160.37/min 
[2560000], rate=42082.19/min 
[2570000], rate=42154.18/min 
[2580000], rate=42179.84/min 
[2590000], rate=42045.45/min 
[2600000], rate=41767.07/min 
[2610000], rate=41693.29/min 
[2620000], rate=41565.31/min 
[2630000], rate=41504.47/min 
[2640000], rate=41444.27/min 
[2650000], rate=41406.25/min 
[2660000], rate=41282.98/min 
[2670000], rate=41267.39/min 
[2680000], rate=41220.20/min 
[2690000], rate=41205.00/min 
[2700000], rate=41200.41/min 
[2710000], rate=41195.84/min 
[2720000], rate=41201.72/min 
[2730000], rate=41217.92/min 
[2740000], rate=41223.67/min 
[2750000], rate=41229.39/min 
[2760000], rate=41245.33/min 
[2770000], rate=41281.67/min 
[2780000], rate=41307.58/min 
[2790000], rate=41353.75/min 
[2800000], rate=41399.70/min 
[2810000], rate=41455.62/min 
[2820000], rate=41490.93/min 
[2830000], rate=41546.37/min 
[2840000], rate=41601.56/min 
[2850000], rate=41666.67/min 
[2860000], rate=41721.37/min 
[2870000], rate=41745.45/min 
[2880000], rate=41648.59/min 
[2890000], rate=41562.80/min 
[2900000], rate=41487.84/min 
[2910000], rate=41384.21/min -building interval tree based on /tmp/nxf.I3lIs64fuX/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=25000.00/min 
[20000], rate=25531.91/min 
[30000], rate=26865.67/min 
[40000], rate=26666.67/min 
[50000], rate=27777.78/min 
[60000], rate=28571.43/min 
[70000], rate=29166.67/min 
[80000], rate=29813.66/min 
[90000], rate=30167.60/min 
[100000], rate=30769.23/min 
[110000], rate=31428.57/min 
[120000], rate=31858.41/min 
[130000], rate=32365.15/min 
[140000], rate=32812.50/min 
[150000], rate=33582.09/min 
[160000], rate=33802.82/min 
[170000], rate=34000.00/min 
[180000], rate=34285.71/min 
[190000], rate=34650.46/min 
[200000], rate=34985.42/min 
[210000], rate=35694.05/min 
[220000], rate=36164.38/min 
[230000], rate=36800.00/min 
[240000], rate=37113.40/min 
[250000], rate=37406.48/min 
[260000], rate=37864.08/min 
[270000], rate=38297.87/min 
[280000], rate=38620.69/min 
[290000], rate=39013.45/min 
[300000], rate=39387.31/min 
[310000], rate=39658.85/min 
[320000], rate=40083.51/min 
[330000], rate=40408.16/min 
[340000], rate=40718.56/min 
[350000], rate=40462.43/min 
[360000], rate=40754.72/min 
[370000], rate=41111.11/min 
[380000], rate=41304.35/min 
[390000], rate=41637.01/min 
[400000], rate=41884.82/min 
[410000], rate=42195.54/min 
[420000], rate=42567.57/min 
[430000], rate=42928.45/min 
[440000], rate=43349.75/min 
[450000], rate=43689.32/min 
[460000], rate=44019.14/min 
[470000], rate=44339.62/min 
[480000], rate=44651.16/min 
[490000], rate=44954.13/min 
[500000], rate=45317.22/min 
[510000], rate=45671.64/min 
[520000], rate=46085.67/min 
[530000], rate=46491.23/min 
[540000], rate=46956.52/min 
[550000], rate=47345.77/min 
[560000], rate=47592.07/min 
[570000], rate=47966.34/min 
[580000], rate=48333.33/min 
[590000], rate=48693.26/min 
[600000], rate=48846.68/min 
[610000], rate=48735.02/min 
[620000], rate=48563.97/min 
[630000], rate=48152.87/min 
[640000], rate=48484.85/min 
[650000], rate=48750.00/min 
[660000], rate=48648.65/min 
[670000], rate=48317.31/min 
[680000], rate=48000.00/min 
[690000], rate=47640.97/min 
[700000], rate=47457.63/min 
[710000], rate=47228.38/min 
[720000], rate=47007.62/min 
[730000], rate=46695.10/min 
[740000], rate=46540.88/min 
[750000], rate=45965.27/min 
[760000], rate=45418.33/min 
[770000], rate=45205.48/min 
[780000], rate=44913.63/min 
[790000], rate=44674.84/min 
[800000], rate=44198.90/min 
[810000], rate=43862.82/min 
[820000], rate=43044.62/min 
[830000], rate=42746.78/min 
[840000], rate=42711.86/min 
[850000], rate=42535.45/min 
[860000], rate=42295.08/min 
[870000], rate=42096.77/min 
[880000], rate=42038.22/min 
[890000], rate=41363.28/min 
[900000], rate=40510.13/min 
[910000], rate=39854.01/min 
[920000], rate=39400.43/min 
[930000], rate=38830.90/min 
[940000], rate=38237.29/min 
[950000], rate=37949.40/min 
[960000], rate=37597.91/min 
[970000], rate=37236.08/min 
[980000], rate=37357.05/min 
[990000], rate=37476.34/min 
[1000000], rate=37617.55/min 
[1010000], rate=37733.50/min 
[1020000], rate=37894.74/min 
[1030000], rate=38030.77/min 
[1040000], rate=38211.88/min 
[1050000], rate=38344.49/min 
[1060000], rate=38522.11/min 
[1070000], rate=38698.01/min 
[1080000], rate=38617.40/min 
[1090000], rate=38425.38/min 
[1100000], rate=38150.29/min 
[1110000], rate=37927.11/min 
[1120000], rate=37689.29/min 
[1130000], rate=37708.57/min 
[1140000], rate=37623.76/min 
[1150000], rate=37297.30/min 
[1160000], rate=37159.64/min 
[1170000], rate=37083.99/min 
[1180000], rate=36741.05/min 
[1190000], rate=36042.40/min 
[1200000], rate=35294.12/min 
[1210000], rate=34786.78/min 
[1220000], rate=34708.39/min 
[1230000], rate=34150.86/min 
[1240000], rate=33726.20/min 
[1250000], rate=33244.68/min 
[1260000], rate=32898.17/min 
[1270000], rate=32536.29/min 
[1280000], rate=32214.77/min 
[1290000], rate=32263.44/min 
[1300000], rate=32311.52/min 
[1310000], rate=32359.00/min 
[1320000], rate=32419.16/min 
[1330000], rate=32491.86/min 
[1340000], rate=32550.61/min 
[1350000], rate=32464.93/min 
[1360000], rate=32265.72/min 
[1370000], rate=32096.84/min 
[1380000], rate=31981.46/min 
[1390000], rate=31880.73/min 
[1400000], rate=31662.27/min 
[1410000], rate=31721.03/min 
[1420000], rate=31625.84/min 
[1430000], rate=31451.61/min 
[1440000], rate=31475.41/min 
[1450000], rate=31533.16/min 
[1460000], rate=31601.73/min 
[1470000], rate=31681.03/min 
[1480000], rate=31759.66/min 
[1490000], rate=31848.95/min 
[1500000], rate=31937.54/min 
[1510000], rate=32025.45/min 
[1520000], rate=32022.47/min 
[1530000], rate=32120.36/min 
[1540000], rate=32206.34/min 
[1550000], rate=32291.67/min 
[1560000], rate=32376.34/min 
[1570000], rate=32471.56/min 
[1580000], rate=32554.95/min 
[1590000], rate=32648.87/min 
[1600000], rate=32742.16/min 
[1610000], rate=32845.97/min 
[1620000], rate=32949.15/min 
[1630000], rate=33051.71/min 
[1640000], rate=32997.99/min 
[1650000], rate=32989.00/min 
[1660000], rate=33100.70/min 
[1670000], rate=33222.81/min 
[1680000], rate=33333.33/min 
[1690000], rate=33443.27/min 
[1700000], rate=33552.63/min 
[1710000], rate=33672.46/min 
[1720000], rate=33637.55/min 
[1730000], rate=33581.37/min 
[1740000], rate=33558.34/min 
[1750000], rate=33524.90/min 
[1760000], rate=33428.30/min 
[1770000], rate=33427.76/min 
[1780000], rate=33416.77/min 
[1790000], rate=33395.52/min 
[1800000], rate=33405.51/min 
[1810000], rate=33405.11/min 
[1820000], rate=33404.71/min 
[1830000], rate=33414.49/min 
[1840000], rate=33434.28/min 
[1850000], rate=33443.81/min 
[1860000], rate=33283.63/min 
[1870000], rate=33156.03/min 
[1880000], rate=33108.31/min 
[1890000], rate=33032.33/min 
[1900000], rate=33072.24/min 
[1910000], rate=33121.39/min 
[1920000], rate=33160.62/min 
[1930000], rate=33180.52/min 
[1940000], rate=33238.15/min 
[1950000], rate=33295.39/min 
[1960000], rate=33352.24/min 
[1970000], rate=33418.15/min 
[1980000], rate=33483.65/min 
[1990000], rate=33558.18/min 
[2000000], rate=33604.03/min 
[2010000], rate=33509.31/min 
[2020000], rate=33370.04/min 
[2030000], rate=33333.33/min 
[2040000], rate=33406.11/min 
[2050000], rate=33487.61/min 
[2060000], rate=33568.71/min 
[2070000], rate=33667.66/min 
[2080000], rate=33775.37/min 
[2090000], rate=33864.43/min 
[2100000], rate=33953.11/min 
[2110000], rate=34050.56/min 
[2120000], rate=34092.74/min 
[2130000], rate=33962.26/min 
[2140000], rate=33914.42/min 
[2150000], rate=33902.76/min 
[2160000], rate=33900.08/min 
[2170000], rate=33870.97/min 
[2180000], rate=33850.93/min 
[2190000], rate=33831.10/min 
[2200000], rate=33759.59/min 
[2210000], rate=33757.64/min 
[2220000], rate=33798.53/min 
[2230000], rate=33804.95/min 
[2240000], rate=33819.83/min 
[2250000], rate=33834.59/min 
[2260000], rate=33840.78/min 
[2270000], rate=33863.75/min 
[2280000], rate=33911.75/min 
[2290000], rate=33959.47/min 
[2300000], rate=34006.90/min 
[2310000], rate=34070.80/min 
[2320000], rate=34134.38/min 
[2330000], rate=34197.65/min 
[2340000], rate=34260.61/min 
[2350000], rate=34331.63/min 
[2360000], rate=34393.98/min 
[2370000], rate=34456.02/min 
[2380000], rate=34517.77/min 
[2390000], rate=34587.55/min 
[2400000], rate=34665.38/min 
[2410000], rate=34742.91/min 
[2420000], rate=34811.80/min 
[2430000], rate=34922.16/min 
[2440000], rate=34998.80/min 
[2450000], rate=35083.53/min 
[2460000], rate=35159.60/min 
[2470000], rate=35235.38/min 
[2480000], rate=35310.87/min 
[2490000], rate=35394.46/min 
[2500000], rate=35469.38/min 
[2510000], rate=35552.41/min 
[2520000], rate=35635.16/min 
[2530000], rate=35726.05/min 
[2540000], rate=35766.25/min 
[2550000], rate=35789.47/min 
[2560000], rate=35812.54/min 
[2570000], rate=35843.79/min 
[2580000], rate=35866.54/min 
[2590000], rate=35905.73/min 
[2600000], rate=35952.98/min 
[2610000], rate=35983.46/min 
[2620000], rate=36013.75/min 
[2630000], rate=36043.86/min 
[2640000], rate=36090.23/min 
[2650000], rate=36136.36/min 
[2660000], rate=36182.27/min 
[2670000], rate=36227.95/min 
[2680000], rate=36281.59/min 
[2690000], rate=36326.81/min 
[2700000], rate=36379.97/min 
[2710000], rate=36416.57/min 
[2720000], rate=36477.43/min 
[2730000], rate=36529.88/min 
[2740000], rate=36582.11/min 
[2750000], rate=36642.24/min 
[2760000], rate=36710.26/min 
[2770000], rate=36769.91/min 
[2780000], rate=36829.32/min 
[2790000], rate=36888.50/min 
[2800000], rate=36955.57/min 
[2810000], rate=37030.53/min 
[2820000], rate=37097.13/min 
[2830000], rate=37155.36/min 
[2840000], rate=37237.76/min 
[2850000], rate=37303.66/min 
[2860000], rate=37377.48/min 
[2870000], rate=37442.92/min 
[2880000], rate=37516.28/min 
[2890000], rate=37581.27/min 
[2900000], rate=37654.19/min 
[2910000], rate=37726.88/min 
[2920000], rate=37791.20/min -building interval tree based on /tmp/nxf.I3lIs64fuX/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=85714.29/min 
[20000], rate=85714.29/min 
[30000], rate=90000.00/min 
[40000], rate=82758.62/min 
[50000], rate=76923.08/min 
[60000], rate=73469.39/min 
[70000], rate=72413.79/min 
[80000], rate=71641.79/min 
[90000], rate=71052.63/min 
[100000], rate=70588.24/min 
[110000], rate=70212.77/min 
[120000], rate=70588.24/min 
[130000], rate=70909.09/min 
[140000], rate=71794.87/min 
[150000], rate=72000.00/min 
[160000], rate=72180.45/min 
[170000], rate=72857.14/min 
[180000], rate=72483.22/min 
[190000], rate=69512.20/min 
[200000], rate=67415.73/min 
[210000], rate=66315.79/min 
[220000], rate=64390.24/min 
[230000], rate=63013.70/min 
[240000], rate=62068.97/min 
[250000], rate=61475.41/min 
[260000], rate=60937.50/min 
[270000], rate=60447.76/min 
[280000], rate=60215.05/min 
[290000], rate=59793.81/min 
[300000], rate=59602.65/min 
[310000], rate=59615.38/min 
[320000], rate=59442.72/min 
[330000], rate=59459.46/min 
[340000], rate=59475.22/min 
[350000], rate=59659.09/min 
[360000], rate=59833.80/min 
[370000], rate=60000.00/min 
[380000], rate=60317.46/min 
[390000], rate=60621.76/min 
[400000], rate=60759.49/min 
[410000], rate=61194.03/min 
[420000], rate=61463.41/min 
[430000], rate=61870.50/min 
[440000], rate=62411.35/min 
[450000], rate=62645.01/min 
[460000], rate=63302.75/min 
[470000], rate=63945.58/min 
[480000], rate=64142.54/min 
[490000], rate=63225.81/min 
[500000], rate=62370.06/min 
[510000], rate=61445.78/min 
[520000], rate=60818.71/min 
[530000], rate=59439.25/min 
[540000], rate=58695.65/min 
[550000], rate=58407.08/min 
[560000], rate=58031.09/min 
[570000], rate=57770.27/min 
[580000], rate=57615.89/min 
[590000], rate=57281.55/min 
[600000], rate=55384.62/min 
[610000], rate=54142.01/min 
[620000], rate=52765.96/min 
[630000], rate=51639.34/min 
[640000], rate=51474.53/min 
[650000], rate=51724.14/min 
[660000], rate=51832.46/min 
[670000], rate=52005.17/min 
[680000], rate=52173.91/min 
[690000], rate=52405.06/min 
[700000], rate=52369.08/min 
[710000], rate=52592.59/min 
[720000], rate=52876.38/min 
[730000], rate=53155.34/min 
[740000], rate=52794.29/min 
[750000], rate=51963.05/min 
[760000], rate=49297.30/min 
[770000], rate=47776.63/min 
[780000], rate=47464.50/min 
[790000], rate=47400.00/min 
[800000], rate=46466.60/min 
[810000], rate=46241.67/min 
[820000], rate=46110.59/min 
[830000], rate=45730.03/min 
[840000], rate=45364.54/min 
[850000], rate=45092.84/min 
[860000], rate=44140.29/min 
[870000], rate=43536.28/min 
[880000], rate=43207.86/min 
[890000], rate=42857.14/min 
[900000], rate=42620.36/min 
[910000], rate=42325.58/min 
[920000], rate=42298.85/min 
[930000], rate=42401.22/min 
[940000], rate=42152.47/min 
[950000], rate=42128.60/min 
[960000], rate=41678.73/min 
[970000], rate=41630.90/min 
[980000], rate=41554.77/min 
[990000], rate=41684.21/min 
[1000000], rate=41724.62/min 
[1010000], rate=41735.54/min 
[1020000], rate=41774.74/min 
[1030000], rate=41200.00/min 
[1040000], rate=40625.00/min 
[1050000], rate=40750.32/min 
[1060000], rate=40926.64/min 
[1070000], rate=41048.59/min 
[1080000], rate=40729.10/min 
[1090000], rate=39951.13/min 
[1100000], rate=39831.02/min 
[1110000], rate=39501.78/min 
[1120000], rate=39047.07/min 
[1130000], rate=38676.55/min 
[1140000], rate=38600.45/min 
[1150000], rate=38248.34/min 
[1160000], rate=37580.99/min 
[1170000], rate=37142.86/min 
[1180000], rate=36702.95/min 
[1190000], rate=36372.90/min 
[1200000], rate=36054.08/min 
[1210000], rate=36101.44/min 
[1220000], rate=36219.69/min 
[1230000], rate=36354.68/min 
[1240000], rate=36452.72/min 
[1250000], rate=36585.37/min 
[1260000], rate=36716.85/min 
[1270000], rate=36511.74/min 
[1280000], rate=36363.64/min 
[1290000], rate=36423.53/min 
[1300000], rate=36516.85/min 
[1310000], rate=36643.36/min 
[1320000], rate=36768.80/min 
[1330000], rate=36859.12/min 
[1340000], rate=36948.53/min 
[1350000], rate=37020.11/min 
[1360000], rate=37107.78/min 
[1370000], rate=37160.94/min 
[1380000], rate=37213.48/min 
[1390000], rate=37298.75/min 
[1400000], rate=37383.18/min 
[1410000], rate=37466.78/min 
[1420000], rate=37270.34/min 
[1430000], rate=37014.67/min 
[1440000], rate=36797.27/min 
[1450000], rate=36662.45/min 
[1460000], rate=36484.80/min 
[1470000], rate=36341.16/min 
[1480000], rate=36259.70/min 
[1490000], rate=36179.68/min 
[1500000], rate=36086.61/min 
[1510000], rate=36138.81/min 
[1520000], rate=36262.43/min 
[1530000], rate=35761.59/min 
[1540000], rate=35470.25/min 
[1550000], rate=35267.35/min 
[1560000], rate=34964.51/min 
[1570000], rate=34594.20/min 
[1580000], rate=34051.72/min 
[1590000], rate=33627.07/min 
[1600000], rate=33472.80/min 
[1610000], rate=33414.04/min 
[1620000], rate=33230.77/min 
[1630000], rate=33152.54/min 
[1640000], rate=32680.17/min 
[1650000], rate=32480.31/min 
[1660000], rate=32432.43/min 
[1670000], rate=32385.26/min 
[1680000], rate=32297.34/min 
[1690000], rate=32200.70/min 
[1700000], rate=32156.37/min 
[1710000], rate=32152.93/min 
[1720000], rate=32089.55/min 
[1730000], rate=32056.83/min 
[1740000], rate=31985.29/min 
[1750000], rate=31712.47/min 
[1760000], rate=31702.19/min 
[1770000], rate=31578.95/min 
[1780000], rate=31421.01/min 
[1790000], rate=31184.67/min 
[1800000], rate=30901.29/min 
[1810000], rate=30617.42/min 
[1820000], rate=30528.38/min 
[1830000], rate=30550.92/min 
[1840000], rate=30313.01/min 
[1850000], rate=30204.08/min 
[1860000], rate=30227.52/min 
[1870000], rate=30275.23/min 
[1880000], rate=30330.73/min 
[1890000], rate=30385.85/min 
[1900000], rate=30432.46/min 
[1910000], rate=30486.83/min 
[1920000], rate=30540.83/min 
[1930000], rate=30602.54/min 
[1940000], rate=30663.86/min 
[1950000], rate=30732.86/min 
[1960000], rate=30785.34/min 
[1970000], rate=30837.46/min 
[1980000], rate=30881.21/min 
[1990000], rate=30924.63/min 
[2000000], rate=30959.75/min 
[2010000], rate=31002.57/min 
[2020000], rate=31053.04/min 
[2030000], rate=31111.11/min 
[2040000], rate=31176.77/min 
[2050000], rate=31226.20/min 
[2060000], rate=31275.30/min 
[2070000], rate=31331.99/min 
[2080000], rate=31396.23/min 
[2090000], rate=31468.01/min 
[2100000], rate=31539.42/min 
[2110000], rate=31602.60/min 
[2120000], rate=31665.42/min 
[2130000], rate=31743.67/min 
[2140000], rate=31829.45/min 
[2150000], rate=31907.00/min 
[2160000], rate=31992.10/min 
[2170000], rate=32076.87/min 
[2180000], rate=32153.39/min 
[2190000], rate=32237.49/min 
[2200000], rate=32329.17/min 
[2210000], rate=32420.54/min 
[2220000], rate=32479.88/min 
[2230000], rate=32538.91/min 
[2240000], rate=32589.72/min 
[2250000], rate=32687.65/min 
[2260000], rate=32753.62/min 
[2270000], rate=32819.28/min 
[2280000], rate=32892.52/min 
[2290000], rate=32957.54/min 
[2300000], rate=33038.07/min 
[2310000], rate=33118.28/min 
[2320000], rate=33198.19/min 
[2330000], rate=33104.43/min 
[2340000], rate=32980.97/min 
[2350000], rate=32867.13/min 
[2360000], rate=32770.19/min 
[2370000], rate=32667.13/min 
[2380000], rate=32565.56/min 
[2390000], rate=32472.83/min 
[2400000], rate=32410.53/min 
[2410000], rate=32312.85/min 
[2420000], rate=32216.55/min 
[2430000], rate=32149.94/min 
[2440000], rate=32084.16/min 
[2450000], rate=32033.12/min 
[2460000], rate=31968.81/min 
[2470000], rate=31919.02/min 
[2480000], rate=31903.95/min 
[2490000], rate=31916.26/min 
[2500000], rate=31928.48/min 
[2510000], rate=31933.84/min 
[2520000], rate=31945.91/min 
[2530000], rate=31971.36/min 
[2540000], rate=31996.64/min 
[2550000], rate=32035.18/min 
[2560000], rate=32073.50/min 
[2570000], rate=32091.57/min 
[2580000], rate=32122.85/min 
[2590000], rate=32160.60/min 
[2600000], rate=32191.50/min 
[2610000], rate=32228.85/min 
[2620000], rate=32272.63/min 
[2630000], rate=32316.20/min 
[2640000], rate=32359.55/min 
[2650000], rate=32402.69/min 
[2660000], rate=32452.22/min 
[2670000], rate=32501.52/min 
[2680000], rate=32550.61/min 
[2690000], rate=32606.06/min 
[2700000], rate=32654.71/min 
[2710000], rate=32709.72/min 
[2720000], rate=32771.08/min 
[2730000], rate=32832.23/min 
[2740000], rate=32893.16/min 
[2750000], rate=32960.45/min 
[2760000], rate=33027.52/min 
[2770000], rate=33100.98/min 
[2780000], rate=33167.63/min 
[2790000], rate=33247.27/min 
[2800000], rate=33313.50/min 
[2810000], rate=33372.92/min 
[2820000], rate=33438.74/min 
