Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/ab15a545bb04512ac9510e9fbc5510/1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-fe242a7f-c5b9-4d3f-88fa-f3e739280d3a/45/503758169673f6b79761b4db9d3b84/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/e1c13dd44165514fcaf06209a7bec7/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/e1c13dd44165514fcaf06209a7bec7/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/fc4a8eea173b9180ff1016b57ca428/1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
RIMKLB--AP000442.1
starfusion
arriba
LTBP3--GANAB
starfusion
arriba
ZPR1--APOA1
starfusion
arriba
AC025884.2--IGH-@-ext
starfusion
COL1A1--SLC45A4
starfusion
IQGAP1--SEMA4B
starfusion
arriba
TLK2P1--AC110079.1
starfusion
STX16--NPEPL1
starfusion
arriba
TLK2--AC240565.1
starfusion
SLC22A20P--EGILA
starfusion
arriba
PDXDC2P--NPIPB3
starfusion
TVP23C--CDRT4
arriba
AC015911.9--SLFN12L
arriba
KLRC4--KLRK1
arriba
ZFP64--RPL36P1
arriba
ZFP64--TSHZ2
arriba
RAPGEF6--KRAS
arriba
RAPGEF6--AC087239.1
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHA13
arriba

  0%|          | 0/21 [00:00<?, ?it/s]
Processing RIMKLB--AP000442.1:   0%|          | 0/21 [00:00<?, ?it/s]
Processing RIMKLB--AP000442.1:   5%|▍         | 1/21 [00:00<00:02,  9.20it/s]
Processing LTBP3--GANAB:   5%|▍         | 1/21 [00:00<00:02,  9.20it/s]      
Processing LTBP3--GANAB:  10%|▉         | 2/21 [00:00<00:02,  9.44it/s]
Processing ZPR1--APOA1:  10%|▉         | 2/21 [00:00<00:02,  9.44it/s] 
Processing ZPR1--APOA1:  14%|█▍        | 3/21 [00:00<00:01,  9.53it/s]
Processing AC025884.2--IGH-@-ext:  14%|█▍        | 3/21 [00:00<00:01,  9.53it/s]
Processing AC025884.2--IGH-@-ext:  19%|█▉        | 4/21 [00:00<00:01,  9.57it/s]
Processing COL1A1--SLC45A4:  19%|█▉        | 4/21 [00:00<00:01,  9.57it/s]      
Processing COL1A1--SLC45A4:  24%|██▍       | 5/21 [00:00<00:01,  9.59it/s]
Processing IQGAP1--SEMA4B:  24%|██▍       | 5/21 [00:00<00:01,  9.59it/s] 
Processing IQGAP1--SEMA4B:  29%|██▊       | 6/21 [00:00<00:01,  9.60it/s]
Processing TLK2P1--AC110079.1:  29%|██▊       | 6/21 [00:00<00:01,  9.60it/s]
Processing TLK2P1--AC110079.1:  33%|███▎      | 7/21 [00:00<00:01,  9.61it/s]
Processing STX16--NPEPL1:  33%|███▎      | 7/21 [00:00<00:01,  9.61it/s]     
Processing STX16--NPEPL1:  38%|███▊      | 8/21 [00:00<00:01,  9.62it/s]
Processing TLK2--AC240565.1:  38%|███▊      | 8/21 [00:00<00:01,  9.62it/s]
Processing TLK2--AC240565.1:  43%|████▎     | 9/21 [00:00<00:01,  9.62it/s]
Processing SLC22A20P--EGILA:  43%|████▎     | 9/21 [00:00<00:01,  9.62it/s]
Processing SLC22A20P--EGILA:  48%|████▊     | 10/21 [00:01<00:01,  9.62it/s]
Processing PDXDC2P--NPIPB3:  48%|████▊     | 10/21 [00:01<00:01,  9.62it/s] 
Processing PDXDC2P--NPIPB3:  52%|█████▏    | 11/21 [00:01<00:01,  9.62it/s]
Processing TVP23C--CDRT4:  52%|█████▏    | 11/21 [00:01<00:01,  9.62it/s]  
Processing TVP23C--CDRT4:  57%|█████▋    | 12/21 [00:01<00:00,  9.63it/s]
Processing AC015911.9--SLFN12L:  57%|█████▋    | 12/21 [00:01<00:00,  9.63it/s]
Processing AC015911.9--SLFN12L:  62%|██████▏   | 13/21 [00:01<00:00,  9.63it/s]
Processing KLRC4--KLRK1:  62%|██████▏   | 13/21 [00:01<00:00,  9.63it/s]       
Processing KLRC4--KLRK1:  67%|██████▋   | 14/21 [00:01<00:00,  9.63it/s]
Processing ZFP64--RPL36P1:  67%|██████▋   | 14/21 [00:01<00:00,  9.63it/s]
Processing ZFP64--RPL36P1:  71%|███████▏  | 15/21 [00:01<00:00,  9.63it/s]
Processing ZFP64--TSHZ2:  71%|███████▏  | 15/21 [00:01<00:00,  9.63it/s]  
Processing ZFP64--TSHZ2:  76%|███████▌  | 16/21 [00:01<00:00,  9.63it/s]
Processing RAPGEF6--KRAS:  76%|███████▌  | 16/21 [00:01<00:00,  9.63it/s]
Processing RAPGEF6--KRAS:  81%|████████  | 17/21 [00:01<00:00,  9.64it/s]
Processing RAPGEF6--AC087239.1:  81%|████████  | 17/21 [00:01<00:00,  9.64it/s]
Processing RAPGEF6--AC087239.1:  86%|████████▌ | 18/21 [00:01<00:00,  9.63it/s]
Processing PCDHA6--PCDHAC2:  86%|████████▌ | 18/21 [00:01<00:00,  9.63it/s]    
Processing PCDHA6--PCDHAC2:  90%|█████████ | 19/21 [00:01<00:00,  9.63it/s]
Processing PCDHA6--PCDHAC1:  90%|█████████ | 19/21 [00:01<00:00,  9.63it/s]
Processing PCDHA6--PCDHAC1:  95%|█████████▌| 20/21 [00:02<00:00,  9.63it/s]
Processing PCDHA6--PCDHA13:  95%|█████████▌| 20/21 [00:02<00:00,  9.63it/s]
Processing PCDHA6--PCDHA13: 100%|██████████| 21/21 [00:02<00:00,  9.63it/s]
Processing PCDHA6--PCDHA13: 100%|██████████| 21/21 [00:02<00:00,  9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory