File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/58f409ee35eb847b5db78453340ff3/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:12:25
                             Started mapping on |	Jun 08 09:18:48
                                    Finished on |	Jun 08 09:41:55
       Mapping speed, Million of reads per hour |	381.79

                          Number of input reads |	147096461
                      Average input read length |	202
                                    UNIQUE READS:
                   Uniquely mapped reads number |	138990499
                        Uniquely mapped reads % |	94.49%
                          Average mapped length |	200.89
                       Number of splices: Total |	87544614
            Number of splices: Annotated (sjdb) |	85816712
                       Number of splices: GT/AG |	86271565
                       Number of splices: GC/AG |	616798
                       Number of splices: AT/AC |	60585
               Number of splices: Non-canonical |	595666
                      Mismatch rate per base, % |	0.59%
                         Deletion rate per base |	0.04%
                        Deletion average length |	2.15
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.67
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	5476635
             % of reads mapped to multiple loci |	3.72%
        Number of reads mapped to too many loci |	377878
             % of reads mapped to too many loci |	0.26%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1814541
                 % of reads unmapped: too short |	1.23%
                Number of reads unmapped: other |	436908
                     % of reads unmapped: other |	0.30%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%