Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar Running: java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_2.md.bam --METRICS_FILE 1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_2.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT 08:40:29.005 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so [Mon Jun 08 08:40:29 GMT 2026] MarkDuplicates --INPUT 1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_2.md.bam --METRICS_FILE 1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_2.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Mon Jun 08 08:40:29 GMT 2026] Executing as ?@nf-56219f88f9b3096ab5a2db37d76646ba-41f76-p8lwt on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0 INFO 2026-06-08 08:40:29 MarkDuplicates Start of doWork freeMemory: 105828448; totalMemory: 134217728; maxMemory: 63585648640 INFO 2026-06-08 08:40:29 MarkDuplicates Reading input file and constructing read end information. INFO 2026-06-08 08:40:29 MarkDuplicates Will retain up to 230382784 data points before spilling to disk. INFO 2026-06-08 08:40:32 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,387,207 INFO 2026-06-08 08:40:32 MarkDuplicates Tracking 3603 as yet unmatched pairs. 34 records in RAM. INFO 2026-06-08 08:40:34 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:3,463,249 INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 6958 as yet unmatched pairs. 63 records in RAM. INFO 2026-06-08 08:40:36 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 2s. Last read position: chr1:8,358,357 INFO 2026-06-08 08:40:36 MarkDuplicates Tracking 10628 as yet unmatched pairs. 142 records in RAM. INFO 2026-06-08 08:40:38 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:10,646,134 INFO 2026-06-08 08:40:38 MarkDuplicates Tracking 13932 as yet unmatched pairs. 45 records in RAM. INFO 2026-06-08 08:40:40 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 1s. Last read position: chr1:15,563,991 INFO 2026-06-08 08:40:40 MarkDuplicates Tracking 17239 as yet unmatched pairs. 20 records in RAM. INFO 2026-06-08 08:40:42 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:17,410,007 INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 20437 as yet unmatched pairs. 93 records in RAM. INFO 2026-06-08 08:40:44 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:20,654,253 INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 23894 as yet unmatched pairs. 87 records in RAM. INFO 2026-06-08 08:40:45 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:21,873,075 INFO 2026-06-08 08:40:45 MarkDuplicates Tracking 27497 as yet unmatched pairs. 407 records in RAM. INFO 2026-06-08 08:40:47 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:23,692,705 INFO 2026-06-08 08:40:47 MarkDuplicates Tracking 31028 as yet unmatched pairs. 569 records in RAM. INFO 2026-06-08 08:40:49 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:26,729,737 INFO 2026-06-08 08:40:49 MarkDuplicates Tracking 33661 as yet unmatched pairs. 103 records in RAM. INFO 2026-06-08 08:40:51 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:29,148,902 INFO 2026-06-08 08:40:51 MarkDuplicates Tracking 36557 as yet unmatched pairs. 14 records in RAM. INFO 2026-06-08 08:40:52 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:32,222,427 INFO 2026-06-08 08:40:52 MarkDuplicates Tracking 39966 as yet unmatched pairs. 45 records in RAM. INFO 2026-06-08 08:40:54 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:35,192,978 INFO 2026-06-08 08:40:54 MarkDuplicates Tracking 43317 as yet unmatched pairs. 106 records in RAM. INFO 2026-06-08 08:40:56 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:39,444,729 INFO 2026-06-08 08:40:56 MarkDuplicates Tracking 46253 as yet unmatched pairs. 50 records in RAM. INFO 2026-06-08 08:40:58 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 1s. Last read position: chr1:43,426,717 INFO 2026-06-08 08:40:58 MarkDuplicates Tracking 49168 as yet unmatched pairs. 70 records in RAM. INFO 2026-06-08 08:40:59 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:45,511,394 INFO 2026-06-08 08:40:59 MarkDuplicates Tracking 52548 as yet unmatched pairs. 102 records in RAM. INFO 2026-06-08 08:41:01 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 2s. Last read position: chr1:52,028,620 INFO 2026-06-08 08:41:01 MarkDuplicates Tracking 55612 as yet unmatched pairs. 20 records in RAM. INFO 2026-06-08 08:41:04 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 2s. Last read position: chr1:58,782,202 INFO 2026-06-08 08:41:04 MarkDuplicates Tracking 59090 as yet unmatched pairs. 359 records in RAM. INFO 2026-06-08 08:41:05 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:77,870,734 INFO 2026-06-08 08:41:05 MarkDuplicates Tracking 61696 as yet unmatched pairs. 25 records in RAM. INFO 2026-06-08 08:41:06 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:94,926,901 INFO 2026-06-08 08:41:06 MarkDuplicates Tracking 64828 as yet unmatched pairs. 119 records in RAM. INFO 2026-06-08 08:41:08 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:110,041,539 INFO 2026-06-08 08:41:08 MarkDuplicates Tracking 67440 as yet unmatched pairs. 15 records in RAM. INFO 2026-06-08 08:41:09 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:114,727,021 INFO 2026-06-08 08:41:09 MarkDuplicates Tracking 70580 as yet unmatched pairs. 41 records in RAM. INFO 2026-06-08 08:41:11 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:119,925,660 INFO 2026-06-08 08:41:11 MarkDuplicates Tracking 73807 as yet unmatched pairs. 357 records in RAM. INFO 2026-06-08 08:41:13 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:145,993,876 INFO 2026-06-08 08:41:13 MarkDuplicates Tracking 75664 as yet unmatched pairs. 154 records in RAM. INFO 2026-06-08 08:41:15 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:148,953,707 INFO 2026-06-08 08:41:15 MarkDuplicates Tracking 76805 as yet unmatched pairs. 15 records in RAM. INFO 2026-06-08 08:41:16 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:149,852,712 INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 78691 as yet unmatched pairs. 99 records in RAM. INFO 2026-06-08 08:41:18 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:150,579,293 INFO 2026-06-08 08:41:18 MarkDuplicates Tracking 81580 as yet unmatched pairs. 469 records in RAM. INFO 2026-06-08 08:41:19 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:151,428,028 INFO 2026-06-08 08:41:19 MarkDuplicates Tracking 84288 as yet unmatched pairs. 132 records in RAM. INFO 2026-06-08 08:41:21 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:153,930,335 INFO 2026-06-08 08:41:21 MarkDuplicates Tracking 87217 as yet unmatched pairs. 22 records in RAM. INFO 2026-06-08 08:41:22 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:154,176,121 INFO 2026-06-08 08:41:22 MarkDuplicates Tracking 92960 as yet unmatched pairs. 2984 records in RAM. INFO 2026-06-08 08:41:24 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:154,974,738 INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 93121 as yet unmatched pairs. 53 records in RAM. INFO 2026-06-08 08:41:26 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 2s. Last read position: chr1:155,235,698 INFO 2026-06-08 08:41:26 MarkDuplicates Tracking 96147 as yet unmatched pairs. 79 records in RAM. INFO 2026-06-08 08:41:27 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:155,951,509 INFO 2026-06-08 08:41:27 MarkDuplicates Tracking 98788 as yet unmatched pairs. 64 records in RAM. INFO 2026-06-08 08:41:29 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:156,138,739 INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 102971 as yet unmatched pairs. 242 records in RAM. INFO 2026-06-08 08:41:30 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:156,941,980 INFO 2026-06-08 08:41:30 MarkDuplicates Tracking 105803 as yet unmatched pairs. 30 records in RAM. INFO 2026-06-08 08:41:32 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:161,000,760 INFO 2026-06-08 08:41:32 MarkDuplicates Tracking 109084 as yet unmatched pairs. 229 records in RAM. INFO 2026-06-08 08:41:34 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:161,673,042 INFO 2026-06-08 08:41:34 MarkDuplicates Tracking 111642 as yet unmatched pairs. 112 records in RAM. INFO 2026-06-08 08:41:36 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:169,127,223 INFO 2026-06-08 08:41:36 MarkDuplicates Tracking 114840 as yet unmatched pairs. 169 records in RAM. INFO 2026-06-08 08:41:37 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:175,136,851 INFO 2026-06-08 08:41:37 MarkDuplicates Tracking 117392 as yet unmatched pairs. 3 records in RAM. INFO 2026-06-08 08:41:39 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:183,549,787 INFO 2026-06-08 08:41:39 MarkDuplicates Tracking 120332 as yet unmatched pairs. 47 records in RAM. INFO 2026-06-08 08:41:41 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 2s. Last read position: chr1:196,715,654 INFO 2026-06-08 08:41:41 MarkDuplicates Tracking 122802 as yet unmatched pairs. 94 records in RAM. INFO 2026-06-08 08:41:43 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:202,741,545 INFO 2026-06-08 08:41:43 MarkDuplicates Tracking 125761 as yet unmatched pairs. 37 records in RAM. INFO 2026-06-08 08:41:44 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:205,718,214 INFO 2026-06-08 08:41:44 MarkDuplicates Tracking 128870 as yet unmatched pairs. 59 records in RAM. INFO 2026-06-08 08:41:46 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:207,752,232 INFO 2026-06-08 08:41:46 MarkDuplicates Tracking 132643 as yet unmatched pairs. 771 records in RAM. INFO 2026-06-08 08:41:47 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:220,882,327 INFO 2026-06-08 08:41:47 MarkDuplicates Tracking 134795 as yet unmatched pairs. 20 records in RAM. INFO 2026-06-08 08:41:49 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:226,736,468 INFO 2026-06-08 08:41:49 MarkDuplicates Tracking 137473 as yet unmatched pairs. 7 records in RAM. INFO 2026-06-08 08:41:50 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:233,258,416 INFO 2026-06-08 08:41:50 MarkDuplicates Tracking 141029 as yet unmatched pairs. 39 records in RAM. INFO 2026-06-08 08:41:52 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:244,856,084 INFO 2026-06-08 08:41:52 MarkDuplicates Tracking 144542 as yet unmatched pairs. 56 records in RAM. INFO 2026-06-08 08:41:55 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 2s. Last read position: chr2:8,865,633 INFO 2026-06-08 08:41:55 MarkDuplicates Tracking 147734 as yet unmatched pairs. 147425 records in RAM. INFO 2026-06-08 08:41:56 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr2:20,263,193 INFO 2026-06-08 08:41:56 MarkDuplicates Tracking 150762 as yet unmatched pairs. 150448 records in RAM. INFO 2026-06-08 08:41:58 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr2:25,282,517 INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 153532 as yet unmatched pairs. 153214 records in RAM. INFO 2026-06-08 08:42:01 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 2s. Last read position: chr2:27,440,498 INFO 2026-06-08 08:42:01 MarkDuplicates Tracking 157023 as yet unmatched pairs. 156699 records in RAM. INFO 2026-06-08 08:42:03 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,254 INFO 2026-06-08 08:42:03 MarkDuplicates Tracking 249477 as yet unmatched pairs. 156629 records in RAM. INFO 2026-06-08 08:42:04 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,263 INFO 2026-06-08 08:42:04 MarkDuplicates Tracking 275404 as yet unmatched pairs. 155713 records in RAM. INFO 2026-06-08 08:42:06 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264 INFO 2026-06-08 08:42:06 MarkDuplicates Tracking 845524 as yet unmatched pairs. 140112 records in RAM. INFO 2026-06-08 08:42:08 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264 INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 1444875 as yet unmatched pairs. 123209 records in RAM. INFO 2026-06-08 08:42:09 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-08 08:42:09 MarkDuplicates Tracking 1637698 as yet unmatched pairs. 118138 records in RAM. INFO 2026-06-08 08:42:11 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-08 08:42:11 MarkDuplicates Tracking 1641467 as yet unmatched pairs. 118058 records in RAM. INFO 2026-06-08 08:42:12 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,413 INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 1709252 as yet unmatched pairs. 116814 records in RAM. INFO 2026-06-08 08:42:13 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr2:38,343,229 INFO 2026-06-08 08:42:13 MarkDuplicates Tracking 1778890 as yet unmatched pairs. 113032 records in RAM. INFO 2026-06-08 08:42:15 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr2:43,286,936 INFO 2026-06-08 08:42:15 MarkDuplicates Tracking 1775580 as yet unmatched pairs. 109720 records in RAM. INFO 2026-06-08 08:42:17 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr2:47,799,505 INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 1771953 as yet unmatched pairs. 106091 records in RAM. INFO 2026-06-08 08:42:19 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 2s. Last read position: chr2:54,987,643 INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 1769302 as yet unmatched pairs. 103440 records in RAM. INFO 2026-06-08 08:42:20 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr2:64,635,899 INFO 2026-06-08 08:42:20 MarkDuplicates Tracking 1765932 as yet unmatched pairs. 100068 records in RAM. INFO 2026-06-08 08:42:22 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:71,185,923 INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 1763034 as yet unmatched pairs. 97168 records in RAM. INFO 2026-06-08 08:42:24 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr2:74,462,570 INFO 2026-06-08 08:42:24 MarkDuplicates Tracking 1760079 as yet unmatched pairs. 94203 records in RAM. INFO 2026-06-08 08:42:26 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 2s. Last read position: chr2:85,609,009 INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 1756784 as yet unmatched pairs. 90895 records in RAM. INFO 2026-06-08 08:42:27 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:95,853,728 INFO 2026-06-08 08:42:27 MarkDuplicates Tracking 1754127 as yet unmatched pairs. 88231 records in RAM. INFO 2026-06-08 08:42:29 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr2:98,555,704 INFO 2026-06-08 08:42:29 MarkDuplicates Tracking 1751036 as yet unmatched pairs. 85137 records in RAM. INFO 2026-06-08 08:42:30 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr2:107,843,596 INFO 2026-06-08 08:42:30 MarkDuplicates Tracking 1748175 as yet unmatched pairs. 82245 records in RAM. INFO 2026-06-08 08:42:32 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:110,361,279 INFO 2026-06-08 08:42:32 MarkDuplicates Tracking 1746199 as yet unmatched pairs. 80261 records in RAM. INFO 2026-06-08 08:42:33 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:113,641,355 INFO 2026-06-08 08:42:33 MarkDuplicates Tracking 1744699 as yet unmatched pairs. 78752 records in RAM. INFO 2026-06-08 08:42:35 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:127,640,116 INFO 2026-06-08 08:42:35 MarkDuplicates Tracking 1741794 as yet unmatched pairs. 75836 records in RAM. INFO 2026-06-08 08:42:36 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:135,782,817 INFO 2026-06-08 08:42:36 MarkDuplicates Tracking 1738770 as yet unmatched pairs. 72806 records in RAM. INFO 2026-06-08 08:42:38 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:159,453,632 INFO 2026-06-08 08:42:38 MarkDuplicates Tracking 1736148 as yet unmatched pairs. 70176 records in RAM. INFO 2026-06-08 08:42:40 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:172,484,772 INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 1733378 as yet unmatched pairs. 67376 records in RAM. INFO 2026-06-08 08:42:41 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:179,132,325 INFO 2026-06-08 08:42:41 MarkDuplicates Tracking 1730631 as yet unmatched pairs. 64622 records in RAM. INFO 2026-06-08 08:42:43 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:188,997,201 INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 1727893 as yet unmatched pairs. 61880 records in RAM. INFO 2026-06-08 08:42:44 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:189,066,450 INFO 2026-06-08 08:42:44 MarkDuplicates Tracking 1724048 as yet unmatched pairs. 58029 records in RAM. INFO 2026-06-08 08:42:46 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:199,323,840 INFO 2026-06-08 08:42:46 MarkDuplicates Tracking 1721245 as yet unmatched pairs. 55226 records in RAM. INFO 2026-06-08 08:42:47 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:205,763,717 INFO 2026-06-08 08:42:47 MarkDuplicates Tracking 1718281 as yet unmatched pairs. 52259 records in RAM. INFO 2026-06-08 08:42:49 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:215,361,969 INFO 2026-06-08 08:42:49 MarkDuplicates Tracking 1718736 as yet unmatched pairs. 52704 records in RAM. INFO 2026-06-08 08:42:50 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:215,371,985 INFO 2026-06-08 08:42:50 MarkDuplicates Tracking 1716429 as yet unmatched pairs. 50397 records in RAM. INFO 2026-06-08 08:42:52 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 2s. Last read position: chr2:215,375,363 INFO 2026-06-08 08:42:52 MarkDuplicates Tracking 1714697 as yet unmatched pairs. 48665 records in RAM. INFO 2026-06-08 08:42:54 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:215,382,227 INFO 2026-06-08 08:42:54 MarkDuplicates Tracking 1710357 as yet unmatched pairs. 44324 records in RAM. INFO 2026-06-08 08:42:56 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 2s. Last read position: chr2:215,394,530 INFO 2026-06-08 08:42:56 MarkDuplicates Tracking 1707976 as yet unmatched pairs. 41943 records in RAM. INFO 2026-06-08 08:42:58 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 2s. Last read position: chr2:215,406,394 INFO 2026-06-08 08:42:58 MarkDuplicates Tracking 1704224 as yet unmatched pairs. 38189 records in RAM. INFO 2026-06-08 08:43:00 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 2s. Last read position: chr2:215,410,090 INFO 2026-06-08 08:43:00 MarkDuplicates Tracking 1702747 as yet unmatched pairs. 36712 records in RAM. INFO 2026-06-08 08:43:02 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:215,425,121 INFO 2026-06-08 08:43:02 MarkDuplicates Tracking 1701816 as yet unmatched pairs. 35780 records in RAM. INFO 2026-06-08 08:43:03 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:215,433,378 INFO 2026-06-08 08:43:03 MarkDuplicates Tracking 1697200 as yet unmatched pairs. 31164 records in RAM. INFO 2026-06-08 08:43:05 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:216,694,668 INFO 2026-06-08 08:43:05 MarkDuplicates Tracking 1690420 as yet unmatched pairs. 24383 records in RAM. INFO 2026-06-08 08:43:07 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:218,432,838 INFO 2026-06-08 08:43:07 MarkDuplicates Tracking 1687628 as yet unmatched pairs. 21590 records in RAM. INFO 2026-06-08 08:43:08 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:219,539,330 INFO 2026-06-08 08:43:08 MarkDuplicates Tracking 1684300 as yet unmatched pairs. 18256 records in RAM. INFO 2026-06-08 08:43:10 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:230,878,036 INFO 2026-06-08 08:43:10 MarkDuplicates Tracking 1681214 as yet unmatched pairs. 15075 records in RAM. INFO 2026-06-08 08:43:12 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 2s. Last read position: chr2:232,790,755 INFO 2026-06-08 08:43:12 MarkDuplicates Tracking 1678374 as yet unmatched pairs. 12231 records in RAM. INFO 2026-06-08 08:43:14 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:237,350,171 INFO 2026-06-08 08:43:14 MarkDuplicates Tracking 1675209 as yet unmatched pairs. 9062 records in RAM. INFO 2026-06-08 08:43:16 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:238,239,006 INFO 2026-06-08 08:43:16 MarkDuplicates Tracking 1671886 as yet unmatched pairs. 5736 records in RAM. INFO 2026-06-08 08:43:17 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:241,249,874 INFO 2026-06-08 08:43:17 MarkDuplicates Tracking 1668198 as yet unmatched pairs. 2038 records in RAM. INFO 2026-06-08 08:43:19 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 2s. Last read position: chr3:9,662,273 INFO 2026-06-08 08:43:19 MarkDuplicates Tracking 1664772 as yet unmatched pairs. 69571 records in RAM. INFO 2026-06-08 08:43:21 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr3:12,941,689 INFO 2026-06-08 08:43:21 MarkDuplicates Tracking 1661631 as yet unmatched pairs. 66423 records in RAM. INFO 2026-06-08 08:43:23 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr3:30,691,458 INFO 2026-06-08 08:43:23 MarkDuplicates Tracking 1658736 as yet unmatched pairs. 63525 records in RAM. INFO 2026-06-08 08:43:25 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr3:39,407,700 INFO 2026-06-08 08:43:25 MarkDuplicates Tracking 1655897 as yet unmatched pairs. 60672 records in RAM. INFO 2026-06-08 08:43:26 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr3:45,159,788 INFO 2026-06-08 08:43:26 MarkDuplicates Tracking 1653018 as yet unmatched pairs. 57789 records in RAM. INFO 2026-06-08 08:43:28 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr3:47,870,816 INFO 2026-06-08 08:43:28 MarkDuplicates Tracking 1650064 as yet unmatched pairs. 54831 records in RAM. INFO 2026-06-08 08:43:30 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr3:49,012,547 INFO 2026-06-08 08:43:30 MarkDuplicates Tracking 1646935 as yet unmatched pairs. 51701 records in RAM. INFO 2026-06-08 08:43:32 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr3:49,658,008 INFO 2026-06-08 08:43:32 MarkDuplicates Tracking 1643505 as yet unmatched pairs. 48270 records in RAM. INFO 2026-06-08 08:43:33 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr3:51,970,045 INFO 2026-06-08 08:43:33 MarkDuplicates Tracking 1640209 as yet unmatched pairs. 44970 records in RAM. INFO 2026-06-08 08:43:35 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr3:52,790,756 INFO 2026-06-08 08:43:35 MarkDuplicates Tracking 1637177 as yet unmatched pairs. 41937 records in RAM. INFO 2026-06-08 08:43:37 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr3:58,149,875 INFO 2026-06-08 08:43:37 MarkDuplicates Tracking 1634244 as yet unmatched pairs. 39000 records in RAM. INFO 2026-06-08 08:43:38 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr3:78,627,384 INFO 2026-06-08 08:43:38 MarkDuplicates Tracking 1630996 as yet unmatched pairs. 35740 records in RAM. INFO 2026-06-08 08:43:39 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr3:112,609,976 INFO 2026-06-08 08:43:39 MarkDuplicates Tracking 1628229 as yet unmatched pairs. 32964 records in RAM. INFO 2026-06-08 08:43:42 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 2s. Last read position: chr3:123,700,283 INFO 2026-06-08 08:43:42 MarkDuplicates Tracking 1625684 as yet unmatched pairs. 30415 records in RAM. INFO 2026-06-08 08:43:43 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr3:128,052,452 INFO 2026-06-08 08:43:43 MarkDuplicates Tracking 1622103 as yet unmatched pairs. 26826 records in RAM. INFO 2026-06-08 08:43:45 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr3:133,638,106 INFO 2026-06-08 08:43:45 MarkDuplicates Tracking 1618789 as yet unmatched pairs. 23504 records in RAM. INFO 2026-06-08 08:43:46 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr3:141,444,781 INFO 2026-06-08 08:43:46 MarkDuplicates Tracking 1615838 as yet unmatched pairs. 20553 records in RAM. INFO 2026-06-08 08:43:48 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr3:152,835,637 INFO 2026-06-08 08:43:48 MarkDuplicates Tracking 1612847 as yet unmatched pairs. 17559 records in RAM. INFO 2026-06-08 08:43:49 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr3:171,734,895 INFO 2026-06-08 08:43:49 MarkDuplicates Tracking 1610291 as yet unmatched pairs. 14994 records in RAM. INFO 2026-06-08 08:43:51 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr3:184,301,884 INFO 2026-06-08 08:43:51 MarkDuplicates Tracking 1607329 as yet unmatched pairs. 12025 records in RAM. INFO 2026-06-08 08:43:52 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr3:186,675,099 INFO 2026-06-08 08:43:52 MarkDuplicates Tracking 1604363 as yet unmatched pairs. 9055 records in RAM. INFO 2026-06-08 08:43:54 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:194,652,899 INFO 2026-06-08 08:43:54 MarkDuplicates Tracking 1601343 as yet unmatched pairs. 6015 records in RAM. INFO 2026-06-08 08:43:55 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr3:195,781,791 INFO 2026-06-08 08:43:55 MarkDuplicates Tracking 1600171 as yet unmatched pairs. 4840 records in RAM. INFO 2026-06-08 08:43:57 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr3:196,886,093 INFO 2026-06-08 08:43:57 MarkDuplicates Tracking 1597402 as yet unmatched pairs. 2066 records in RAM. INFO 2026-06-08 08:43:59 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 2s. Last read position: chr4:967,026 INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 1594049 as yet unmatched pairs. 46729 records in RAM. INFO 2026-06-08 08:44:01 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr4:2,631,091 INFO 2026-06-08 08:44:01 MarkDuplicates Tracking 1590224 as yet unmatched pairs. 42901 records in RAM. INFO 2026-06-08 08:44:02 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr4:7,772,870 INFO 2026-06-08 08:44:02 MarkDuplicates Tracking 1586879 as yet unmatched pairs. 39548 records in RAM. INFO 2026-06-08 08:44:04 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr4:22,388,380 INFO 2026-06-08 08:44:04 MarkDuplicates Tracking 1583797 as yet unmatched pairs. 36456 records in RAM. INFO 2026-06-08 08:44:05 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr4:40,816,105 INFO 2026-06-08 08:44:05 MarkDuplicates Tracking 1580574 as yet unmatched pairs. 33230 records in RAM. INFO 2026-06-08 08:44:06 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr4:57,031,311 INFO 2026-06-08 08:44:06 MarkDuplicates Tracking 1578586 as yet unmatched pairs. 31221 records in RAM. INFO 2026-06-08 08:44:08 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr4:73,404,372 INFO 2026-06-08 08:44:08 MarkDuplicates Tracking 1575256 as yet unmatched pairs. 27883 records in RAM. INFO 2026-06-08 08:44:10 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 2s. Last read position: chr4:73,415,072 INFO 2026-06-08 08:44:10 MarkDuplicates Tracking 1575791 as yet unmatched pairs. 28418 records in RAM. INFO 2026-06-08 08:44:11 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr4:74,099,081 INFO 2026-06-08 08:44:11 MarkDuplicates Tracking 1568958 as yet unmatched pairs. 21585 records in RAM. INFO 2026-06-08 08:44:13 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr4:84,753,736 INFO 2026-06-08 08:44:13 MarkDuplicates Tracking 1565996 as yet unmatched pairs. 18622 records in RAM. INFO 2026-06-08 08:44:15 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr4:99,311,633 INFO 2026-06-08 08:44:15 MarkDuplicates Tracking 1563389 as yet unmatched pairs. 16011 records in RAM. INFO 2026-06-08 08:44:17 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr4:119,031,730 INFO 2026-06-08 08:44:17 MarkDuplicates Tracking 1560549 as yet unmatched pairs. 13162 records in RAM. INFO 2026-06-08 08:44:18 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr4:145,142,232 INFO 2026-06-08 08:44:18 MarkDuplicates Tracking 1557820 as yet unmatched pairs. 10426 records in RAM. INFO 2026-06-08 08:44:19 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr4:154,566,504 INFO 2026-06-08 08:44:19 MarkDuplicates Tracking 1555650 as yet unmatched pairs. 8246 records in RAM. INFO 2026-06-08 08:44:21 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr4:154,586,507 INFO 2026-06-08 08:44:21 MarkDuplicates Tracking 1553653 as yet unmatched pairs. 6247 records in RAM. INFO 2026-06-08 08:44:22 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr4:173,304,059 INFO 2026-06-08 08:44:22 MarkDuplicates Tracking 1549626 as yet unmatched pairs. 2216 records in RAM. INFO 2026-06-08 08:44:24 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr5:472,957 INFO 2026-06-08 08:44:24 MarkDuplicates Tracking 1546495 as yet unmatched pairs. 74779 records in RAM. INFO 2026-06-08 08:44:26 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr5:482,072 INFO 2026-06-08 08:44:26 MarkDuplicates Tracking 1546134 as yet unmatched pairs. 74417 records in RAM. INFO 2026-06-08 08:44:27 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr5:1,111,871 INFO 2026-06-08 08:44:27 MarkDuplicates Tracking 1537991 as yet unmatched pairs. 66272 records in RAM. INFO 2026-06-08 08:44:29 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr5:14,387,589 INFO 2026-06-08 08:44:29 MarkDuplicates Tracking 1534654 as yet unmatched pairs. 62927 records in RAM. INFO 2026-06-08 08:44:30 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr5:32,242,088 INFO 2026-06-08 08:44:30 MarkDuplicates Tracking 1531304 as yet unmatched pairs. 59573 records in RAM. INFO 2026-06-08 08:44:32 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr5:52,800,418 INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 1528613 as yet unmatched pairs. 56877 records in RAM. INFO 2026-06-08 08:44:34 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 2s. Last read position: chr5:70,938,835 INFO 2026-06-08 08:44:34 MarkDuplicates Tracking 1526408 as yet unmatched pairs. 54664 records in RAM. INFO 2026-06-08 08:44:35 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr5:79,130,931 INFO 2026-06-08 08:44:35 MarkDuplicates Tracking 1523544 as yet unmatched pairs. 51799 records in RAM. INFO 2026-06-08 08:44:37 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr5:91,375,153 INFO 2026-06-08 08:44:37 MarkDuplicates Tracking 1520815 as yet unmatched pairs. 49069 records in RAM. INFO 2026-06-08 08:44:38 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr5:118,973,731 INFO 2026-06-08 08:44:38 MarkDuplicates Tracking 1517947 as yet unmatched pairs. 46191 records in RAM. INFO 2026-06-08 08:44:40 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr5:131,505,512 INFO 2026-06-08 08:44:40 MarkDuplicates Tracking 1514802 as yet unmatched pairs. 43043 records in RAM. INFO 2026-06-08 08:44:41 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr5:134,927,090 INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 1511534 as yet unmatched pairs. 39771 records in RAM. INFO 2026-06-08 08:44:43 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr5:138,924,623 INFO 2026-06-08 08:44:43 MarkDuplicates Tracking 1508878 as yet unmatched pairs. 37111 records in RAM. INFO 2026-06-08 08:44:44 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr5:141,188,729 INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 1506028 as yet unmatched pairs. 33888 records in RAM. INFO 2026-06-08 08:44:45 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr5:141,864,087 INFO 2026-06-08 08:44:45 MarkDuplicates Tracking 1503224 as yet unmatched pairs. 31084 records in RAM. INFO 2026-06-08 08:44:47 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr5:150,118,747 INFO 2026-06-08 08:44:47 MarkDuplicates Tracking 1500472 as yet unmatched pairs. 28330 records in RAM. INFO 2026-06-08 08:44:48 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,237 INFO 2026-06-08 08:44:48 MarkDuplicates Tracking 1502085 as yet unmatched pairs. 29941 records in RAM. INFO 2026-06-08 08:44:50 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr5:150,412,658 INFO 2026-06-08 08:44:50 MarkDuplicates Tracking 1493292 as yet unmatched pairs. 21148 records in RAM. INFO 2026-06-08 08:44:52 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr5:151,795,496 INFO 2026-06-08 08:44:52 MarkDuplicates Tracking 1490503 as yet unmatched pairs. 18359 records in RAM. INFO 2026-06-08 08:44:54 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 2s. Last read position: chr5:169,654,413 INFO 2026-06-08 08:44:54 MarkDuplicates Tracking 1487598 as yet unmatched pairs. 15447 records in RAM. INFO 2026-06-08 08:44:56 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr5:175,964,930 INFO 2026-06-08 08:44:56 MarkDuplicates Tracking 1484862 as yet unmatched pairs. 12706 records in RAM. INFO 2026-06-08 08:44:57 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr5:177,524,348 INFO 2026-06-08 08:44:57 MarkDuplicates Tracking 1481562 as yet unmatched pairs. 9401 records in RAM. INFO 2026-06-08 08:44:58 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr5:179,765,969 INFO 2026-06-08 08:44:58 MarkDuplicates Tracking 1478195 as yet unmatched pairs. 6034 records in RAM. INFO 2026-06-08 08:45:00 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr5:179,833,745 INFO 2026-06-08 08:45:00 MarkDuplicates Tracking 1475677 as yet unmatched pairs. 3516 records in RAM. INFO 2026-06-08 08:45:02 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 2s. Last read position: chr6:1,726,445 INFO 2026-06-08 08:45:02 MarkDuplicates Tracking 1471749 as yet unmatched pairs. 88743 records in RAM. INFO 2026-06-08 08:45:03 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr6:7,246,876 INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 1468449 as yet unmatched pairs. 85441 records in RAM. INFO 2026-06-08 08:45:05 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr6:16,141,640 INFO 2026-06-08 08:45:05 MarkDuplicates Tracking 1465433 as yet unmatched pairs. 82423 records in RAM. INFO 2026-06-08 08:45:06 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr6:26,123,498 INFO 2026-06-08 08:45:06 MarkDuplicates Tracking 1462596 as yet unmatched pairs. 79568 records in RAM. INFO 2026-06-08 08:45:08 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr6:27,146,678 INFO 2026-06-08 08:45:08 MarkDuplicates Tracking 1459230 as yet unmatched pairs. 76201 records in RAM. INFO 2026-06-08 08:45:09 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr6:29,942,787 INFO 2026-06-08 08:45:09 MarkDuplicates Tracking 1456493 as yet unmatched pairs. 73463 records in RAM. INFO 2026-06-08 08:45:10 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr6:30,685,093 INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 1453485 as yet unmatched pairs. 70454 records in RAM. INFO 2026-06-08 08:45:12 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr6:31,271,849 INFO 2026-06-08 08:45:12 MarkDuplicates Tracking 1450831 as yet unmatched pairs. 67800 records in RAM. INFO 2026-06-08 08:45:13 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr6:31,644,175 INFO 2026-06-08 08:45:13 MarkDuplicates Tracking 1448129 as yet unmatched pairs. 65097 records in RAM. INFO 2026-06-08 08:45:15 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr6:31,816,859 INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 1445114 as yet unmatched pairs. 62081 records in RAM. INFO 2026-06-08 08:45:16 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr6:31,889,243 INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 1442425 as yet unmatched pairs. 59391 records in RAM. INFO 2026-06-08 08:45:17 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr6:32,009,782 INFO 2026-06-08 08:45:17 MarkDuplicates Tracking 1441373 as yet unmatched pairs. 58338 records in RAM. INFO 2026-06-08 08:45:19 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr6:32,439,927 INFO 2026-06-08 08:45:19 MarkDuplicates Tracking 1438090 as yet unmatched pairs. 55054 records in RAM. INFO 2026-06-08 08:45:21 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr6:33,302,667 INFO 2026-06-08 08:45:21 MarkDuplicates Tracking 1435397 as yet unmatched pairs. 52360 records in RAM. INFO 2026-06-08 08:45:23 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 2s. Last read position: chr6:33,685,475 INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 1431735 as yet unmatched pairs. 48698 records in RAM. INFO 2026-06-08 08:45:24 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr6:36,211,408 INFO 2026-06-08 08:45:24 MarkDuplicates Tracking 1428485 as yet unmatched pairs. 45439 records in RAM. INFO 2026-06-08 08:45:26 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 2s. Last read position: chr6:42,564,333 INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 1425161 as yet unmatched pairs. 42113 records in RAM. INFO 2026-06-08 08:45:28 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr6:43,539,627 INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 1421717 as yet unmatched pairs. 38666 records in RAM. INFO 2026-06-08 08:45:30 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr6:44,254,722 INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 1418402 as yet unmatched pairs. 35350 records in RAM. INFO 2026-06-08 08:45:31 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr6:57,182,117 INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 1415673 as yet unmatched pairs. 32615 records in RAM. INFO 2026-06-08 08:45:32 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr6:85,614,997 INFO 2026-06-08 08:45:32 MarkDuplicates Tracking 1413198 as yet unmatched pairs. 30135 records in RAM. INFO 2026-06-08 08:45:34 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr6:106,971,441 INFO 2026-06-08 08:45:34 MarkDuplicates Tracking 1411043 as yet unmatched pairs. 27971 records in RAM. INFO 2026-06-08 08:45:35 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr6:113,859,884 INFO 2026-06-08 08:45:35 MarkDuplicates Tracking 1407285 as yet unmatched pairs. 24194 records in RAM. INFO 2026-06-08 08:45:36 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr6:129,291,667 INFO 2026-06-08 08:45:36 MarkDuplicates Tracking 1404222 as yet unmatched pairs. 21128 records in RAM. INFO 2026-06-08 08:45:38 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr6:135,201,700 INFO 2026-06-08 08:45:38 MarkDuplicates Tracking 1402222 as yet unmatched pairs. 19126 records in RAM. INFO 2026-06-08 08:45:39 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr6:143,502,487 INFO 2026-06-08 08:45:39 MarkDuplicates Tracking 1398505 as yet unmatched pairs. 15404 records in RAM. INFO 2026-06-08 08:45:41 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr6:154,406,320 INFO 2026-06-08 08:45:41 MarkDuplicates Tracking 1395625 as yet unmatched pairs. 12519 records in RAM. INFO 2026-06-08 08:45:42 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr6:158,769,813 INFO 2026-06-08 08:45:42 MarkDuplicates Tracking 1392601 as yet unmatched pairs. 9491 records in RAM. INFO 2026-06-08 08:45:44 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr6:160,056,423 INFO 2026-06-08 08:45:44 MarkDuplicates Tracking 1389263 as yet unmatched pairs. 6152 records in RAM. INFO 2026-06-08 08:45:45 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr6:167,962,491 INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 1386568 as yet unmatched pairs. 3451 records in RAM. INFO 2026-06-08 08:45:46 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr6:170,318,465 INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 1383583 as yet unmatched pairs. 460 records in RAM. INFO 2026-06-08 08:45:49 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 2s. Last read position: chr7:988,378 INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 1381959 as yet unmatched pairs. 138265 records in RAM. INFO 2026-06-08 08:45:50 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr7:2,543,198 INFO 2026-06-08 08:45:50 MarkDuplicates Tracking 1375600 as yet unmatched pairs. 131900 records in RAM. INFO 2026-06-08 08:45:52 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr7:5,370,667 INFO 2026-06-08 08:45:52 MarkDuplicates Tracking 1372339 as yet unmatched pairs. 128637 records in RAM. INFO 2026-06-08 08:45:53 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,118 INFO 2026-06-08 08:45:53 MarkDuplicates Tracking 1370930 as yet unmatched pairs. 127227 records in RAM. INFO 2026-06-08 08:45:56 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 2s. Last read position: chr7:5,623,007 INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 1364809 as yet unmatched pairs. 121100 records in RAM. INFO 2026-06-08 08:45:57 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr7:23,513,065 INFO 2026-06-08 08:45:57 MarkDuplicates Tracking 1361839 as yet unmatched pairs. 118124 records in RAM. INFO 2026-06-08 08:45:59 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 2s. Last read position: chr7:33,000,174 INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 1358723 as yet unmatched pairs. 115003 records in RAM. INFO 2026-06-08 08:46:01 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr7:44,106,655 INFO 2026-06-08 08:46:01 MarkDuplicates Tracking 1355537 as yet unmatched pairs. 111814 records in RAM. INFO 2026-06-08 08:46:03 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr7:44,766,445 INFO 2026-06-08 08:46:03 MarkDuplicates Tracking 1352446 as yet unmatched pairs. 108721 records in RAM. INFO 2026-06-08 08:46:04 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr7:55,205,400 INFO 2026-06-08 08:46:04 MarkDuplicates Tracking 1349001 as yet unmatched pairs. 105271 records in RAM. INFO 2026-06-08 08:46:05 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr7:72,807,103 INFO 2026-06-08 08:46:05 MarkDuplicates Tracking 1346196 as yet unmatched pairs. 102454 records in RAM. INFO 2026-06-08 08:46:07 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr7:73,605,726 INFO 2026-06-08 08:46:07 MarkDuplicates Tracking 1344630 as yet unmatched pairs. 100886 records in RAM. INFO 2026-06-08 08:46:08 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr7:74,590,945 INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 1340692 as yet unmatched pairs. 96946 records in RAM. INFO 2026-06-08 08:46:09 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr7:75,987,271 INFO 2026-06-08 08:46:09 MarkDuplicates Tracking 1338422 as yet unmatched pairs. 94675 records in RAM. INFO 2026-06-08 08:46:11 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr7:76,434,095 INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 1334834 as yet unmatched pairs. 91069 records in RAM. INFO 2026-06-08 08:46:12 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr7:92,042,728 INFO 2026-06-08 08:46:12 MarkDuplicates Tracking 1332318 as yet unmatched pairs. 88552 records in RAM. INFO 2026-06-08 08:46:14 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr7:94,411,055 INFO 2026-06-08 08:46:14 MarkDuplicates Tracking 1330087 as yet unmatched pairs. 86319 records in RAM. INFO 2026-06-08 08:46:15 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr7:98,107,110 INFO 2026-06-08 08:46:15 MarkDuplicates Tracking 1326050 as yet unmatched pairs. 82276 records in RAM. INFO 2026-06-08 08:46:17 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr7:99,669,102 INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 1322863 as yet unmatched pairs. 79087 records in RAM. INFO 2026-06-08 08:46:18 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr7:100,399,792 INFO 2026-06-08 08:46:18 MarkDuplicates Tracking 1319712 as yet unmatched pairs. 