Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/a0b426b63277188e8ef51bd02c500f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/bfe1b1eae8d92a160221a72fd9d493/1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/a0b426b63277188e8ef51bd02c500f/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 291514237
unpaired = 5606861
MERGED PAIRED END READS = 291514237
MATES PROCESSED = 588635335
TOTAL READS     = 297121098
DISTINCT READS  = 9.18489e+07
DISTINCT COUNTS = 1424
MAX COUNT       = 1290909
COUNTS OF 1     = 3.57576e+07
MAX TERMS       = 100
OBSERVED COUNTS (1290910)
1	35757582
2	20821510
3	12551558
4	7538835
5	4589390
6	2871484
7	1863743
8	1259319
9	886793
10	645605
11	484898
12	373827
13	293538
14	235430
15	191659
16	158435
17	131874
18	112254
19	95905
20	83138
21	72177
22	62828
23	55533
24	49848
25	43830
26	39351
27	35432
28	32319
29	29362
30	26616
31	24031
32	22214
33	20188
34	18899
35	17530
36	16106
37	14977
38	13966
39	12939
40	12103
41	11395
42	10705
43	10184
44	9251
45	8866
46	8216
47	7872
48	7249
49	6973
50	6725
51	6252
52	5944
53	5736
54	5392
55	5191
56	4941
57	4672
58	4675
59	4285
60	4206
61	3976
62	3686
63	3525
64	3391
65	3224
66	3221
67	3078
68	2962
69	2807
70	2659
71	2680
72	2431
73	2372
74	2351
75	2261
76	2153
77	2121
78	2052
79	1953
80	1867
81	1839
82	1745
83	1715
84	1776
85	1598
86	1535
87	1554
88	1463
89	1404
90	1361
91	1298
92	1259
93	1283
94	1223
95	1252
96	1166
97	1150
98	1089
99	1101
100	1071
101	1022
102	975
103	1028
104	924
105	881
106	927
107	849
108	900
109	851
110	842
111	833
112	717
113	830
114	756
115	704
116	687
117	632
118	645
119	677
120	639
121	617
122	593
123	633
124	625
125	607
126	564
127	554
128	531
129	503
130	506
131	508
132	472
133	535
134	436
135	471
136	472
137	467
138	456
139	416
140	456
141	402
142	392
143	399
144	395
145	399
146	380
147	362
148	413
149	374
150	354
151	340
152	331
153	338
154	341
155	328
156	338
157	324
158	294
159	333
160	294
161	294
162	299
163	271
164	280
165	291
166	293
167	245
168	271
169	268
170	253
171	236
172	254
173	208
174	222
175	239
176	241
177	222
178	215
179	229
180	231
181	234
182	201
183	193
184	182
185	198
186	188
187	186
188	182
189	181
190	208
191	180
192	169
193	189
194	185
195	158
196	166
197	173
198	165
199	187
200	195
201	157
202	159
203	168
204	178
205	146
206	135
207	176
208	147
209	154
210	139
211	127
212	129
213	136
214	127
215	137
216	133
217	149
218	134
219	138
220	143
221	135
222	132
223	151
224	117
225	116
226	130
227	112
228	105
229	118
230	124
231	107
232	110
233	111
234	146
235	105
236	94
237	115
238	103
239	111
240	89
241	109
242	95
243	97
244	82
245	111
246	116
247	87
248	99
249	89
250	74
251	83
252	72
253	74
