File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/63c429ab9bd5269aeb916e648f7e1c/.command.log
Size
4.7 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-fe242a7f-c5b9-4d3f-88fa-f3e739280d3a/45/503758169673f6b79761b4db9d3b84/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/63c429ab9bd5269aeb916e648f7e1c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/63c429ab9bd5269aeb916e648f7e1c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/7bc3083e98189c934ce121edc71876/1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/95693464a271bba884132e5576e406/1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
NKD1--AC138904.1
starfusion
arriba
NKD1--CARHSP1
starfusion
arriba
SUPV3L1--SPIDR
starfusion
arriba
BOLA2--AC025279.2
starfusion
arriba
ADCY9--AC007610.5
starfusion
arriba
TLK2P1--AC110079.1
starfusion
AP1B1--GPAT4
starfusion
arriba
SLC7A5P1--N4BP1
starfusion
arriba
AC135050.3--SMG1P4
starfusion
ARHGAP21--TBC1D22A
starfusion
arriba
LINC00381--NKAIN2
starfusion
GUCY1B2--NKAIN2
starfusion
ZNF668--BCL7C
starfusion
STX16--NPEPL1
starfusion
arriba
NKD1--AC022167.4
arriba
NKD1--LITAFD
arriba
TVP23C--CDRT4
arriba
ADCY9--MSRB1
arriba

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Processing NKD1--AC138904.1:   0%|          | 0/18 [00:00<?, ?it/s]
Processing NKD1--AC138904.1:   6%|▌         | 1/18 [00:00<00:01,  9.25it/s]
Processing NKD1--CARHSP1:   6%|▌         | 1/18 [00:00<00:01,  9.25it/s]   
Processing NKD1--CARHSP1:  11%|█         | 2/18 [00:00<00:01,  9.48it/s]
Processing SUPV3L1--SPIDR:  11%|█         | 2/18 [00:00<00:01,  9.48it/s]
Processing SUPV3L1--SPIDR:  17%|█▋        | 3/18 [00:00<00:01,  9.55it/s]
Processing BOLA2--AC025279.2:  17%|█▋        | 3/18 [00:00<00:01,  9.55it/s]
Processing BOLA2--AC025279.2:  22%|██▏       | 4/18 [00:00<00:01,  9.59it/s]
Processing ADCY9--AC007610.5:  22%|██▏       | 4/18 [00:00<00:01,  9.59it/s]
Processing ADCY9--AC007610.5:  28%|██▊       | 5/18 [00:00<00:01,  9.61it/s]
Processing TLK2P1--AC110079.1:  28%|██▊       | 5/18 [00:00<00:01,  9.61it/s]
Processing TLK2P1--AC110079.1:  33%|███▎      | 6/18 [00:00<00:01,  9.62it/s]
Processing AP1B1--GPAT4:  33%|███▎      | 6/18 [00:00<00:01,  9.62it/s]      
Processing AP1B1--GPAT4:  39%|███▉      | 7/18 [00:00<00:01,  9.62it/s]
Processing SLC7A5P1--N4BP1:  39%|███▉      | 7/18 [00:00<00:01,  9.62it/s]
Processing SLC7A5P1--N4BP1:  44%|████▍     | 8/18 [00:00<00:01,  9.63it/s]
Processing AC135050.3--SMG1P4:  44%|████▍     | 8/18 [00:00<00:01,  9.63it/s]
Processing AC135050.3--SMG1P4:  50%|█████     | 9/18 [00:00<00:00,  9.63it/s]
Processing ARHGAP21--TBC1D22A:  50%|█████     | 9/18 [00:00<00:00,  9.63it/s]
Processing ARHGAP21--TBC1D22A:  56%|█████▌    | 10/18 [00:01<00:00,  9.64it/s]
Processing LINC00381--NKAIN2:  56%|█████▌    | 10/18 [00:01<00:00,  9.64it/s] 
Processing LINC00381--NKAIN2:  61%|██████    | 11/18 [00:01<00:00,  9.64it/s]
Processing GUCY1B2--NKAIN2:  61%|██████    | 11/18 [00:01<00:00,  9.64it/s]  
Processing GUCY1B2--NKAIN2:  67%|██████▋   | 12/18 [00:01<00:00,  9.64it/s]
Processing ZNF668--BCL7C:  67%|██████▋   | 12/18 [00:01<00:00,  9.64it/s]  
Processing ZNF668--BCL7C:  72%|███████▏  | 13/18 [00:01<00:00,  9.64it/s]
Processing STX16--NPEPL1:  72%|███████▏  | 13/18 [00:01<00:00,  9.64it/s]
Processing STX16--NPEPL1:  78%|███████▊  | 14/18 [00:01<00:00,  9.64it/s]
Processing NKD1--AC022167.4:  78%|███████▊  | 14/18 [00:01<00:00,  9.64it/s]
Processing NKD1--AC022167.4:  83%|████████▎ | 15/18 [00:01<00:00,  9.64it/s]
Processing NKD1--LITAFD:  83%|████████▎ | 15/18 [00:01<00:00,  9.64it/s]    
Processing NKD1--LITAFD:  89%|████████▉ | 16/18 [00:01<00:00,  9.64it/s]
Processing TVP23C--CDRT4:  89%|████████▉ | 16/18 [00:01<00:00,  9.64it/s]
Processing TVP23C--CDRT4:  94%|█████████▍| 17/18 [00:01<00:00,  9.64it/s]
Processing ADCY9--MSRB1:  94%|█████████▍| 17/18 [00:01<00:00,  9.64it/s] 
Processing ADCY9--MSRB1: 100%|██████████| 18/18 [00:01<00:00,  9.64it/s]
Processing ADCY9--MSRB1: 100%|██████████| 18/18 [00:01<00:00,  9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory