Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/ab15a545bb04512ac9510e9fbc5510/1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-fe242a7f-c5b9-4d3f-88fa-f3e739280d3a/45/503758169673f6b79761b4db9d3b84/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/e1c13dd44165514fcaf06209a7bec7/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/e1c13dd44165514fcaf06209a7bec7/.command.sh
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/fc4a8eea173b9180ff1016b57ca428/1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
RIMKLB--AP000442.1
starfusion
arriba
LTBP3--GANAB
starfusion
arriba
ZPR1--APOA1
starfusion
arriba
AC025884.2--IGH-@-ext
starfusion
COL1A1--SLC45A4
starfusion
IQGAP1--SEMA4B
starfusion
arriba
TLK2P1--AC110079.1
starfusion
STX16--NPEPL1
starfusion
arriba
TLK2--AC240565.1
starfusion
SLC22A20P--EGILA
starfusion
arriba
PDXDC2P--NPIPB3
starfusion
TVP23C--CDRT4
arriba
AC015911.9--SLFN12L
arriba
KLRC4--KLRK1
arriba
ZFP64--RPL36P1
arriba
ZFP64--TSHZ2
arriba
RAPGEF6--KRAS
arriba
RAPGEF6--AC087239.1
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHA13
arriba
0%| | 0/21 [00:00<?, ?it/s]
Processing RIMKLB--AP000442.1: 0%| | 0/21 [00:00<?, ?it/s]
Processing RIMKLB--AP000442.1: 5%|▍ | 1/21 [00:00<00:02, 9.20it/s]
Processing LTBP3--GANAB: 5%|▍ | 1/21 [00:00<00:02, 9.20it/s]
Processing LTBP3--GANAB: 10%|▉ | 2/21 [00:00<00:02, 9.44it/s]
Processing ZPR1--APOA1: 10%|▉ | 2/21 [00:00<00:02, 9.44it/s]
Processing ZPR1--APOA1: 14%|█▍ | 3/21 [00:00<00:01, 9.53it/s]
Processing AC025884.2--IGH-@-ext: 14%|█▍ | 3/21 [00:00<00:01, 9.53it/s]
Processing AC025884.2--IGH-@-ext: 19%|█▉ | 4/21 [00:00<00:01, 9.57it/s]
Processing COL1A1--SLC45A4: 19%|█▉ | 4/21 [00:00<00:01, 9.57it/s]
Processing COL1A1--SLC45A4: 24%|██▍ | 5/21 [00:00<00:01, 9.59it/s]
Processing IQGAP1--SEMA4B: 24%|██▍ | 5/21 [00:00<00:01, 9.59it/s]
Processing IQGAP1--SEMA4B: 29%|██▊ | 6/21 [00:00<00:01, 9.60it/s]
Processing TLK2P1--AC110079.1: 29%|██▊ | 6/21 [00:00<00:01, 9.60it/s]
Processing TLK2P1--AC110079.1: 33%|███▎ | 7/21 [00:00<00:01, 9.61it/s]
Processing STX16--NPEPL1: 33%|███▎ | 7/21 [00:00<00:01, 9.61it/s]
Processing STX16--NPEPL1: 38%|███▊ | 8/21 [00:00<00:01, 9.62it/s]
Processing TLK2--AC240565.1: 38%|███▊ | 8/21 [00:00<00:01, 9.62it/s]
Processing TLK2--AC240565.1: 43%|████▎ | 9/21 [00:00<00:01, 9.62it/s]
Processing SLC22A20P--EGILA: 43%|████▎ | 9/21 [00:00<00:01, 9.62it/s]
Processing SLC22A20P--EGILA: 48%|████▊ | 10/21 [00:01<00:01, 9.62it/s]
Processing PDXDC2P--NPIPB3: 48%|████▊ | 10/21 [00:01<00:01, 9.62it/s]
Processing PDXDC2P--NPIPB3: 52%|█████▏ | 11/21 [00:01<00:01, 9.62it/s]
Processing TVP23C--CDRT4: 52%|█████▏ | 11/21 [00:01<00:01, 9.62it/s]
Processing TVP23C--CDRT4: 57%|█████▋ | 12/21 [00:01<00:00, 9.63it/s]
Processing AC015911.9--SLFN12L: 57%|█████▋ | 12/21 [00:01<00:00, 9.63it/s]
Processing AC015911.9--SLFN12L: 62%|██████▏ | 13/21 [00:01<00:00, 9.63it/s]
Processing KLRC4--KLRK1: 62%|██████▏ | 13/21 [00:01<00:00, 9.63it/s]
Processing KLRC4--KLRK1: 67%|██████▋ | 14/21 [00:01<00:00, 9.63it/s]
Processing ZFP64--RPL36P1: 67%|██████▋ | 14/21 [00:01<00:00, 9.63it/s]
Processing ZFP64--RPL36P1: 71%|███████▏ | 15/21 [00:01<00:00, 9.63it/s]
Processing ZFP64--TSHZ2: 71%|███████▏ | 15/21 [00:01<00:00, 9.63it/s]
Processing ZFP64--TSHZ2: 76%|███████▌ | 16/21 [00:01<00:00, 9.63it/s]
Processing RAPGEF6--KRAS: 76%|███████▌ | 16/21 [00:01<00:00, 9.63it/s]
Processing RAPGEF6--KRAS: 81%|████████ | 17/21 [00:01<00:00, 9.64it/s]
Processing RAPGEF6--AC087239.1: 81%|████████ | 17/21 [00:01<00:00, 9.64it/s]
Processing RAPGEF6--AC087239.1: 86%|████████▌ | 18/21 [00:01<00:00, 9.63it/s]
Processing PCDHA6--PCDHAC2: 86%|████████▌ | 18/21 [00:01<00:00, 9.63it/s]
Processing PCDHA6--PCDHAC2: 90%|█████████ | 19/21 [00:01<00:00, 9.63it/s]
Processing PCDHA6--PCDHAC1: 90%|█████████ | 19/21 [00:01<00:00, 9.63it/s]
Processing PCDHA6--PCDHAC1: 95%|█████████▌| 20/21 [00:02<00:00, 9.63it/s]
Processing PCDHA6--PCDHA13: 95%|█████████▌| 20/21 [00:02<00:00, 9.63it/s]
Processing PCDHA6--PCDHA13: 100%|██████████| 21/21 [00:02<00:00, 9.63it/s]
Processing PCDHA6--PCDHA13: 100%|██████████| 21/21 [00:02<00:00, 9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory