Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/b872e28220afc691e2436943e53b1e/1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/ca4d20e41802bc8c33ea65523f74cb/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/40bd12324ae13582450cf54442a9ee/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/40bd12324ae13582450cf54442a9ee/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/71c96b76b94fbcb9edbd382e6acfa8/1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 339976394
[W::hts_idx_load3] The index file is older than the data file: 1173_D6K_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	339976394
Known Splicing Events:	337589313
Partial Novel Splicing Events:	1495008
Novel Splicing Events:	812123
Filtered Splicing Events:	79950

Total splicing  Junctions:	601447
Known Splicing Junctions:	292190
Partial Novel Splicing Junctions:	181086
Novel Splicing Junctions:	128171

===================================================================
Create BED file ...
Create Interact file ...