Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/cbd700059645eea2a3c03d9ece103d/1173_CRX_T1_RNA_SLD_01_A23T55JLT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/7a47d2eea6cb5fcee926cc078471fa/1173_CRX_T1_RNA_SLD_01_A23T55JLT4_1.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/85e12f16484f693a79b0445b2ae186/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/85e12f16484f693a79b0445b2ae186/.command.run
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_1/abundance.h5
Successfully converted 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_1/abundance.h5 to 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_1_kallisto_mqc.tsv
  Sample: 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_1
  Mean Fragment Length: 111.8 bp
  Median Fragment Length: 106.0 bp
  pct_mito_est_counts: 0.022%
  pct_ribo_est_counts: 1.562%
  pct_hk_est_counts: 0.577%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.048%
  pct_ribo_tpm: 4.639%
  pct_hk_tpm: 0.891%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 5.281%