[2830000], rate=33504.34/min 
[2840000], rate=33576.35/min 
[2850000], rate=33634.93/min 
[2860000], rate=33706.54/min 
[2870000], rate=33771.33/min 
[2880000], rate=33842.54/min 
[2890000], rate=33920.19/min 
[2900000], rate=33997.66/min 
[2910000], rate=34074.94/min -building interval tree based on /tmp/nxf.I3lIs64fuX/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=66666.67/min 
[20000], rate=70588.24/min 
[30000], rate=75000.00/min 
[40000], rate=85714.29/min 
[50000], rate=88235.29/min 
[60000], rate=87804.88/min 
[70000], rate=89361.70/min 
[80000], rate=92307.69/min 
[90000], rate=93103.45/min 
[100000], rate=96774.19/min 
[110000], rate=94285.71/min 
[120000], rate=92307.69/min 
[130000], rate=90697.67/min 
[140000], rate=93333.33/min 
[150000], rate=94736.84/min 
[160000], rate=94117.65/min 
[170000], rate=94444.44/min 
[180000], rate=94736.84/min 
[190000], rate=95798.32/min 
[200000], rate=97560.98/min 
[210000], rate=95454.55/min 
[220000], rate=94285.71/min 
[230000], rate=93877.55/min 
[240000], rate=92903.23/min 
[250000], rate=94339.62/min 
[260000], rate=94545.45/min 
[270000], rate=95294.12/min 
[280000], rate=95454.55/min 
[290000], rate=95604.40/min 
[300000], rate=95238.10/min 
[310000], rate=94897.96/min 
[320000], rate=94581.28/min 
[330000], rate=93838.86/min 
[340000], rate=93577.98/min 
[350000], rate=93333.33/min 
[360000], rate=94323.14/min 
[370000], rate=94871.79/min 
[380000], rate=94605.81/min 
[390000], rate=94736.84/min 
[400000], rate=95238.10/min 
[410000], rate=95348.84/min 
[420000], rate=91304.35/min 
[430000], rate=79384.62/min 
[440000], rate=68393.78/min 
[450000], rate=61926.61/min 
[460000], rate=57024.79/min 
[470000], rate=52513.97/min 
[480000], rate=47840.53/min 
[490000], rate=42424.24/min 
[500000], rate=40650.41/min 
[510000], rate=38931.30/min 
[520000], rate=37500.00/min 
[530000], rate=36136.36/min 
[540000], rate=35027.03/min 
[550000], rate=33165.83/min 
[560000], rate=31343.28/min 
[570000], rate=30508.47/min 
[580000], rate=29642.25/min 
[590000], rate=28757.11/min 
[600000], rate=27522.94/min 
[610000], rate=26656.96/min 
[620000], rate=25637.49/min 
[630000], rate=25420.31/min 
[640000], rate=25180.33/min 
[650000], rate=24920.13/min 
[660000], rate=24750.00/min 
[670000], rate=23900.12/min 
[680000], rate=23103.06/min 
[690000], rate=22439.02/min 
[700000], rate=22093.63/min 
[710000], rate=21846.15/min 
[720000], rate=21280.79/min 
[730000], rate=20966.97/min 
[740000], rate=20933.52/min 
[750000], rate=20756.46/min 
[760000], rate=20402.68/min 
[770000], rate=20130.72/min 
[780000], rate=19864.18/min 
[790000], rate=19643.60/min 
[800000], rate=19583.84/min 
[810000], rate=19660.19/min 
[820000], rate=19735.26/min 
[830000], rate=19809.07/min 
[840000], rate=19787.99/min 
[850000], rate=19813.52/min 
[860000], rate=19627.23/min 
[870000], rate=19506.73/min 
[880000], rate=19533.85/min 
[890000], rate=19625.14/min 
[900000], rate=19708.03/min 
[910000], rate=19654.43/min 
[920000], rate=19588.36/min 
[930000], rate=19537.82/min 
[940000], rate=19434.87/min 
[950000], rate=19487.18/min 
[960000], rate=19578.52/min 
[970000], rate=19662.16/min 
[980000], rate=19744.80/min 
[990000], rate=19826.44/min 
[1000000], rate=19907.10/min 
[1010000], rate=19986.81/min 
[1020000], rate=20072.15/min 
[1030000], rate=20149.98/min 
[1040000], rate=20226.90/min 
[1050000], rate=20289.86/min 
[1060000], rate=20229.01/min 
[1070000], rate=20144.34/min 
[1080000], rate=20030.91/min 
[1090000], rate=20012.24/min 
[1100000], rate=20097.44/min 
[1110000], rate=20139.10/min 
[1120000], rate=20204.45/min 
[1130000], rate=20275.12/min 
[1140000], rate=20345.03/min 
[1150000], rate=20420.24/min 
[1160000], rate=20488.67/min 
[1170000], rate=20562.39/min 
[1180000], rate=20629.37/min 
[1190000], rate=20701.65/min 
[1200000], rate=20779.22/min 
[1210000], rate=20862.07/min 
[1220000], rate=20950.20/min 
[1230000], rate=21037.63/min 
[1240000], rate=21136.36/min 
[1250000], rate=21222.41/min 
[1260000], rate=21319.80/min 
[1270000], rate=21416.53/min 
[1280000], rate=21512.61/min 
[1290000], rate=21614.07/min 
[1300000], rate=21714.92/min 
[1310000], rate=21821.21/min 
[1320000], rate=21926.91/min 
[1330000], rate=22038.11/min 
[1340000], rate=22148.76/min 
[1350000], rate=22258.86/min 
[1360000], rate=22368.42/min 
[1370000], rate=22471.30/min 
[1380000], rate=22579.77/min 
[1390000], rate=22693.88/min 
[1400000], rate=22807.49/min 
[1410000], rate=22914.41/min 
[1420000], rate=23027.03/min 
[1430000], rate=23139.16/min 
[1440000], rate=23257.07/min 
[1450000], rate=23374.53/min 
[1460000], rate=23466.38/min 
[1470000], rate=23520.00/min 
[1480000], rate=23585.66/min 
[1490000], rate=23657.05/min 
[1500000], rate=23715.42/min 
[1510000], rate=23785.77/min 
[1520000], rate=23855.61/min 
[1530000], rate=23924.94/min 
[1540000], rate=24000.00/min 
[1550000], rate=24068.32/min 
[1560000], rate=24142.38/min 
[1570000], rate=24228.40/min 
[1580000], rate=24313.93/min 
[1590000], rate=24398.98/min 
[1600000], rate=24477.31/min 
[1610000], rate=24548.92/min 
[1620000], rate=24632.54/min 
[1630000], rate=24721.94/min 
[1640000], rate=24810.89/min 
[1650000], rate=24899.40/min 
[1660000], rate=25000.00/min 
[1670000], rate=25087.63/min 
[1680000], rate=25174.83/min 
[1690000], rate=25261.58/min 
[1700000], rate=25347.91/min 
[1710000], rate=25440.12/min 
[1720000], rate=25538.23/min 
[1730000], rate=25623.30/min 
[1740000], rate=25720.62/min 
[1750000], rate=25817.56/min 
[1760000], rate=25907.75/min 
[1770000], rate=26003.92/min 
[1780000], rate=26112.47/min 
[1790000], rate=26207.91/min 
[1800000], rate=26309.38/min 
[1810000], rate=26404.08/min 
[1820000], rate=26511.29/min 
[1830000], rate=26534.56/min 
[1840000], rate=26474.82/min 
[1850000], rate=26428.57/min 
[1860000], rate=26358.05/min 
[1870000], rate=26313.32/min 
[1880000], rate=26281.45/min 
[1890000], rate=26268.24/min 
[1900000], rate=26231.02/min 
[1910000], rate=26212.26/min 
[1920000], rate=26217.57/min 
[1930000], rate=26210.96/min 
[1940000], rate=26192.62/min 
[1950000], rate=26197.94/min 
[1960000], rate=26209.05/min 
[1970000], rate=26231.69/min 
[1980000], rate=26248.34/min 
[1990000], rate=26264.85/min 
[2000000], rate=26298.49/min 
[2010000], rate=26326.13/min 
[2020000], rate=26353.56/min 
[2030000], rate=26380.77/min 
[2040000], rate=26424.87/min 
[2050000], rate=26468.69/min 
[2060000], rate=26512.23/min 
[2070000], rate=26566.84/min 
[2080000], rate=26626.84/min 
[2090000], rate=26692.21/min 
[2100000], rate=26757.27/min 
[2110000], rate=26816.35/min 
[2120000], rate=26869.46/min 
[2130000], rate=26922.27/min 
[2140000], rate=26980.46/min 
[2150000], rate=27032.69/min 
[2160000], rate=27090.30/min 
[2170000], rate=27153.28/min 
[2180000], rate=27210.32/min 
[2190000], rate=27267.07/min 
[2200000], rate=27329.19/min 
[2210000], rate=27391.03/min 
[2220000], rate=27452.60/min 
[2230000], rate=27519.54/min 
[2240000], rate=27586.21/min 
[2250000], rate=27652.60/min 
[2260000], rate=27718.72/min 
[2270000], rate=27790.25/min 
[2280000], rate=27861.51/min 
[2290000], rate=27932.51/min 
[2300000], rate=28008.93/min 
[2310000], rate=28079.42/min 
[2320000], rate=28155.34/min 
[2330000], rate=28231.02/min 
[2340000], rate=28306.45/min 
[2350000], rate=28387.36/min 
[2360000], rate=28462.31/min 
[2370000], rate=28548.48/min 
[2380000], rate=28628.71/min 
[2390000], rate=28702.96/min 
[2400000], rate=28788.48/min 
[2410000], rate=28868.04/min 
[2420000], rate=28953.14/min 
[2430000], rate=29014.93/min 
[2440000], rate=29047.62/min 
[2450000], rate=29074.37/min 
[2460000], rate=29100.95/min 
[2470000], rate=29133.08/min 
[2480000], rate=29170.75/min 
[2490000], rate=29219.64/min 
[2500000], rate=29274.00/min 
[2510000], rate=29322.43/min 
[2520000], rate=29364.93/min 
[2530000], rate=29401.51/min 
[2540000], rate=29449.28/min 
[2550000], rate=29496.82/min 
[2560000], rate=29544.14/min 
[2570000], rate=29596.93/min 
[2580000], rate=29655.17/min 
[2590000], rate=29713.19/min 
[2600000], rate=29765.31/min 
[2610000], rate=29811.54/min 
[2620000], rate=29863.22/min 
[2630000], rate=29914.69/min 
[2640000], rate=29960.28/min 
[2650000], rate=30005.66/min 
[2660000], rate=30056.50/min 
[2670000], rate=30101.47/min 
[2680000], rate=30151.88/min 
[2690000], rate=30207.75/min 
[2700000], rate=30263.40/min 
[2710000], rate=30318.85/min 
[2720000], rate=30379.75/min 
[2730000], rate=30446.10/min 
[2740000], rate=30506.59/min 
[2750000], rate=30572.54/min 
[2760000], rate=30632.63/min 
[2770000], rate=30692.52/min 
[2780000], rate=30757.88/min 
[2790000], rate=30823.05/min 
[2800000], rate=30899.39/min 
[2810000], rate=30969.88/min 
[2820000], rate=31040.18/min 
[2830000], rate=31104.60/min 
[2840000], rate=31174.53/min 
[2850000], rate=31250.00/min 
[2860000], rate=31319.58/min 
[2870000], rate=31388.99/min 
[2880000], rate=31458.22/min 
[2890000], rate=31533.01/min 
[2900000], rate=31607.63/min 
[2910000], rate=31687.84/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.I3lIs64fuX/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 6000000.00 reads per min processed...  
 12000000.00 reads per min processed...  
 9000000.00 reads per min processed...  
 8000000.00 reads per min processed...  
 7500000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 5400000.00 reads per min processed...  
 5454545.45 reads per min processed...  
 5500000.00 reads per min processed...  
 5142857.14 reads per min processed...  
 5200000.00 reads per min processed...  
 5250000.00 reads per min processed...  
 5000000.00 reads per min processed...  
 5052631.58 reads per min processed...  
 5100000.00 reads per min processed...  
 5142857.14 reads per min processed...  
 4956521.74 reads per min processed...  
 5000000.00 reads per min processed...  
 5040000.00 reads per min processed...  
 4888888.89 reads per min processed...  
 4928571.43 reads per min processed...  
 4800000.00 reads per min processed...  
 4838709.68 reads per min processed...  
 4875000.00 reads per min processed...  
 4764705.88 reads per min processed...  
 4800000.00 reads per min processed...  
 4702702.70 reads per min processed...  
 4736842.11 reads per min processed...  
 4650000.00 reads per min processed...  
 4682926.83 reads per min processed...  
 4714285.71 reads per min processed...  
 4636363.64 reads per min processed...  
 4666666.67 reads per min processed...  
 4695652.17 reads per min processed...  
 4723404.26 reads per min processed...  
 4653061.22 reads per min processed...  
 4680000.00 reads per min processed...  
 4705882.35 reads per min processed...  
 4641509.43 reads per min processed...  
 4666666.67 reads per min processed...  
 4690909.09 reads per min processed...  
 4714285.71 reads per min processed...  
 4655172.41 reads per min processed...  
 4677966.10 reads per min processed...  
 4700000.00 reads per min processed...  
 4721311.48 reads per min processed...  
 4741935.48 reads per min processed...  
 4761904.76 reads per min processed...  
 4707692.31 reads per min processed...  
 4727272.73 reads per min processed...  
 4818181.82 reads per min processed...  
 4835820.90 reads per min processed...  
 4852941.18 reads per min processed...  
 4941176.47 reads per min processed...  
 4956521.74 reads per min processed...  
 4901408.45 reads per min processed...  
 4916666.67 reads per min processed...  
 4931506.85 reads per min processed...  
 4880000.00 reads per min processed...  
 4894736.84 reads per min processed...  
 4909090.91 reads per min processed...  
 4923076.92 reads per min processed...  
 4936708.86 reads per min processed...  
 4950000.00 reads per min processed...  
 4902439.02 reads per min processed...  
 4915662.65 reads per min processed...  
 4928571.43 reads per min processed...  
 4941176.47 reads per min processed...  
 4896551.72 reads per min processed...  
 4909090.91 reads per min processed...  
 4921348.31 reads per min processed...  
 4933333.33 reads per min processed...  
 4891304.35 reads per min processed...  
 4903225.81 reads per min processed...  
 4914893.62 reads per min processed...  
 4926315.79 reads per min processed...  
 4937500.00 reads per min processed...  
 4897959.18 reads per min processed...  
 4909090.91 reads per min processed...  
 4920000.00 reads per min processed...  
 4882352.94 reads per min processed...  
 4893203.88 reads per min processed...  
 4903846.15 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.I3lIs64fuX/1173_RPC_T1_RNA_SLD_01_A23T55JLT4_2.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.I3lIs64fuX/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -1417506.849418
EM: Round [1] log likelihood: -1417137.721852
EM: Round [2] log likelihood: -1417000.003632
EM: Round [3] log likelihood: -1416933.529295
EM: Round [4] log likelihood: -1416897.971891
EM: Round [5] log likelihood: -1416877.702295
EM: Round [6] log likelihood: -1416865.492254
EM: Round [7] log likelihood: -1416857.737767
EM: Round [8] log likelihood: -1416852.560338
EM: Round [9] log likelihood: -1416848.942858
EM: Round [10] log likelihood: -1416846.312945
EM: Round [11] log likelihood: -1416844.335376
EM: Round [12] log likelihood: -1416842.805769
EM: Round [13] log likelihood: -1416841.594542
EM: Round [14] log likelihood: -1416840.616452
EM: Round [15] log likelihood: -1416839.813493
EM: Round [16] log likelihood: -1416839.144992
EM: Round [17] log likelihood: -1416838.581663
EM: Round [18] log likelihood: -1416838.101927
EM: Round [19] log likelihood: -1416837.689567
EM: Round [20] log likelihood: -1416837.332183
EM: Round [21] log likelihood: -1416837.020148
EM: Round [22] log likelihood: -1416836.745888
EM: Round [23] log likelihood: -1416836.503373
EM: Round [24] log likelihood: -1416836.287753
EM: Round [25] log likelihood: -1416836.095085
EM: Round [26] log likelihood: -1416835.922138
EM: Round [27] log likelihood: -1416835.766243
EM: Round [28] log likelihood: -1416835.625176
EM: Round [29] log likelihood: -1416835.497073
EM: Round [30] log likelihood: -1416835.380362
EM: Round [31] log likelihood: -1416835.273707
EM: Round [32] log likelihood: -1416835.175969
EM: Round [33] log likelihood: -1416835.086170
EM: Round [34] log likelihood: -1416835.003464
EM: Round [35] log likelihood: -1416834.927121
EM: Round [36] log likelihood: -1416834.856504
EM: Round [37] log likelihood: -1416834.791055
EM: Round [38] log likelihood: -1416834.730287
EM: Round [39] log likelihood: -1416834.673769
EM: Round [40] log likelihood: -1416834.621120
EM: Round [41] log likelihood: -1416834.572003
EM: Round [42] log likelihood: -1416834.526115
EM: Round [43] log likelihood: -1416834.483190
EM: Round [44] log likelihood: -1416834.442986
EM: Round [45] log likelihood: -1416834.405288
EM: Round [46] log likelihood: -1416834.369900
EM: Round [47] log likelihood: -1416834.336648
EM: Round [48] log likelihood: -1416834.305372
EM: Round [49] log likelihood: -1416834.275927
EM: Round [50] log likelihood: -1416834.248183
EM: Round [51] log likelihood: -1416834.222020
EM: Round [52] log likelihood: -1416834.197328
EM: Round [53] log likelihood: -1416834.174008
EM: Round [54] log likelihood: -1416834.151968
EM: Round [55] log likelihood: -1416834.131125
EM: Round [56] log likelihood: -1416834.111399
EM: Round [57] log likelihood: -1416834.092721
EM: Round [58] log likelihood: -1416834.075025
EM: Round [59] log likelihood: -1416834.058249
EM: Round [60] log likelihood: -1416834.042337
EM: Round [61] log likelihood: -1416834.027237
EM: Round [62] log likelihood: -1416834.012901
EM: Round [63] log likelihood: -1416833.999283
EM: Round [64] log likelihood: -1416833.986343
EM: Round [65] log likelihood: -1416833.974040
EM: Round [66] log likelihood: -1416833.962339
EM: Round [67] log likelihood: -1416833.951205
EM: Round [68] log likelihood: -1416833.940607
EM: Round [69] log likelihood: -1416833.930516
EM: Round [70] log likelihood: -1416833.920904
EM: Round [71] log likelihood: -1416833.911744
EM: Round [72] log likelihood: -1416833.903013
EM: Round [73] log likelihood: -1416833.894688
EM: Round [74] log likelihood: -1416833.886746
EM: Round [75] log likelihood: -1416833.879169
EM: Round [76] log likelihood: -1416833.871938
EM: Round [77] log likelihood: -1416833.865033
EM: Round [78] log likelihood: -1416833.858440
EM: Round [79] log likelihood: -1416833.852142
EM: Round [80] log likelihood: -1416833.846124
EM: Round [81] log likelihood: -1416833.840372
EM: Round [82] log likelihood: -1416833.834873
EM: Round [83] log likelihood: -1416833.829614
EM: Round [84] log likelihood: -1416833.824585
EM: Round [85] log likelihood: -1416833.819773
EM: Round [86] log likelihood: -1416833.815168
EM: Round [87] log likelihood: -1416833.810760
EM: Round [88] log likelihood: -1416833.806540
EM: Round [89] log likelihood: -1416833.802499
EM: Round [90] log likelihood: -1416833.798628
EM: Round [91] log likelihood: -1416833.794920
EM: Round [92] log likelihood: -1416833.791367
EM: Round [93] log likelihood: -1416833.787961
EM: Round [94] log likelihood: -1416833.784697
EM: Round [95] log likelihood: -1416833.781567
EM: Round [96] log likelihood: -1416833.778565
EM: Round [97] log likelihood: -1416833.775686
EM: Round [98] log likelihood: -1416833.772923
EM: Round [99] log likelihood: -1416833.770273
EM: Round [100] log likelihood: -1416833.767729
EM: Round [101] log likelihood: -1416833.765287
EM: Round [102] log likelihood: -1416833.762943
EM: Round [103] log likelihood: -1416833.760692
EM: Round [104] log likelihood: -1416833.758530
EM: Round [105] log likelihood: -1416833.756454
EM: Round [106] log likelihood: -1416833.754459
EM: Round [107] log likelihood: -1416833.752542
EM: Round [108] log likelihood: -1416833.750700
EM: Round [109] log likelihood: -1416833.748929
EM: Round [110] log likelihood: -1416833.747227
EM: Round [111] log likelihood: -1416833.745590
EM: Round [112] log likelihood: -1416833.744017
EM: Round [113] log likelihood: -1416833.742503
EM: Round [114] log likelihood: -1416833.741047
EM: Round [115] log likelihood: -1416833.739646
EM: Round [116] log likelihood: -1416833.738298
EM: Round [117] log likelihood: -1416833.737001
EM: Round [118] log likelihood: -1416833.735753
EM: Round [119] log likelihood: -1416833.734551
EM: Round [120] log likelihood: -1416833.733394
EM: Round [121] log likelihood: -1416833.732280
EM: Round [122] log likelihood: -1416833.731208
EM: Round [123] log likelihood: -1416833.730175
EM: Round [124] log likelihood: -1416833.729179
EM: Round [125] log likelihood: -1416833.728221
EM: Round [126] log likelihood: -1416833.727297
EM: Round [127] log likelihood: -1416833.726407
EM: Round [128] log likelihood: -1416833.725549
EM: Round [129] log likelihood: -1416833.724722
EM: Round [130] log likelihood: -1416833.723925
EM: Round [131] log likelihood: -1416833.723157
EM: Round [132] log likelihood: -1416833.722416
EM: Round [133] log likelihood: -1416833.721702
EM: Round [134] log likelihood: -1416833.721013
EM: Round [135] log likelihood: -1416833.720348
EM: Round [136] log likelihood: -1416833.719707
EM: Round [137] log likelihood: -1416833.719089
EM: Round [138] log likelihood: -1416833.718492
EM: Round [139] log likelihood: -1416833.717917
EM: Round [140] log likelihood: -1416833.717361
EM: Round [141] log likelihood: -1416833.716825
EM: Round [142] log likelihood: -1416833.716307
EM: Round [143] log likelihood: -1416833.715807
EM: Round [144] log likelihood: -1416833.715325
EM: Round [145] log likelihood: -1416833.714859
EM: Round [146] log likelihood: -1416833.714409
EM: Round [147] log likelihood: -1416833.713975
EM: Round [148] log likelihood: -1416833.713555
EM: Round [149] log likelihood: -1416833.713150
EM: Round [150] log likelihood: -1416833.712758
EM: Round [151] log likelihood: -1416833.712380
EM: Round [152] log likelihood: -1416833.712015
EM: Round [153] log likelihood: -1416833.711662
EM: Round [154] log likelihood: -1416833.711320
EM: Round [155] log likelihood: -1416833.710990
EM: Round [156] log likelihood: -1416833.710672
EM: Round [157] log likelihood: -1416833.710363
EM: Round [158] log likelihood: -1416833.710066
EM: Round [159] log likelihood: -1416833.709778
EM: Round [160] log likelihood: -1416833.709499
EM: Round [161] log likelihood: -1416833.709230
EM: Round [162] log likelihood: -1416833.708969
EM: Round [163] log likelihood: -1416833.708717
EM: Round [164] log likelihood: -1416833.708474
EM: Round [165] log likelihood: -1416833.708238
EM: Round [166] log likelihood: -1416833.708010
EM: Round [167] log likelihood: -1416833.707790
EM: Round [168] log likelihood: -1416833.707576
EM: Round [169] log likelihood: -1416833.707370
EM: Round [170] log likelihood: -1416833.707170
EM: Round [171] log likelihood: -1416833.706977
EM: Round [172] log likelihood: -1416833.706789
EM: Round [173] log likelihood: -1416833.706608
EM: Round [174] log likelihood: -1416833.706433
EM: Round [175] log likelihood: -1416833.706263
EM: Round [176] log likelihood: -1416833.706099
EM: Round [177] log likelihood: -1416833.705940
EM: Round [178] log likelihood: -1416833.705786
EM: Round [179] log likelihood: -1416833.705637
EM: Round [180] log likelihood: -1416833.705492
EM: Round [181] log likelihood: -1416833.705352
EM: Round [182] log likelihood: -1416833.705217
EM: Round [183] log likelihood: -1416833.705086
EM: Round [184] log likelihood: -1416833.704959
EM: Round [185] log likelihood: -1416833.704835
EM: Round [186] log likelihood: -1416833.704716
EM: Round [187] log likelihood: -1416833.704600
EM: Round [188] log likelihood: -1416833.704488
EM: Round [189] log likelihood: -1416833.704380
EM: Round [190] log likelihood: -1416833.704275
EM: Round [191] log likelihood: -1416833.704173
EM: Round [192] log likelihood: -1416833.704074
EM: Stopping iterations at round 192 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -1416167.875819
EM: Round [1] log likelihood: -1415855.494932
EM: Round [2] log likelihood: -1415742.846411
EM: Round [3] log likelihood: -1415689.569666
EM: Round [4] log likelihood: -1415661.530958
EM: Round [5] log likelihood: -1415645.786748
EM: Round [6] log likelihood: -1415636.442083
EM: Round [7] log likelihood: -1415630.592782
EM: Round [8] log likelihood: -1415626.740280
EM: Round [9] log likelihood: -1415624.080827
EM: Round [10] log likelihood: -1415622.166520
EM: Round [11] log likelihood: -1415620.737792
EM: Round [12] log likelihood: -1415619.638184
EM: Round [13] log likelihood: -1415618.769683
EM: Round [14] log likelihood: -1415618.068598
EM: Round [15] log likelihood: -1415617.492118
EM: Round [16] log likelihood: -1415617.010575
EM: Round [17] log likelihood: -1415616.602844
EM: Round [18] log likelihood: -1415616.253523
EM: Round [19] log likelihood: -1415615.951144
EM: Round [20] log likelihood: -1415615.687013
EM: Round [21] log likelihood: -1415615.454433
EM: Round [22] log likelihood: -1415615.248167
EM: Round [23] log likelihood: -1415615.064070
EM: Round [24] log likelihood: -1415614.898822
EM: Round [25] log likelihood: -1415614.749734
EM: Round [26] log likelihood: -1415614.614607
EM: Round [27] log likelihood: -1415614.491627
EM: Round [28] log likelihood: -1415614.379282
EM: Round [29] log likelihood: -1415614.276306
EM: Round [30] log likelihood: -1415614.181627
EM: Round [31] log likelihood: -1415614.094335
EM: Round [32] log likelihood: -1415614.013648
EM: Round [33] log likelihood: -1415613.938894
EM: Round [34] log likelihood: -1415613.869490
EM: Round [35] log likelihood: -1415613.804926
EM: Round [36] log likelihood: -1415613.744760
EM: Round [37] log likelihood: -1415613.688598
EM: Round [38] log likelihood: -1415613.636095
EM: Round [39] log likelihood: -1415613.586943
EM: Round [40] log likelihood: -1415613.540870
EM: Round [41] log likelihood: -1415613.497630
EM: Round [42] log likelihood: -1415613.457004
EM: Round [43] log likelihood: -1415613.418794
EM: Round [44] log likelihood: -1415613.382822
EM: Round [45] log likelihood: -1415613.348925
EM: Round [46] log likelihood: -1415613.316956
EM: Round [47] log likelihood: -1415613.286782
EM: Round [48] log likelihood: -1415613.258281
EM: Round [49] log likelihood: -1415613.231341
EM: Round [50] log likelihood: -1415613.205859
EM: Round [51] log likelihood: -1415613.181741
EM: Round [52] log likelihood: -1415613.158901
EM: Round [53] log likelihood: -1415613.137257
EM: Round [54] log likelihood: -1415613.116738
EM: Round [55] log likelihood: -1415613.097273
EM: Round [56] log likelihood: -1415613.078801
EM: Round [57] log likelihood: -1415613.061261
EM: Round [58] log likelihood: -1415613.044600
EM: Round [59] log likelihood: -1415613.028767
EM: Round [60] log likelihood: -1415613.013713
EM: Round [61] log likelihood: -1415612.999396
EM: Round [62] log likelihood: -1415612.985774
EM: Round [63] log likelihood: -1415612.972808
EM: Round [64] log likelihood: -1415612.960462
EM: Round [65] log likelihood: -1415612.948703
EM: Round [66] log likelihood: -1415612.937499
EM: Round [67] log likelihood: -1415612.926820
EM: Round [68] log likelihood: -1415612.916639
EM: Round [69] log likelihood: -1415612.906929
EM: Round [70] log likelihood: -1415612.897666
EM: Round [71] log likelihood: -1415612.888827
EM: Round [72] log likelihood: -1415612.880389
EM: Round [73] log likelihood: -1415612.872333
EM: Round [74] log likelihood: -1415612.864640
EM: Round [75] log likelihood: -1415612.857290
EM: Round [76] log likelihood: -1415612.850267
EM: Round [77] log likelihood: -1415612.843555
EM: Round [78] log likelihood: -1415612.837138
EM: Round [79] log likelihood: -1415612.831002
EM: Round [80] log likelihood: -1415612.825133
EM: Round [81] log likelihood: -1415612.819519
EM: Round [82] log likelihood: -1415612.814147
EM: Round [83] log likelihood: -1415612.809005
EM: Round [84] log likelihood: -1415612.804083
EM: Round [85] log likelihood: -1415612.799370
EM: Round [86] log likelihood: -1415612.794856
EM: Round [87] log likelihood: -1415612.790533
EM: Round [88] log likelihood: -1415612.786390
EM: Round [89] log likelihood: -1415612.782421
EM: Round [90] log likelihood: -1415612.778617
EM: Round [91] log likelihood: -1415612.774970
EM: Round [92] log likelihood: -1415612.771473
EM: Round [93] log likelihood: -1415612.768119
EM: Round [94] log likelihood: -1415612.764903
EM: Round [95] log likelihood: -1415612.761817
EM: Round [96] log likelihood: -1415612.758857
EM: Round [97] log likelihood: -1415612.756015
EM: Round [98] log likelihood: -1415612.753288
EM: Round [99] log likelihood: -1415612.750670
EM: Round [100] log likelihood: -1415612.748157
EM: Round [101] log likelihood: -1415612.745743
EM: Round [102] log likelihood: -1415612.743424
EM: Round [103] log likelihood: -1415612.741197
EM: Round [104] log likelihood: -1415612.739058
EM: Round [105] log likelihood: -1415612.737001
EM: Round [106] log likelihood: -1415612.735025
EM: Round [107] log likelihood: -1415612.733126
EM: Round [108] log likelihood: -1415612.731300
EM: Round [109] log likelihood: -1415612.729544
EM: Round [110] log likelihood: -1415612.727856
EM: Round [111] log likelihood: -1415612.726232
EM: Round [112] log likelihood: -1415612.724670
EM: Round [113] log likelihood: -1415612.723168
EM: Round [114] log likelihood: -1415612.721722
EM: Round [115] log likelihood: -1415612.720331
EM: Round [116] log likelihood: -1415612.718992
EM: Round [117] log likelihood: -1415612.717703
EM: Round [118] log likelihood: -1415612.716462
EM: Round [119] log likelihood: -1415612.715268
EM: Round [120] log likelihood: -1415612.714117
EM: Round [121] log likelihood: -1415612.713010
EM: Round [122] log likelihood: -1415612.711942
EM: Round [123] log likelihood: -1415612.710915
EM: Round [124] log likelihood: -1415612.709924
EM: Round [125] log likelihood: -1415612.708970
EM: Round [126] log likelihood: -1415612.708051
EM: Round [127] log likelihood: -1415612.707164
EM: Round [128] log likelihood: -1415612.706310
EM: Round [129] log likelihood: -1415612.705487
EM: Round [130] log likelihood: -1415612.704693
EM: Round [131] log likelihood: -1415612.703927
EM: Round [132] log likelihood: -1415612.703189
EM: Round [133] log likelihood: -1415612.702477
EM: Round [134] log likelihood: -1415612.701791
EM: Round [135] log likelihood: -1415612.701128
EM: Round [136] log likelihood: -1415612.700489
EM: Round [137] log likelihood: -1415612.699873
EM: Round [138] log likelihood: -1415612.699278
EM: Round [139] log likelihood: -1415612.698704
EM: Round [140] log likelihood: -1415612.698150
EM: Round [141] log likelihood: -1415612.697615
EM: Round [142] log likelihood: -1415612.697098
EM: Round [143] log likelihood: -1415612.696600
EM: Round [144] log likelihood: -1415612.696118
EM: Round [145] log likelihood: -1415612.695654
EM: Round [146] log likelihood: -1415612.695205
EM: Round [147] log likelihood: -1415612.694771
EM: Round [148] log likelihood: -1415612.694353
EM: Round [149] log likelihood: -1415612.693948
EM: Round [150] log likelihood: -1415612.693557
EM: Round [151] log likelihood: -1415612.693180
EM: Round [152] log likelihood: -1415612.692815
EM: Round [153] log likelihood: -1415612.692462
EM: Round [154] log likelihood: -1415612.692121
EM: Round [155] log likelihood: -1415612.691792
EM: Round [156] log likelihood: -1415612.691474
EM: Round [157] log likelihood: -1415612.691166
EM: Round [158] log likelihood: -1415612.690869
EM: Round [159] log likelihood: -1415612.690581