254	91
255	82
256	97
257	81
258	67
259	100
260	84
261	74
262	61
263	71
264	75
265	101
266	85
267	76
268	68
269	63
270	66
271	67
272	81
273	78
274	56
275	71
276	59
277	71
278	54
279	59
280	64
281	74
282	63
283	51
284	78
285	63
286	72
287	64
288	59
289	80
290	61
291	52
292	52
293	65
294	55
295	65
296	57
297	63
298	50
299	47
300	49
301	60
302	59
303	49
304	53
305	52
306	46
307	41
308	50
309	44
310	43
311	43
312	51
313	37
314	53
315	53
316	44
317	53
318	41
319	57
320	31
321	37
322	52
323	44
324	56
325	30
326	40
327	43
328	36
329	44
330	37
331	46
332	49
333	27
334	40
335	40
336	37
337	51
338	42
339	43
340	44
341	33
342	41
343	36
344	28
345	43
346	35
347	37
348	33
349	40
350	39
351	25
352	22
353	44
354	36
355	35
356	31
357	30
358	27
359	24
360	31
361	30
362	25
363	27
364	34
365	36
366	31
367	26
368	32
369	37
370	35
371	24
372	37
373	36
374	29
375	32
376	29
377	28
378	23
379	43
380	33
381	23
382	27
383	30
384	37
385	23
386	27
387	26
388	29
389	17
390	29
391	25
392	28
393	26
394	33
395	20
396	29
397	15
398	31
399	25
400	22
401	19
402	20
403	31
404	15
405	27
406	20
407	25
408	22
409	29
410	25
411	20
412	20
413	16
414	23
415	19
416	21
417	30
418	12
419	13
420	22
421	24
422	20
423	17
424	22
425	20
426	25
427	22
428	17
429	16
430	21
431	15
432	24
433	11
434	22
435	29
436	25
437	18
438	20
439	13
440	13
441	19
442	15
443	18
444	11
445	14
446	21
447	13
448	23
449	21
450	18
451	16
452	22
453	24
454	16
455	16
456	14
457	15
458	13
459	11
460	24
461	15
462	23
463	26
464	10
465	15
466	7
467	12
468	14
469	13
470	14
471	13
472	19
473	24
474	14
475	15
476	7
477	20
478	10
479	13
480	6
481	16
482	24
483	13
484	15
485	12
486	16
487	14
488	19
489	9
490	15
491	17
492	7
493	13
494	19
495	8
496	19
497	11
498	13
499	14
500	12
501	11
502	9
503	12
504	16
505	10
506	16
507	15
508	15
509	12
510	17
511	10
512	7
513	10
514	12
515	9
516	16
517	7
518	7
519	10
520	7
521	12
522	14
523	11
524	11
525	7
526	11
527	7
528	10
529	10
530	5
531	6
532	6
533	16
534	10
535	10
536	11
537	14
538	8
539	8
540	9
541	15
542	9
543	9
544	6
545	7
546	8
547	12
548	15
549	1
550	10
551	7
552	6
553	16
554	6
555	7
556	8
557	12
558	5
559	10
560	7
561	12
562	14
563	10
564	5
565	8
566	10
567	8
568	6
569	8
570	6
571	13
572	9
573	7
574	6
575	6
576	5
577	6
578	11
579	9
580	3
581	7
582	6
583	6
584	6
585	10
586	10
587	6
588	8
589	4
590	4
591	10
592	9
593	7
594	10
595	6
596	8
597	7
598	6
599	13
600	7
601	8
602	6
603	5
604	5
605	9
606	11
607	8
608	4
609	5
610	5
611	8
612	4
613	4
614	8
615	11
616	8
617	8
618	7
619	11
620	7
621	9
622	8
623	6
624	2
625	3
626	7
627	13
628	6
629	6
630	5
631	5
632	10
633	6
634	11
635	3
636	4
637	8
638	2
639	7
640	5
641	6
642	7
643	6
644	5
645	7
646	7
647	8
648	6
649	3
650	7
651	5
652	9
653	2
654	5
655	8
656	4
657	7
658	6
659	7
660	6
661	7
662	4
663	7
664	4
665	5
666	8
667	5
668	7
669	3
670	8
671	9
672	12
673	11
674	6
675	6
676	4
677	4
678	1
679	4
680	5
681	7
682	4
683	3
684	3
685	4
686	1
687	8
688	5
689	9
690	2
691	5
692	2
693	6
694	2
695	1
696	4
697	7
698	6
699	10
700	6
701	8
702	8
703	1
704	3
705	7
706	3
707	1
708	4
709	2
710	7
711	1
712	5
713	2
714	2
715	2
716	4
717	5
718	3
719	3
720	2
721	4
722	4
723	5
724	6
725	1
726	4
727	4
728	4
729	3
730	8
731	8
732	8
733	4
734	1
735	8
736	4
737	3
738	6
739	2
740	4
741	3
742	2
743	4
744	4
745	3
746	3
747	2
748	4
749	1
750	5
751	3
752	3
753	3
754	1
755	3
756	5
757	5
758	5
759	2
760	5
761	3
762	3
763	2
764	1
765	6
766	2
767	3
768	4
769	7
770	1
771	2
772	3
773	3
774	2
775	3
776	7
777	4
778	4
779	2
780	6
781	4
782	2
783	3
784	2
785	2
786	3
787	2
788	1
789	3
790	2
791	5
792	5
793	3
794	3
795	5
796	5
797	3
798	3
799	1
801	3
802	5
803	1
804	3
805	2
806	3
807	4
808	4
809	2
810	3
811	4
812	2
813	3
814	3
815	2
816	3
818	5
819	1
820	4
821	2
823	1
824	2
825	3
826	2
827	1
829	4
830	3
831	2
832	2
833	1
835	1
836	3
837	5
838	2
839	3
840	4
841	6
842	2
843	1
844	4
845	3
846	4
847	3
848	2
849	2
850	1
851	2
852	4
853	2
854	4
855	2
856	1
857	2
858	4
859	1
860	2
861	3
862	3
863	1
864	1
866	3
867	5
868	3
869	3
870	2
871	5
872	2
873	1
874	3
875	2
877	2
878	2
879	3
880	4
881	3
883	3
884	1
885	2
886	3
887	2
888	1
889	3
890	3
891	3
892	1
893	2
894	3
895	1
896	3
897	3
898	1
899	2
900	5
901	1
903	4
904	2
905	5
906	4
907	1
908	1
910	3
911	1
912	2
913	2
914	2
915	4
916	2
917	1
918	3
919	3
920	2
921	1
922	1
923	2
925	1
926	2
927	2
928	6
930	1
931	2
932	3
933	3
934	3
935	1
936	3
937	1
939	3
940	3
941	5
942	4
944	1
947	1
948	1
949	2
950	2
951	1
952	2
953	1
954	1
955	2
958	4
959	1
961	1
962	1
965	2
967	1
968	3
969	3
970	4
975	4
977	2
978	1
979	2
980	1
981	3
982	2
983	2
985	1
988	3
990	1
993	4
994	1
995	2
996	2
997	1
998	1
999	1
1000	1
1001	4
1002	1
1004	1
1006	2
1008	1
1009	2
1011	1
1012	1
1014	4
1015	2
1017	3
1018	2
1019	2
1020	1
1021	2
1023	2
1024	2
1025	1
1027	2
1028	1
1029	1
1030	2
1031	1
1032	3
1033	2
1034	2
1035	1
1036	1
1037	2
1038	1
1039	2
1040	2
1041	2
1042	2
1043	1
1046	1
1049	1
1050	1
1051	3
1052	1
1053	1
1054	1
1055	2
1056	2
1058	2
1059	2
1060	4
1061	1
1062	2
1063	1
1064	2
1065	1
1066	1
1067	1
1068	1
1069	2
1070	2
1071	1
1072	3
1073	3
1074	1
1076	3
1077	2
1078	2
1081	4
1082	4
1083	1
1086	2
1087	4
1088	3
1089	3
1090	1
1096	1
1099	2
1100	3
1101	2
1102	1
1104	1
1108	1
1109	1
1111	1
1112	2
1115	1
1117	2
1119	2
1120	3
1121	1
1123	1
1124	2
1125	1
1126	1
1127	1
1129	2
1132	1
1133	1
1134	2
1135	1
1137	1
1138	1
1140	1
1141	1
1143	2
1146	2
1148	1
1149	2
1151	1
1153	3
1154	1
