Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/5d15729b54849fcde63317ef7f487c/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/5d15729b54849fcde63317ef7f487c/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/55d4990929a49b1df9a5c04c10e423/1173_C31_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
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Processed 40000000 records
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Processed 99000000 records
Processed 100000000 records
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Processed 127000000 records
Processed 128000000 records
Processed 129000000 records
Processed 130000000 records
Processed 131000000 records
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Processed 135000000 records
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Processed 139000000 records
Processed 140000000 records
Processed 141000000 records
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Processed 147000000 records
Processed 148000000 records
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Processed 151000000 records
Processed 152000000 records
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Processed 160000000 records
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Processed 204000000 records
paired = 101423116
unpaired = 1988459
MERGED PAIRED END READS = 101423116
MATES PROCESSED = 204834691
TOTAL READS = 103411575
DISTINCT READS = 6.6045e+07
DISTINCT COUNTS = 611
MAX COUNT = 424908
COUNTS OF 1 = 4.92833e+07
MAX TERMS = 100
OBSERVED COUNTS (424909)
1 49283341
2 10543988
3 3077699
4 1223857
5 610271
6 351844
7 222148
8 150634
9 106986
10 79503
11 60755
12 47260
13 37707
14 30515
15 25234
16 20949
17 17684
18 15220
19 12914
20 11013
21 9849
22 8503
23 7459
24 6708
25 5919
26 5349
27 4768
28 4323
29 3952
30 3428
31 3251
32 2928
33 2808
34 2490
35 2220
36 2131
37 1929
38 1819
39 1646
40 1572
41 1480
42 1325
43 1275
44 1175
45 1103
46 1105
47 990
48 899
49 869
50 808
51 797
52 755
53 706
54 688
55 605
56 642
57 572
58 561
59 517
60 492
61 492
62 426
63 465
64 407
65 390
66 405
67 358
68 360
69 362
70 305
71 319
72 318
73 250
74 244
75 256
76 224
77 270
78 238
79 234
80 212
81 175
82 195
83 193
84 195
85 186
86 164
87 164
88 152
89 194
90 165
91 119
92 148
93 137
94 138
95 136
96 115
97 122
98 117
99 124
100 129
101 111
102 115
103 109
104 93
105 83
106 94
107 80
108 83
109 75
110 75
111 87
112 72
113 68
114 53
115 81
116 73
117 75
118 63
119 73
120 63
121 56
122 83
123 64
124 53
125 55
126 56
127 45
128 46
129 39
130 50
131 60
132 63
133 50
134 61
135 47
136 43
137 43
138 53
139 55
140 44
141 33
142 47
143 39
144 48
145 28
146 36
147 37
148 32
149 32
150 30
151 32
152 34
153 34
154 33
155 34
156 28
157 23
158 28
159 23
160 36
161 22
162 29
163 31
164 28
165 29
166 22
167 20
168 18
169 25
170 21
171 21
172 17
173 27
174 32
175 31
176 22
177 28
178 15
179 21
180 20
181 22
182 22
183 16
184 18
185 20
186 8
187 21
188 11
189 14
190 14
191 20
192 13
193 11
194 22
195 23
196 10
197 14
198 13
199 14
200 19
201 14
202 8
203 12
204 10
205 9
206 18
207 9
208 7
209 10
210 8
211 18
212 13
213 8
214 18
215 13
216 13
217 9
218 11
219 11
220 17
221 4
222 9
223 9
224 4
225 10
226 10
227 7
228 9
229 7
230 11
231 10
232 7
233 5
234 11
235 8
236 11
237 11
238 7
239 4
240 12
241 9
242 7
243 6
244 12
245 5
246 5
247 4
248 6
249 11
250 7
251 3
252 1
253 4
254 10
255 5
256 5
257 8
258 5
259 5
260 6
261 9
262 6
263 10
264 6
265 3
266 3
267 6
268 4
269 3
270 5
271 4
272 5
273 4
274 2
275 6
276 4
277 4
278 6
279 8
280 2
281 6
282 4
283 5
284 4
285 7
286 6
287 6
288 4
289 6
290 5
291 5
292 8
293 5
294 5
295 2
296 4
297 4
298 7
299 4
300 4
301 2
302 5
303 1
304 1
305 1
306 1
307 1
308 5
309 1
310 4
311 10
312 5
313 6
314 4
316 7
317 3
318 2
319 2
320 4
321 2
322 3
323 4
324 5
325 3
326 6
327 3
328 5
329 4
330 6
331 2
332 4
333 3
334 3
335 3
336 4
337 1
338 2
340 1
342 2
343 1
344 2
345 5
346 3
347 2
348 6
349 2
350 4
351 1
352 4
354 3
355 4
356 1
357 6
359 2
360 3
361 3
363 2
364 2
365 1
366 1
367 4
369 5
371 1
372 2
373 3
374 2
375 2
376 2
377 2
378 2
380 2
381 2
382 1
383 1
384 3
385 1
386 3
387 4
388 3
389 4
390 1
394 1
395 5
396 1
397 1
399 1
400 2
401 2
402 4
403 1
404 2
405 2
406 1
407 1
408 2
409 1
410 3
413 1
415 6
416 3
417 3
418 1
419 2
421 2
422 1
423 1
424 2
425 2
426 3
427 1
428 3
429 3
430 3
432 1
435 1
436 1
438 1
439 1
441 2
442 2
443 1
444 4
446 1
447 2
448 1
449 1
451 1
454 2
456 1
457 1
460 1
461 4
462 1
463 1
464 2
465 1
469 1
470 2
471 2
473 1
475 2
478 2
483 2
484 1
485 1
488 1
489 1
491 3
493 1
495 1
496 1
497 2
498 1
500 1
502 1
507 1
512 1
514 1
515 1
516 1
517 3
519 1
520 2
522 1
524 1
525 2
528 1
529 1
532 1
533 3
534 1
535 1
537 1
538 1
539 3
540 1
542 3
545 2
547 1
550 1
561 2
564 1
568 1
574 1
575 1
576 2
577 1
579 1
581 1
583 1
587 1
590 1
593 1
594 1
603 1
604 1
606 2
609 2
614 1
619 1
622 2
628 1
631 1
632 2
634 1
636 2
645 1
651 1
652 1
653 1
656 1
664 1
665 1
672 1
674 1
676 1
679 1
687 1
690 1
702 1
703 1
704 1
713 1
717 1
725 1
726 2
730 1
733 1
734 1
736 1
741 1
744 1
748 1
749 1
751 1
759 1
760 3
770 1
773 1
774 1
783 1
785 1
789 1
793 1
805 1
830 1
845 1
866 1
872 1
874 1
877 1
878 1
892 1
899 1
902 1
906 1
927 1
933 1
964 1
968 1
972 2
982 1
1000 1
1004 1
1009 1
1018 1
1039 1
1052 1
1061 1
1069 1
1081 1
1083 1
1089 1
1091 1
1093 1
1106 1
1110 1
1111 1
1113 1
1115 1
1121 1
1129 1
1138 1
1155 1
1169 1
1171 2
1175 1
1176 1
1199 1
1207 1
1209 1
1267 1
1269 1
1288 1
1290 1
1298 1
1393 1
1555 1
1557 1
1613 1
1726 1
2117 1
2184 1
2669 1
3048 1
3618 1
4066 1
4092 1
5991 1
20244 1
424908 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.__.....__._..._.__.._._......_._........._..._.._._........_._.._..._..
._...._._._..._.__._.._..............___............_........
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]