Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/5d15729b54849fcde63317ef7f487c/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/5d15729b54849fcde63317ef7f487c/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/55d4990929a49b1df9a5c04c10e423/1173_C31_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam ==> STAGING COMPLETE (3 inputs) PAIRED_END_BAM_INPUT Processed 1000000 records Processed 2000000 records Processed 3000000 records Processed 4000000 records Processed 5000000 records Processed 6000000 records Processed 7000000 records Processed 8000000 records Processed 9000000 records Processed 10000000 records Processed 11000000 records Processed 12000000 records Processed 13000000 records Processed 14000000 records Processed 15000000 records Processed 16000000 records Processed 17000000 records Processed 18000000 records Processed 19000000 records Processed 20000000 records Processed 21000000 records Processed 22000000 records Processed 23000000 records Processed 24000000 records Processed 25000000 records Processed 26000000 records Processed 27000000 records Processed 28000000 records Processed 29000000 records Processed 30000000 records Processed 31000000 records Processed 32000000 records Processed 33000000 records Processed 34000000 records Processed 35000000 records Processed 36000000 records Processed 37000000 records Processed 38000000 records Processed 39000000 records Processed 40000000 records Processed 41000000 records Processed 42000000 records Processed 43000000 records Processed 44000000 records Processed 45000000 records Processed 46000000 records Processed 47000000 records Processed 48000000 records Processed 49000000 records Processed 50000000 records Processed 51000000 records Processed 52000000 records Processed 53000000 records Processed 54000000 records Processed 55000000 records Processed 56000000 records Processed 57000000 records Processed 58000000 records Processed 59000000 records Processed 60000000 records Processed 61000000 records Processed 62000000 records Processed 63000000 records Processed 64000000 records Processed 65000000 records Processed 66000000 records Processed 67000000 records Processed 68000000 records Processed 69000000 records Processed 70000000 records Processed 71000000 records Processed 72000000 records Processed 73000000 records Processed 74000000 records Processed 75000000 records Processed 76000000 records Processed 77000000 records Processed 78000000 records Processed 79000000 records Processed 80000000 records Processed 81000000 records Processed 82000000 records Processed 83000000 records Processed 84000000 records Processed 85000000 records Processed 86000000 records Processed 87000000 records Processed 88000000 records Processed 89000000 records Processed 90000000 records Processed 91000000 records Processed 92000000 records Processed 93000000 records Processed 94000000 records Processed 95000000 records Processed 96000000 records Processed 97000000 records Processed 98000000 records Processed 99000000 records Processed 100000000 records Processed 101000000 records Processed 102000000 records Processed 103000000 records Processed 104000000 records Processed 105000000 records Processed 106000000 records Processed 107000000 records Processed 108000000 records Processed 109000000 records Processed 110000000 records Processed 111000000 records Processed 112000000 records Processed 113000000 records Processed 114000000 records Processed 115000000 records Processed 