EM: Round [160] log likelihood: -1415612.690303
EM: Round [161] log likelihood: -1415612.690034
EM: Round [162] log likelihood: -1415612.689774
EM: Round [163] log likelihood: -1415612.689522
EM: Round [164] log likelihood: -1415612.689279
EM: Round [165] log likelihood: -1415612.689043
EM: Round [166] log likelihood: -1415612.688816
EM: Round [167] log likelihood: -1415612.688595
EM: Round [168] log likelihood: -1415612.688382
EM: Round [169] log likelihood: -1415612.688176
EM: Round [170] log likelihood: -1415612.687976
EM: Round [171] log likelihood: -1415612.687783
EM: Round [172] log likelihood: -1415612.687596
EM: Round [173] log likelihood: -1415612.687415
EM: Round [174] log likelihood: -1415612.687240
EM: Round [175] log likelihood: -1415612.687070
EM: Round [176] log likelihood: -1415612.686906
EM: Round [177] log likelihood: -1415612.686747
EM: Round [178] log likelihood: -1415612.686593
EM: Round [179] log likelihood: -1415612.686444
EM: Round [180] log likelihood: -1415612.686299
EM: Round [181] log likelihood: -1415612.686160
EM: Round [182] log likelihood: -1415612.686024
EM: Round [183] log likelihood: -1415612.685893
EM: Round [184] log likelihood: -1415612.685766
EM: Round [185] log likelihood: -1415612.685643
EM: Round [186] log likelihood: -1415612.685524
EM: Round [187] log likelihood: -1415612.685408
EM: Round [188] log likelihood: -1415612.685296
EM: Round [189] log likelihood: -1415612.685188
EM: Round [190] log likelihood: -1415612.685083
EM: Round [191] log likelihood: -1415612.684981
EM: Round [192] log likelihood: -1415612.684882
EM: Stopping iterations at round 192 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.I3lIs64fuX/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.I3lIs64fuX/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.I3lIs64fuX/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 279832462 > /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.I3lIs64fuX/ctat_genome_lib_build_dir > /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.I3lIs64fuX/ctat_genome_lib_build_dir --annotate /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.I3lIs64fuX/ctat_genome_lib_build_dir
-done, see /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.I3lIs64fuX/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 1154, filtered: 8212)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.I3lIs64fuX/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.I3lIs64fuX/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000240498.9]
WARNING, no entry stored in dbm for [ENSG00000257403.2]
WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000210082.2]
WARNING, no entry stored in dbm for [ENSG00000234715.2]
WARNING, no entry stored in dbm for [ENSG00000128438.10]
WARNING, no entry stored in dbm for [ENSG00000230559.1]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000245958.6]
WARNING, no entry stored in dbm for [ENSG00000203413.3]
WARNING, no entry stored in dbm for [ENSG00000205534.6]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000272235.1]
WARNING, no entry stored in dbm for [ENSG00000205534.6]
WARNING, no entry stored in dbm for [ENSG00000251141.6]
WARNING, no entry stored in dbm for [ENSG00000204622.11]
WARNING, no entry stored in dbm for [ENSG00000235290.1]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000263883.1]
WARNING, no entry stored in dbm for [ENSG00000257403.2]
WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000225851.1]
WARNING, no entry stored in dbm for [ENSG00000281103.2]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000287411.1]
WARNING, no entry stored in dbm for [ENSG00000250221.1]
WARNING, no entry stored in dbm for [ENSG00000278975.1]
WARNING, no entry stored in dbm for [ENSG00000226377.2]
WARNING, no entry stored in dbm for [ENSG00000236360.2]
WARNING, no entry stored in dbm for [ENSG00000257074.3]
WARNING, no entry stored in dbm for [ENSG00000241030.1]
WARNING, no entry stored in dbm for [ENSG00000214807.2]
WARNING, no entry stored in dbm for [ENSG00000226703.1]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000276758.1]
WARNING, no entry stored in dbm for [ENSG00000251557.2]
WARNING, no entry stored in dbm for [ENSG00000226310.1]
WARNING, no entry stored in dbm for [ENSG00000265018.6]
WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000265936.1]
WARNING, no entry stored in dbm for [ENSG00000214259.3]
WARNING, no entry stored in dbm for [ENSG00000272693.4]
WARNING, no entry stored in dbm for [ENSG00000277458.1]
WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000225594.1]
WARNING, no entry stored in dbm for [ENSG00000269893.8]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000225851.1]
WARNING, no entry stored in dbm for [ENSG00000181984.11]
WARNING, no entry stored in dbm for [ENSG00000286694.1]
WARNING, no entry stored in dbm for [ENSG00000266042.1]
WARNING, no entry stored in dbm for [ENSG00000250802.7]
WARNING, no entry stored in dbm for [ENSG00000262445.3]
WARNING, no entry stored in dbm for [ENSG00000225292.2]
WARNING, no entry stored in dbm for [ENSG00000197149.5]
WARNING, no entry stored in dbm for [ENSG00000231607.13]
WARNING, no entry stored in dbm for [ENSG00000227681.5]
WARNING, no entry stored in dbm for [ENSG00000243730.2]
WARNING, no entry stored in dbm for [ENSG00000243744.2]
WARNING, no entry stored in dbm for [ENSG00000223727.6]
WARNING, no entry stored in dbm for [ENSG00000278834.1]
WARNING, no entry stored in dbm for [ENSG00000225159.1]
WARNING, no entry stored in dbm for [ENSG00000237445.2]
WARNING, no entry stored in dbm for [ENSG00000249328.3]
WARNING, no entry stored in dbm for [ENSG00000250507.1]
WARNING, no entry stored in dbm for [ENSG00000233930.4]
WARNING, no entry stored in dbm for [ENSG00000286948.1]
WARNING, no entry stored in dbm for [ENSG00000236679.2]
WARNING, no entry stored in dbm for [ENSG00000259228.1]
WARNING, no entry stored in dbm for [ENSG00000230267.7]
WARNING, no entry stored in dbm for [ENSG00000261054.1]
WARNING, no entry stored in dbm for [ENSG00000281896.1]
WARNING, no entry stored in dbm for [ENSG00000286458.1]
WARNING, no entry stored in dbm for [ENSG00000168405.17]
WARNING, no entry stored in dbm for [ENSG00000243389.1]
WARNING, no entry stored in dbm for [ENSG00000227619.3]
WARNING, no entry stored in dbm for [ENSG00000279821.1]
WARNING, no entry stored in dbm for [ENSG00000239268.3]
WARNING, no entry stored in dbm for [ENSG00000288620.1]
WARNING, no entry stored in dbm for [ENSG00000288620.1]
WARNING, no entry stored in dbm for [ENSG00000187953.10]
WARNING, no entry stored in dbm for [ENSG00000239985.2]
WARNING, no entry stored in dbm for [ENSG00000224365.1]
WARNING, no entry stored in dbm for [ENSG00000232386.9]
WARNING, no entry stored in dbm for [ENSG00000271018.1]
WARNING, no entry stored in dbm for [ENSG00000224237.1]
WARNING, no entry stored in dbm for [ENSG00000267469.1]
WARNING, no entry stored in dbm for [ENSG00000251211.1]
WARNING, no entry stored in dbm for [ENSG00000271121.2]
WARNING, no entry stored in dbm for [ENSG00000274642.1]
WARNING, no entry stored in dbm for [ENSG00000235352.1]
WARNING, no entry stored in dbm for [ENSG00000214514.8]
WARNING, no entry stored in dbm for [ENSG00000230189.7]
WARNING, no entry stored in dbm for [ENSG00000260010.1]
WARNING, no entry stored in dbm for [ENSG00000237149.5]
WARNING, no entry stored in dbm for [ENSG00000273541.1]
WARNING, no entry stored in dbm for [ENSG00000234420.7]
WARNING, no entry stored in dbm for [ENSG00000228436.3]
WARNING, no entry stored in dbm for [ENSG00000200972.1]
WARNING, no entry stored in dbm for [ENSG00000177410.13]
WARNING, no entry stored in dbm for [ENSG00000237036.5]
WARNING, no entry stored in dbm for [ENSG00000232491.1]
WARNING, no entry stored in dbm for [ENSG00000237417.1]
WARNING, no entry stored in dbm for [ENSG00000242329.1]
WARNING, no entry stored in dbm for [ENSG00000280296.1]
WARNING, no entry stored in dbm for [ENSG00000225292.2]
WARNING, no entry stored in dbm for [ENSG00000231290.6]
WARNING, no entry stored in dbm for [ENSG00000228485.1]
WARNING, no entry stored in dbm for [ENSG00000259972.3]
WARNING, no entry stored in dbm for [ENSG00000225022.1]
WARNING, no entry stored in dbm for [ENSG00000258901.2]
WARNING, no entry stored in dbm for [ENSG00000248049.7]
WARNING, no entry stored in dbm for [ENSG00000176912.5]
WARNING, no entry stored in dbm for [ENSG00000265000.1]
WARNING, no entry stored in dbm for [ENSG00000286581.1]
WARNING, no entry stored in dbm for [ENSG00000235782.1]
WARNING, no entry stored in dbm for [ENSG00000231324.1]
WARNING, no entry stored in dbm for [ENSG00000235211.4]
WARNING, no entry stored in dbm for [ENSG00000228499.1]
WARNING, no entry stored in dbm for [ENSG00000214558.4]
WARNING, no entry stored in dbm for [ENSG00000241014.2]
WARNING, no entry stored in dbm for [ENSG00000225728.2]
WARNING, no entry stored in dbm for [ENSG00000234336.7]
WARNING, no entry stored in dbm for [ENSG00000267390.1]
WARNING, no entry stored in dbm for [ENSG00000266904.6]
WARNING, no entry stored in dbm for [ENSG00000238217.6]
WARNING, no entry stored in dbm for [ENSG00000234996.4]
WARNING, no entry stored in dbm for [ENSG00000263873.1]
WARNING, no entry stored in dbm for [ENSG00000206573.9]
WARNING, no entry stored in dbm for [ENSG00000256591.5]
WARNING, no entry stored in dbm for [ENSG00000240549.2]
WARNING, no entry stored in dbm for [ENSG00000231064.7]
WARNING, no entry stored in dbm for [ENSG00000270141.3]
WARNING, no entry stored in dbm for [ENSG00000235043.3]
WARNING, no entry stored in dbm for [ENSG00000235043.3]
WARNING, no entry stored in dbm for [ENSG00000235043.3]
WARNING, no entry stored in dbm for [ENSG00000235043.3]
WARNING, no entry stored in dbm for [ENSG00000235043.3]
WARNING, no entry stored in dbm for [ENSG00000235043.3]
WARNING, no entry stored in dbm for [ENSG00000235043.3]
WARNING, no entry stored in dbm for [ENSG00000236184.1]
WARNING, no entry stored in dbm for [ENSG00000230409.3]
WARNING, no entry stored in dbm for [ENSG00000221953.5]
WARNING, no entry stored in dbm for [ENSG00000176124.15]
WARNING, no entry stored in dbm for [ENSG00000218359.1]
WARNING, no entry stored in dbm for [ENSG00000248755.1]