1155	4
1156	2
1161	1
1162	1
1163	1
1164	3
1165	1
1166	1
1167	3
1168	1
1169	3
1170	1
1172	1
1174	2
1175	1
1178	4
1181	3
1182	1
1183	1
1187	2
1188	1
1189	1
1190	2
1191	1
1192	1
1194	1
1196	2
1198	2
1199	1
1203	1
1204	1
1207	1
1210	1
1211	1
1215	2
1217	2
1220	1
1221	1
1222	1
1224	1
1227	1
1231	1
1232	1
1234	1
1236	1
1237	1
1241	1
1243	1
1244	2
1247	1
1248	1
1250	1
1252	1
1253	1
1254	2
1255	1
1256	1
1258	1
1260	1
1266	1
1268	1
1269	1
1270	1
1272	2
1275	1
1276	1
1278	2
1279	1
1282	2
1284	1
1286	1
1289	1
1296	1
1299	3
1301	1
1305	2
1308	4
1309	1
1310	1
1312	1
1316	1
1321	1
1324	1
1327	1
1328	1
1329	1
1331	1
1332	1
1336	3
1340	2
1344	2
1348	2
1349	2
1351	2
1352	1
1362	1
1364	1
1365	1
1367	1
1369	1
1372	1
1378	1
1384	1
1387	1
1389	2
1390	1
1391	1
1394	1
1395	2
1397	1
1398	1
1399	1
1400	1
1402	1
1404	1
1410	1
1414	1
1416	1
1418	2
1419	2
1420	1
1422	3
1425	1
1427	1
1429	1
1430	1
1433	1
1435	1
1439	2
1440	1
1448	1
1451	1
1452	1
1457	1
1459	1
1462	1
1472	1
1473	1
1477	2
1480	1
1487	1
1491	2
1493	1
1496	2
1502	1
1510	1
1517	1
1519	1
1520	1
1522	2
1523	1
1528	1
1529	1
1536	1
1540	1
1541	1
1544	1
1549	1
1551	1
1554	2
1555	1
1557	1
1558	2
1562	1
1564	1
1566	1
1569	1
1572	1
1575	1
1577	1
1585	1
1589	1
1591	1
1593	1
1595	1
1599	1
1600	1
1607	1
1610	1
1611	1
1621	1
1633	1
1638	1
1645	1
1649	2
1660	1
1663	1
1669	1
1670	2
1672	1
1673	1
1677	1
1679	1
1683	1
1684	1
1688	1
1689	1
1693	1
1697	1
1714	1
1716	1
1724	1
1725	1
1729	1
1731	1
1732	1
1742	2
1743	1
1747	1
1760	1
1774	1
1778	1
1781	1
1783	1
1785	1
1786	1
1787	1
1795	2
1799	1
1804	1
1808	1
1817	1
1821	1
1827	1
1832	1
1846	1
1847	1
1849	2
1855	1
1863	1
1864	1
1878	2
1896	1
1906	1
1908	2
1929	1
1930	1
1939	1
1942	1
1948	1
1960	1
1982	1
1993	1
2006	1
2008	1
2016	1
2019	1
2032	1
2036	2
2046	1
2077	1
2086	1
2099	1
2100	1
2136	1
2142	1
2153	1
2155	1
2157	1
2167	1
2185	1
2191	1
2211	1
2217	1
2222	1
2243	1
2261	1
2289	1
2312	1
2339	1
2356	1
2371	1
2376	1
2381	1
2407	1
2410	1
2469	1
2517	1
2518	1
2539	1
2561	1
2571	1
2581	1
2589	1
2639	1
2667	1
2704	1
2737	1
2780	1
2789	1
2817	1
2828	1
2835	1
2868	1
2874	1
2876	1
2897	1
2909	1
2922	1
2930	1
2972	1
2978	1
2981	1
3010	1
3054	1
3071	1
3073	1
3120	1
3123	2
3126	1
3169	1
3171	1
3193	1
3210	1
3233	1
3259	1
3350	1
3355	1
3365	1
3432	1
3465	1
3476	1
3568	1
3619	1
3635	1
3654	1
3746	1
3772	1
3801	1
3864	1
4094	1
4112	1
4259	1
4339	1
4367	1
4646	1
4673	1
4915	1
5242	1
5307	1
5554	1
6568	1
8678	1
8712	1
15109	1
18650	1
20065	1
62444	1
1290909	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
............._.................._._..............._..........._.........
_.._..._......._......_...............
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]