116000000 records Processed 117000000 records Processed 118000000 records Processed 119000000 records Processed 120000000 records Processed 121000000 records Processed 122000000 records Processed 123000000 records Processed 124000000 records Processed 125000000 records Processed 126000000 records Processed 127000000 records Processed 128000000 records Processed 129000000 records Processed 130000000 records Processed 131000000 records Processed 132000000 records Processed 133000000 records Processed 134000000 records Processed 135000000 records Processed 136000000 records Processed 137000000 records Processed 138000000 records Processed 139000000 records Processed 140000000 records Processed 141000000 records Processed 142000000 records Processed 143000000 records Processed 144000000 records Processed 145000000 records Processed 146000000 records Processed 147000000 records Processed 148000000 records Processed 149000000 records Processed 150000000 records Processed 151000000 records Processed 152000000 records Processed 153000000 records Processed 154000000 records Processed 155000000 records Processed 156000000 records Processed 157000000 records Processed 158000000 records Processed 159000000 records Processed 160000000 records Processed 161000000 records Processed 162000000 records Processed 163000000 records Processed 164000000 records Processed 165000000 records Processed 166000000 records Processed 167000000 records Processed 168000000 records Processed 169000000 records Processed 170000000 records Processed 171000000 records Processed 172000000 records Processed 173000000 records Processed 174000000 records Processed 175000000 records Processed 176000000 records Processed 177000000 records Processed 178000000 records Processed 179000000 records Processed 180000000 records Processed 181000000 records Processed 182000000 records Processed 183000000 records Processed 184000000 records Processed 185000000 records Processed 186000000 records Processed 187000000 records Processed 188000000 records Processed 189000000 records Processed 190000000 records Processed 191000000 records Processed 192000000 records Processed 193000000 records Processed 194000000 records Processed 195000000 records Processed 196000000 records Processed 197000000 records Processed 198000000 records Processed 199000000 records Processed 200000000 records Processed 201000000 records Processed 202000000 records Processed 203000000 records Processed 204000000 records paired = 101423116 unpaired = 1988459 MERGED PAIRED END READS = 101423116 MATES PROCESSED = 204834691 TOTAL READS = 103411575 DISTINCT READS = 6.6045e+07 DISTINCT COUNTS = 611 MAX COUNT = 424908 COUNTS OF 1 = 4.92833e+07 MAX TERMS = 100 OBSERVED COUNTS (424909) 1 49283341 2 10543988 3 3077699 4 1223857 5 610271 6 351844 7 222148 8 150634 9 106986 10 79503 11 60755 12 47260 13 37707 14 30515 15 25234 16 20949 17 17684 18 15220 19 12914 20 11013 21 9849 22 8503 23 7459 24 6708 25 5919 26 5349 27 4768 28 4323 29 3952 30 3428 31 3251 32 2928 33 2808 34 2490 35 2220 36 2131 37 1929 38 1819 39 1646 40 1572 41 1480 42 1325 43 1275 44 1175 45 1103 46 1105 47 990 48 899 49 869 50 808 51 797 52 755 53 706 54 688 55 605 56 642 57 572 58 561 59 517 60 492 61 492 62 426 63 465 64 407 65 390 66 405 67 358 68 360 69 362 70 305 71 319 72 318 73 250 74 244 75 256 76 224 77 270 78 238 79 234 80 212 81 175 82 195 83 193 84 195 85 186 86 164 87 164 88 152 89 194 90 165 91 119 92 148 93 137 94 138 95 136 96 115 97 122 98 117 99 124 100 129 101 111 102 115 103 109 104 93 105 83 106 94 107 80 108 83 109 75 110 75 111 87 112 72 113 68 114 53 115 81 116 73 117 75 118 63 119 73 120 63 121 56 122 83 123 64 124 53 125 55 126 56 127 45 128 46 129 39 130 50 131 60 132 63 133 50 134 61 135 47 136 43 137 43 138 53 139 55 140 44 141 33 142 47 143 39 144 48 145 28 146 36 147 37 148 32 149 32 150 30 151 32 152 34 153 34 154 33 155 34 156 28 157 23 158 28 159 23 160 36 161 22 162 29 163 31 164 28 165 29 166 22 167 20 168 18 169 25 170 21 171 21 172 17 173 27 174 32 175 31 176 22 177 28 178 15 179 21 180 20 181 22 182 22 183 16 184 18 185 20 186 8 187 21 188 11 189 14 190 14 191 20 192 13 193 11 194 22 195 23 196 10 197 14 198 13 199 14 200 19 201 14 202 8 203 12 204 10 205 9 206 18 207 9 208 7 209 10 210 8 211 18 212 13 213 8 214 18 215 13 216 13 217 9 218 11 219 11 220 17 221 4 222 9 223 9 224 4 225 10 226 10 227 7 228 9 229 7 230 11 231 10 232 7 233 5 234 11 235 8 236 11 237 11 238 7 239 4 240 12 241 9 242 7 243 6 244 12 245 5 246 5 247 4 248 6 249 11 250 7 251 3 252 1 253 4 254 10 255 5 256 5 257 8 258 5 259 5 260 6 261 9 262 6 263 10 264 6 265 3 266 3 267 6 268 4 269 3 270 5 271 4 272 5 273 4 274 2 275 6 276 4 277 4 278 6 279 8 280 2 281 6 282 4 283 5 284 4 285 7 286 6 287 6 288 4 289 6 290 5 291 5 292 8 293 5 294 5 295 2 296 4 297 4 298 7 299 4 300 4 301 2 302 5 303 1 304 1 305 1 306 1 307 1 308 5 309 1 310 4 311 10 312 5 313 6 314 4 316 7 317 3 318 2 319 2 320 4 321 2 322 3 323 4 324 5 325 3 326 6 327 3 328 5 329 4 330 6 331 2 332 4 333 3 334 3 335 3 336 4 337 1 338 2 340 1 342 2 343 1 344 2 345 5 346 3 347 2 348 6 349 2 350 4 351 1 352 4 354 3 355 4 356 1 357 6 359 2 360 3 361 3 363 2 364 2 365 1 366 1 367 4 369 5 371 1 372 2 373 3 374 2 375 2 376 2 377 2 378 2 380 2 381 2 382 1 383 1 384 3 385 1 386 3 387 4 388 3 389 4 390 1 394 1 395 5 396 1 397 1 399 1 400 2 401 2 402 4 403 1 404 2 405 2 406 1 407 1 408 2 409 1 410 3 413 1 415 6 416 3 417 3 418 1 419 2 421 2 422 1 423 1 424 2 425 2 426 3 427 1 428 3 429 3 430 3 432 1 435 1 436 1 438 1 439 1 441 2 442 2 443 1 444 4 446 1 447 2 448 1 449 1 451 1 454 2 456 1 457 1 460 1 461 4 462 1 463 1 464 2 465 1 469 1 470 2 471 2 473 1 475 2 478 2 483 2 484 1 485 1 488 1 489 1 491 3 493 1 495 1 496 1 497 2 498 1 500 1 502 1 507 1 512 1 514 1 515 1 516 1 517 3 519 1 520 2 522 1 524 1 525 2 528 1 529 1 532 1 533 3 534 1 535 1 537 1 538 1 539 3 540 1 542 3 545 2 547 1 550 1 561 2 564 1 568 1 574 1 575 1 576 2 577 1 579 1 581 1 583 1 587 1 590 1 593 1 594 1 603 1 604 1 606 2 609 2 614 1 619 1 622 2 628 1 631 1 632 2 634 1 636 2 645 1 651 1 652 1 653 1 656 1 664 1 665 1 672 1 674 1 676 1 679 1 687 1 690 1 702 1 703 1 704 1 713 1 717 1 725 1 726 2 730 1 733 1 734 1 736 1 741 1 744 1 748 1 749 1 751 1 759 1 760 3 770 1 773 1 774 1 783 1 785 1 789 1 793 1 805 1 830 1 845 1 866 1 872 1 874 1 877 1 878 1 892 1 899 1 902 1 906 1 927 1 933 1 964 1 968 1 972 2 982 1 1000 1 1004 1 1009 1 1018 1 1039 1 1052 1 1061 1 1069 1 1081 1 1083 1 1089 1 1091 1 1093 1 1106 1 1110 1 1111 1 1113 1 1115 1 1121 1 1129 1 1138 1 1155 1 1169 1 1171 2 1175 1 1176 1 1199 1 1207 1 1209 1 1267 1 1269 1 1288 1 1290 1 1298 1 1393 1 1555 1 1557 1 1613 1 1726 1 2117 1 2184 1 2669 1 3048 1 3618 1 4066 1 4092 1 5991 1 20244 1 424908 1 [ESTIMATING YIELD CURVE] [BOOTSTRAPPING HISTOGRAM] .__.....__._..._.__.._._......_._........._..._.._._........_._.._..._.. ._...._._._..._.__._.._..............___............_........ [COMPUTING CONFIDENCE INTERVALS] [WRITING OUTPUT]