WARNING, no entry stored in dbm for [ENSG00000181984.11]
WARNING, no entry stored in dbm for [ENSG00000286694.1]
WARNING, no entry stored in dbm for [ENSG00000244265.2]
WARNING, no entry stored in dbm for [ENSG00000272168.8]
WARNING, no entry stored in dbm for [ENSG00000241316.8]
WARNING, no entry stored in dbm for [ENSG00000263070.1]
WARNING, no entry stored in dbm for [ENSG00000239224.3]
WARNING, no entry stored in dbm for [ENSG00000288543.1]
WARNING, no entry stored in dbm for [ENSG00000281903.2]
WARNING, no entry stored in dbm for [ENSG00000263821.1]
WARNING, no entry stored in dbm for [ENSG00000158482.10]
WARNING, no entry stored in dbm for [ENSG00000260735.2]
WARNING, no entry stored in dbm for [ENSG00000213082.3]
WARNING, no entry stored in dbm for [ENSG00000269893.8]
WARNING, no entry stored in dbm for [ENSG00000152117.17]
WARNING, no entry stored in dbm for [ENSG00000196085.5]
WARNING, no entry stored in dbm for [ENSG00000196085.5]
WARNING, no entry stored in dbm for [ENSG00000246465.1]
WARNING, no entry stored in dbm for [ENSG00000226421.1]
WARNING, no entry stored in dbm for [ENSG00000233860.2]
WARNING, no entry stored in dbm for [ENSG00000286788.1]
WARNING, no entry stored in dbm for [ENSG00000244627.5]
WARNING, no entry stored in dbm for [ENSG00000224281.5]
WARNING, no entry stored in dbm for [ENSG00000282572.2]
WARNING, no entry stored in dbm for [ENSG00000179918.19]
WARNING, no entry stored in dbm for [ENSG00000270989.1]
WARNING, no entry stored in dbm for [ENSG00000225648.5]
WARNING, no entry stored in dbm for [ENSG00000227681.5]
WARNING, no entry stored in dbm for [ENSG00000227681.5]
WARNING, no entry stored in dbm for [ENSG00000272030.1]
WARNING, no entry stored in dbm for [ENSG00000254534.1]
WARNING, no entry stored in dbm for [ENSG00000248124.8]
WARNING, no entry stored in dbm for [ENSG00000254166.3]
WARNING, no entry stored in dbm for [ENSG00000234851.4]
WARNING, no entry stored in dbm for [ENSG00000213553.4]
WARNING, no entry stored in dbm for [ENSG00000239559.2]
WARNING, no entry stored in dbm for [ENSG00000232858.1]
WARNING, no entry stored in dbm for [ENSG00000240328.1]
WARNING, no entry stored in dbm for [ENSG00000244229.1]
WARNING, no entry stored in dbm for [ENSG00000232145.1]
WARNING, no entry stored in dbm for [ENSG00000243141.2]
WARNING, no entry stored in dbm for [ENSG00000213753.11]
WARNING, no entry stored in dbm for [ENSG00000226658.1]
WARNING, no entry stored in dbm for [ENSG00000243964.1]
WARNING, no entry stored in dbm for [ENSG00000230508.1]
WARNING, no entry stored in dbm for [ENSG00000258869.1]
WARNING, no entry stored in dbm for [ENSG00000243824.1]
WARNING, no entry stored in dbm for [ENSG00000270865.1]
WARNING, no entry stored in dbm for [ENSG00000175170.16]
WARNING, no entry stored in dbm for [ENSG00000212856.6]
WARNING, no entry stored in dbm for [ENSG00000238247.2]
WARNING, no entry stored in dbm for [ENSG00000249937.8]
WARNING, no entry stored in dbm for [ENSG00000230556.1]
WARNING, no entry stored in dbm for [ENSG00000232160.7]
WARNING, no entry stored in dbm for [ENSG00000227080.2]
WARNING, no entry stored in dbm for [ENSG00000204253.4]
WARNING, no entry stored in dbm for [ENSG00000212719.13]
WARNING, no entry stored in dbm for [ENSG00000250842.1]
WARNING, no entry stored in dbm for [ENSG00000250848.1]
WARNING, no entry stored in dbm for [ENSG00000250900.6]
WARNING, no entry stored in dbm for [ENSG00000266179.2]
WARNING, no entry stored in dbm for [ENSG00000241057.2]
WARNING, no entry stored in dbm for [ENSG00000228546.2]
WARNING, no entry stored in dbm for [ENSG00000250778.1]
WARNING, no entry stored in dbm for [ENSG00000241573.1]
WARNING, no entry stored in dbm for [ENSG00000265038.1]
WARNING, no entry stored in dbm for [ENSG00000201628.1]
WARNING, no entry stored in dbm for [ENSG00000233703.1]
WARNING, no entry stored in dbm for [ENSG00000214100.8]
WARNING, no entry stored in dbm for [ENSG00000176349.11]
WARNING, no entry stored in dbm for [ENSG00000183458.14]
WARNING, no entry stored in dbm for [ENSG00000224280.1]
WARNING, no entry stored in dbm for [ENSG00000283230.1]
WARNING, no entry stored in dbm for [ENSG00000265480.5]
WARNING, no entry stored in dbm for [ENSG00000275131.3]
WARNING, no entry stored in dbm for [ENSG00000254539.1]
WARNING, no entry stored in dbm for [ENSG00000266179.2]
WARNING, no entry stored in dbm for [ENSG00000287492.1]
WARNING, no entry stored in dbm for [ENSG00000273344.1]
WARNING, no entry stored in dbm for [ENSG00000239883.8]
WARNING, no entry stored in dbm for [ENSG00000255240.6]
WARNING, no entry stored in dbm for [ENSG00000270455.1]
WARNING, no entry stored in dbm for [ENSG00000230673.3]
WARNING, no entry stored in dbm for [ENSG00000269352.1]
WARNING, no entry stored in dbm for [ENSG00000247556.6]
WARNING, no entry stored in dbm for [ENSG00000244720.1]
WARNING, no entry stored in dbm for [ENSG00000223705.9]
WARNING, no entry stored in dbm for [ENSG00000223705.9]
WARNING, no entry stored in dbm for [ENSG00000226232.8]
WARNING, no entry stored in dbm for [ENSG00000255185.6]
WARNING, no entry stored in dbm for [ENSG00000214433.4]
WARNING, no entry stored in dbm for [ENSG00000272145.1]
WARNING, no entry stored in dbm for [ENSG00000230516.1]
WARNING, no entry stored in dbm for [ENSG00000232578.4]
WARNING, no entry stored in dbm for [ENSG00000214955.5]
WARNING, no entry stored in dbm for [ENSG00000214955.5]
WARNING, no entry stored in dbm for [ENSG00000214955.5]
WARNING, no entry stored in dbm for [ENSG00000250251.6]
WARNING, no entry stored in dbm for [ENSG00000278390.5]
WARNING, no entry stored in dbm for [ENSG00000231154.1]
WARNING, no entry stored in dbm for [ENSG00000231154.1]
WARNING, no entry stored in dbm for [ENSG00000227154.4]
WARNING, no entry stored in dbm for [ENSG00000233325.3]
WARNING, no entry stored in dbm for [ENSG00000225783.8]
WARNING, no entry stored in dbm for [ENSG00000232442.1]
WARNING, no entry stored in dbm for [ENSG00000251019.1]
WARNING, no entry stored in dbm for [ENSG00000224328.1]
WARNING, no entry stored in dbm for [ENSG00000215424.10]
WARNING, no entry stored in dbm for [ENSG00000267605.7]
WARNING, no entry stored in dbm for [ENSG00000249478.1]
WARNING, no entry stored in dbm for [ENSG00000237603.1]
WARNING, no entry stored in dbm for [ENSG00000225689.2]
WARNING, no entry stored in dbm for [ENSG00000272933.1]
WARNING, no entry stored in dbm for [ENSG00000253204.1]
WARNING, no entry stored in dbm for [ENSG00000248323.7]
WARNING, no entry stored in dbm for [ENSG00000224546.2]
WARNING, no entry stored in dbm for [ENSG00000232527.8]
WARNING, no entry stored in dbm for [ENSG00000272779.1]
WARNING, no entry stored in dbm for [ENSG00000285737.1]
WARNING, no entry stored in dbm for [ENSG00000235645.2]
WARNING, no entry stored in dbm for [ENSG00000255618.2]
WARNING, no entry stored in dbm for [ENSG00000206187.4]
WARNING, no entry stored in dbm for [ENSG00000234663.7]
WARNING, no entry stored in dbm for [ENSG00000262468.6]
WARNING, no entry stored in dbm for [ENSG00000224017.2]
WARNING, no entry stored in dbm for [ENSG00000223823.1]
WARNING, no entry stored in dbm for [ENSG00000203999.9]
WARNING, no entry stored in dbm for [ENSG00000286433.1]
WARNING, no entry stored in dbm for [ENSG00000204054.14]
WARNING, no entry stored in dbm for [ENSG00000268658.5]
WARNING, no entry stored in dbm for [ENSG00000261824.7]
WARNING, no entry stored in dbm for [ENSG00000227036.8]
WARNING, no entry stored in dbm for [ENSG00000213970.4]
WARNING, no entry stored in dbm for [ENSG00000232117.2]
WARNING, no entry stored in dbm for [ENSG00000231329.8]
WARNING, no entry stored in dbm for [ENSG00000237854.3]
WARNING, no entry stored in dbm for [ENSG00000260005.6]
WARNING, no entry stored in dbm for [ENSG00000233930.4]
WARNING, no entry stored in dbm for [ENSG00000286948.1]
WARNING, no entry stored in dbm for [ENSG00000170629.14]
WARNING, no entry stored in dbm for [ENSG00000244879.8]
WARNING, no entry stored in dbm for [ENSG00000286245.1]
WARNING, no entry stored in dbm for [ENSG00000233652.1]
WARNING, no entry stored in dbm for [ENSG00000227827.3]
WARNING, no entry stored in dbm for [ENSG00000237978.6]
WARNING, no entry stored in dbm for [ENSG00000272933.1]
WARNING, no entry stored in dbm for [ENSG00000222042.2]
WARNING, no entry stored in dbm for [ENSG00000235257.9]
WARNING, no entry stored in dbm for [ENSG00000127589.4]
WARNING, no entry stored in dbm for [ENSG00000225206.10]
WARNING, no entry stored in dbm for [ENSG00000202422.1]
WARNING, no entry stored in dbm for [ENSG00000285219.2]
WARNING, no entry stored in dbm for [ENSG00000166104.15]
WARNING, no entry stored in dbm for [ENSG00000230148.8]
WARNING, no entry stored in dbm for [ENSG00000228653.2]
WARNING, no entry stored in dbm for [ENSG00000213305.3]
WARNING, no entry stored in dbm for [ENSG00000287168.1]
WARNING, no entry stored in dbm for [ENSG00000227133.1]
WARNING, no entry stored in dbm for [ENSG00000233299.1]
WARNING, no entry stored in dbm for [ENSG00000228789.8]
WARNING, no entry stored in dbm for [ENSG00000228223.3]
WARNING, no entry stored in dbm for [ENSG00000260693.1]
WARNING, no entry stored in dbm for [ENSG00000261716.2]
WARNING, no entry stored in dbm for [ENSG00000261716.2]
WARNING, no entry stored in dbm for [ENSG00000220323.4]
WARNING, no entry stored in dbm for [ENSG00000220323.4]
WARNING, no entry stored in dbm for [ENSG00000245322.7]
WARNING, no entry stored in dbm for [ENSG00000226259.10]
WARNING, no entry stored in dbm for [ENSG00000241621.1]
WARNING, no entry stored in dbm for [ENSG00000229656.7]
WARNING, no entry stored in dbm for [ENSG00000166104.15]
WARNING, no entry stored in dbm for [ENSG00000166104.15]
WARNING, no entry stored in dbm for [ENSG00000250903.9]
WARNING, no entry stored in dbm for [ENSG00000281649.2]
WARNING, no entry stored in dbm for [ENSG00000249129.1]
WARNING, no entry stored in dbm for [ENSG00000250221.1]
WARNING, no entry stored in dbm for [ENSG00000276291.5]
WARNING, no entry stored in dbm for [ENSG00000233230.1]
WARNING, no entry stored in dbm for [ENSG00000233708.1]
WARNING, no entry stored in dbm for [ENSG00000231528.3]
WARNING, no entry stored in dbm for [ENSG00000257621.8]
