Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/84900063d864f0855f76846c7eee3c/1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/ca4d20e41802bc8c33ea65523f74cb/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/e21f94ce575157d7e354031f7b4e60/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/e21f94ce575157d7e354031f7b4e60/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/4ae57a790d79b95a1c08daa9f95515/1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 266979152
[W::hts_idx_load3] The index file is older than the data file: 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	266979152
Known Splicing Events:	264815484
Partial Novel Splicing Events:	1310441
Novel Splicing Events:	760409
Filtered Splicing Events:	92818

Total splicing  Junctions:	457863
Known Splicing Junctions:	255781
Partial Novel Splicing Junctions:	120320
Novel Splicing Junctions:	81762

===================================================================
Create BED file ...
Create Interact file ...