Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/d370442d96d91ec84d5d88a3f9c486/1173_OHF_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/097d60102241a09edf499d3e6f8eea/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/097d60102241a09edf499d3e6f8eea/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/blacklist_breakpoint_database_2026-04-27.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-fe242a7f-c5b9-4d3f-88fa-f3e739280d3a/0e/64006b836d7933c012afba79f66ebb/arriba_filter_config.yaml
==> STAGING COMPLETE (5 inputs)

  AIH curated blacklist: matched 0 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 13
  Pass (FILTER=PASS): 0 (0.0%)
  Fail (FILTER=FAIL): 13 (100.0%)

Failure reasons (top 15):
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 3
  total_reads_below_min(3.0<8.0): 2
  confidence_below_min(medium<high): 2
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 2
  total_reads_below_min(2.0<8.0): 1
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 1
  confidence_below_min(low<high): 1
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 1

Breakdown by confidence:
  high: 0 pass, 3 fail (total: 3)
  low: 0 pass, 4 fail (total: 4)
  medium: 0 pass, 6 fail (total: 6)
Arriba filter: 13 rows -> 0 PASS; wrote 1173_OHF_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered.tsv and 1173_OHF_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: 1173_OHF_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filter_summary.txt