WARNING, no entry stored in dbm for [ENSG00000214439.4]
WARNING, no entry stored in dbm for [ENSG00000273018.7]
WARNING, no entry stored in dbm for [ENSG00000225393.1]
WARNING, no entry stored in dbm for [ENSG00000224216.1]
WARNING, no entry stored in dbm for [ENSG00000270344.3]
WARNING, no entry stored in dbm for [ENSG00000285517.1]
WARNING, no entry stored in dbm for [ENSG00000225807.2]
WARNING, no entry stored in dbm for [ENSG00000179523.5]
WARNING, no entry stored in dbm for [ENSG00000236698.1]
WARNING, no entry stored in dbm for [ENSG00000177788.6]
WARNING, no entry stored in dbm for [ENSG00000236290.1]
WARNING, no entry stored in dbm for [ENSG00000186676.3]
WARNING, no entry stored in dbm for [ENSG00000263883.1]
WARNING, no entry stored in dbm for [ENSG00000261963.3]
WARNING, no entry stored in dbm for [ENSG00000267586.7]
WARNING, no entry stored in dbm for [ENSG00000257612.2]
WARNING, no entry stored in dbm for [ENSG00000269902.1]
WARNING, no entry stored in dbm for [ENSG00000259577.2]
WARNING, no entry stored in dbm for [ENSG00000235244.4]
WARNING, no entry stored in dbm for [ENSG00000278878.1]
WARNING, no entry stored in dbm for [ENSG00000276077.4]
WARNING, no entry stored in dbm for [ENSG00000230013.2]
WARNING, no entry stored in dbm for [ENSG00000248441.7]
WARNING, no entry stored in dbm for [ENSG00000207007.1]
WARNING, no entry stored in dbm for [ENSG00000207007.1]
WARNING, no entry stored in dbm for [ENSG00000207007.1]
WARNING, no entry stored in dbm for [ENSG00000274461.2]
WARNING, no entry stored in dbm for [ENSG00000235615.2]
WARNING, no entry stored in dbm for [ENSG00000179253.3]
WARNING, no entry stored in dbm for [ENSG00000177993.3]
WARNING, no entry stored in dbm for [ENSG00000232124.3]
WARNING, no entry stored in dbm for [ENSG00000225393.1]
WARNING, no entry stored in dbm for [ENSG00000224216.1]
WARNING, no entry stored in dbm for [ENSG00000234842.1]
WARNING, no entry stored in dbm for [ENSG00000228395.2]
WARNING, no entry stored in dbm for [ENSG00000223773.7]
WARNING, no entry stored in dbm for [ENSG00000215457.5]
WARNING, no entry stored in dbm for [ENSG00000223745.8]
WARNING, no entry stored in dbm for [ENSG00000236830.7]
WARNING, no entry stored in dbm for [ENSG00000236830.7]
WARNING, no entry stored in dbm for [ENSG00000239521.9]
WARNING, no entry stored in dbm for [ENSG00000234210.1]
WARNING, no entry stored in dbm for [ENSG00000234912.12]
WARNING, no entry stored in dbm for [ENSG00000167747.15]
WARNING, no entry stored in dbm for [ENSG00000283453.2]
WARNING, no entry stored in dbm for [ENSG00000286156.1]
WARNING, no entry stored in dbm for [ENSG00000254560.6]
WARNING, no entry stored in dbm for [ENSG00000197595.4]
WARNING, no entry stored in dbm for [ENSG00000244198.7]
WARNING, no entry stored in dbm for [ENSG00000254590.1]
WARNING, no entry stored in dbm for [ENSG00000196312.15]
WARNING, no entry stored in dbm for [ENSG00000256591.5]
WARNING, no entry stored in dbm for [ENSG00000248409.2]
WARNING, no entry stored in dbm for [ENSG00000255856.2]
WARNING, no entry stored in dbm for [ENSG00000223784.2]
WARNING, no entry stored in dbm for [ENSG00000230006.7]
WARNING, no entry stored in dbm for [ENSG00000230006.7]
WARNING, no entry stored in dbm for [ENSG00000239883.8]
WARNING, no entry stored in dbm for [ENSG00000232217.1]
WARNING, no entry stored in dbm for [ENSG00000234712.1]
WARNING, no entry stored in dbm for [ENSG00000270094.1]
WARNING, no entry stored in dbm for [ENSG00000286270.2]
WARNING, no entry stored in dbm for [ENSG00000282843.1]
WARNING, no entry stored in dbm for [ENSG00000287040.1]
WARNING, no entry stored in dbm for [ENSG00000170161.7]
WARNING, no entry stored in dbm for [ENSG00000279321.1]
WARNING, no entry stored in dbm for [ENSG00000285280.2]
WARNING, no entry stored in dbm for [ENSG00000235582.2]
WARNING, no entry stored in dbm for [ENSG00000215016.2]
WARNING, no entry stored in dbm for [ENSG00000233967.7]
WARNING, no entry stored in dbm for [ENSG00000231416.1]
WARNING, no entry stored in dbm for [ENSG00000240509.1]
WARNING, no entry stored in dbm for [ENSG00000228838.1]
WARNING, no entry stored in dbm for [ENSG00000287437.1]
WARNING, no entry stored in dbm for [ENSG00000236986.6]
WARNING, no entry stored in dbm for [ENSG00000227537.1]
WARNING, no entry stored in dbm for [ENSG00000284966.3]
WARNING, no entry stored in dbm for [ENSG00000287754.1]
WARNING, no entry stored in dbm for [ENSG00000233558.1]
WARNING, no entry stored in dbm for [ENSG00000220105.2]
WARNING, no entry stored in dbm for [ENSG00000269940.1]
WARNING, no entry stored in dbm for [ENSG00000275131.3]
WARNING, no entry stored in dbm for [ENSG00000258646.1]
WARNING, no entry stored in dbm for [ENSG00000263535.2]
WARNING, no entry stored in dbm for [ENSG00000173209.23]
WARNING, no entry stored in dbm for [ENSG00000226558.1]
WARNING, no entry stored in dbm for [ENSG00000243916.1]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000177173.5]
WARNING, no entry stored in dbm for [ENSG00000238039.1]
WARNING, no entry stored in dbm for [ENSG00000228818.1]
WARNING, no entry stored in dbm for [ENSG00000261499.2]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000286830.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000286830.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000214243.3]
WARNING, no entry stored in dbm for [ENSG00000279162.1]
WARNING, no entry stored in dbm for [ENSG00000215158.9]
WARNING, no entry stored in dbm for [ENSG00000215190.9]
WARNING, no entry stored in dbm for [ENSG00000229930.1]
WARNING, no entry stored in dbm for [ENSG00000287567.1]
WARNING, no entry stored in dbm for [ENSG00000243655.2]
WARNING, no entry stored in dbm for [ENSG00000280193.1]
WARNING, no entry stored in dbm for [ENSG00000257910.1]
WARNING, no entry stored in dbm for [ENSG00000205041.1]
WARNING, no entry stored in dbm for [ENSG00000287534.1]
WARNING, no entry stored in dbm for [ENSG00000288075.1]
WARNING, no entry stored in dbm for [ENSG00000180764.13]
WARNING, no entry stored in dbm for [ENSG00000249951.1]
WARNING, no entry stored in dbm for [ENSG00000287239.1]
WARNING, no entry stored in dbm for [ENSG00000254153.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000226945.1]
WARNING, no entry stored in dbm for [ENSG00000287676.1]
WARNING, no entry stored in dbm for [ENSG00000243830.2]
WARNING, no entry stored in dbm for [ENSG00000266931.2]
WARNING, no entry stored in dbm for [ENSG00000286545.1]
WARNING, no entry stored in dbm for [ENSG00000250539.1]
WARNING, no entry stored in dbm for [ENSG00000241846.1]
WARNING, no entry stored in dbm for [ENSG00000226580.1]
WARNING, no entry stored in dbm for [ENSG00000267458.1]
WARNING, no entry stored in dbm for [ENSG00000288620.1]
WARNING, no entry stored in dbm for [ENSG00000248126.1]
WARNING, no entry stored in dbm for [ENSG00000254400.1]
WARNING, no entry stored in dbm for [ENSG00000261519.3]
WARNING, no entry stored in dbm for [ENSG00000259418.1]
WARNING, no entry stored in dbm for [ENSG00000253553.7]
WARNING, no entry stored in dbm for [ENSG00000264151.6]
WARNING, no entry stored in dbm for [ENSG00000279259.1]
WARNING, no entry stored in dbm for [ENSG00000277654.6]
WARNING, no entry stored in dbm for [ENSG00000285906.2]
WARNING, no entry stored in dbm for [ENSG00000241889.1]
WARNING, no entry stored in dbm for [ENSG00000269274.1]
WARNING, no entry stored in dbm for [ENSG00000269373.1]
WARNING, no entry stored in dbm for [ENSG00000234072.1]
WARNING, no entry stored in dbm for [ENSG00000271848.2]
WARNING, no entry stored in dbm for [ENSG00000228649.9]
WARNING, no entry stored in dbm for [ENSG00000239985.2]
WARNING, no entry stored in dbm for [ENSG00000259299.1]
WARNING, no entry stored in dbm for [ENSG00000268531.3]
WARNING, no entry stored in dbm for [ENSG00000229212.8]
WARNING, no entry stored in dbm for [ENSG00000188002.10]
WARNING, no entry stored in dbm for [ENSG00000248569.1]
WARNING, no entry stored in dbm for [ENSG00000279392.1]
WARNING, no entry stored in dbm for [ENSG00000254485.5]
WARNING, no entry stored in dbm for [ENSG00000279035.1]
WARNING, no entry stored in dbm for [ENSG00000264281.3]
WARNING, no entry stored in dbm for [ENSG00000272800.3]
WARNING, no entry stored in dbm for [ENSG00000272267.2]
WARNING, no entry stored in dbm for [ENSG00000267735.1]
WARNING, no entry stored in dbm for [ENSG00000255886.1]
WARNING, no entry stored in dbm for [ENSG00000259394.2]
WARNING, no entry stored in dbm for [ENSG00000287306.1]
WARNING, no entry stored in dbm for [ENSG00000285857.1]
WARNING, no entry stored in dbm for [ENSG00000232386.9]
WARNING, no entry stored in dbm for [ENSG00000186148.13]
WARNING, no entry stored in dbm for [ENSG00000213293.4]
WARNING, no entry stored in dbm for [ENSG00000214748.2]
WARNING, no entry stored in dbm for [ENSG00000249839.1]
WARNING, no entry stored in dbm for [ENSG00000277369.1]
WARNING, no entry stored in dbm for [ENSG00000283103.3]
WARNING, no entry stored in dbm for [ENSG00000267801.1]
WARNING, no entry stored in dbm for [ENSG00000226400.2]
WARNING, no entry stored in dbm for [ENSG00000276868.1]
WARNING, no entry stored in dbm for [ENSG00000216895.9]
WARNING, no entry stored in dbm for [ENSG00000254170.1]
WARNING, no entry stored in dbm for [ENSG00000237875.1]
WARNING, no entry stored in dbm for [ENSG00000287611.1]
WARNING, no entry stored in dbm for [ENSG00000260329.1]
WARNING, no entry stored in dbm for [ENSG00000271955.2]
WARNING, no entry stored in dbm for [ENSG00000263345.1]
WARNING, no entry stored in dbm for [ENSG00000229180.7]
WARNING, no entry stored in dbm for [ENSG00000267469.1]
WARNING, no entry stored in dbm for [ENSG00000273314.1]
WARNING, no entry stored in dbm for [ENSG00000283662.1]
WARNING, no entry stored in dbm for [ENSG00000243004.6]
WARNING, no entry stored in dbm for [ENSG00000279601.1]
WARNING, no entry stored in dbm for [ENSG00000214243.3]
WARNING, no entry stored in dbm for [ENSG00000214870.9]
WARNING, no entry stored in dbm for [ENSG00000251259.1]
WARNING, no entry stored in dbm for [ENSG00000204622.11]


	* STAR-Fusion complete.  See output: /tmp/nxf.I3lIs64fuX/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)