75936 records in RAM. INFO 2026-06-08 08:46:20 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr7:100,882,049 INFO 2026-06-08 08:46:20 MarkDuplicates Tracking 1316135 as yet unmatched pairs. 72354 records in RAM. INFO 2026-06-08 08:46:21 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr7:100,991,975 INFO 2026-06-08 08:46:21 MarkDuplicates Tracking 1315850 as yet unmatched pairs. 72068 records in RAM. INFO 2026-06-08 08:46:22 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr7:100,992,599 INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 1313247 as yet unmatched pairs. 69465 records in RAM. INFO 2026-06-08 08:46:24 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr7:100,992,929 INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 1312783 as yet unmatched pairs. 69000 records in RAM. INFO 2026-06-08 08:46:25 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,168 INFO 2026-06-08 08:46:25 MarkDuplicates Tracking 1309803 as yet unmatched pairs. 66020 records in RAM. INFO 2026-06-08 08:46:26 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 0s. Last read position: chr7:100,993,602 INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 1309642 as yet unmatched pairs. 65858 records in RAM. INFO 2026-06-08 08:46:27 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,883 INFO 2026-06-08 08:46:27 MarkDuplicates Tracking 1310196 as yet unmatched pairs. 66412 records in RAM. INFO 2026-06-08 08:46:28 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,200 INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 1308193 as yet unmatched pairs. 64409 records in RAM. INFO 2026-06-08 08:46:29 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,742 INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 1307676 as yet unmatched pairs. 63892 records in RAM. INFO 2026-06-08 08:46:30 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 0s. Last read position: chr7:100,995,020 INFO 2026-06-08 08:46:30 MarkDuplicates Tracking 1307696 as yet unmatched pairs. 63912 records in RAM. INFO 2026-06-08 08:46:31 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 0s. Last read position: chr7:100,995,264 INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 1308763 as yet unmatched pairs. 64979 records in RAM. INFO 2026-06-08 08:46:32 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,696 INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 1309488 as yet unmatched pairs. 65704 records in RAM. INFO 2026-06-08 08:46:33 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,061 INFO 2026-06-08 08:46:33 MarkDuplicates Tracking 1306421 as yet unmatched pairs. 62636 records in RAM. INFO 2026-06-08 08:46:35 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,265 INFO 2026-06-08 08:46:35 MarkDuplicates Tracking 1306788 as yet unmatched pairs. 62993 records in RAM. INFO 2026-06-08 08:46:36 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,379 INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 1314630 as yet unmatched pairs. 70835 records in RAM. INFO 2026-06-08 08:46:37 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,501 INFO 2026-06-08 08:46:37 MarkDuplicates Tracking 1306572 as yet unmatched pairs. 62777 records in RAM. INFO 2026-06-08 08:46:39 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,751 INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 1307179 as yet unmatched pairs. 63384 records in RAM. INFO 2026-06-08 08:46:40 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,890 INFO 2026-06-08 08:46:40 MarkDuplicates Tracking 1308313 as yet unmatched pairs. 64518 records in RAM. INFO 2026-06-08 08:46:41 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,161 INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 1306104 as yet unmatched pairs. 62309 records in RAM. INFO 2026-06-08 08:46:43 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,408 INFO 2026-06-08 08:46:43 MarkDuplicates Tracking 1302981 as yet unmatched pairs. 59186 records in RAM. INFO 2026-06-08 08:46:45 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,575 INFO 2026-06-08 08:46:45 MarkDuplicates Tracking 1299425 as yet unmatched pairs. 55629 records in RAM. INFO 2026-06-08 08:46:46 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,846 INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 1296220 as yet unmatched pairs. 52424 records in RAM. INFO 2026-06-08 08:46:47 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 0s. Last read position: chr7:100,997,990 INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 1300851 as yet unmatched pairs. 57055 records in RAM. INFO 2026-06-08 08:46:48 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 0s. Last read position: chr7:100,998,233 INFO 2026-06-08 08:46:48 MarkDuplicates Tracking 1294653 as yet unmatched pairs. 50857 records in RAM. INFO 2026-06-08 08:46:49 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 0s. Last read position: chr7:100,998,489 INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 1294663 as yet unmatched pairs. 50867 records in RAM. INFO 2026-06-08 08:46:50 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 0s. Last read position: chr7:100,998,668 INFO 2026-06-08 08:46:50 MarkDuplicates Tracking 1302528 as yet unmatched pairs. 58732 records in RAM. INFO 2026-06-08 08:46:51 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,848 INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 1293276 as yet unmatched pairs. 49480 records in RAM. INFO 2026-06-08 08:46:52 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 0s. Last read position: chr7:100,999,010 INFO 2026-06-08 08:46:52 MarkDuplicates Tracking 1293400 as yet unmatched pairs. 49604 records in RAM. INFO 2026-06-08 08:46:53 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,428 INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 1296037 as yet unmatched pairs. 52241 records in RAM. INFO 2026-06-08 08:46:54 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,709 INFO 2026-06-08 08:46:54 MarkDuplicates Tracking 1291692 as yet unmatched pairs. 47896 records in RAM. INFO 2026-06-08 08:46:55 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,941 INFO 2026-06-08 08:46:55 MarkDuplicates Tracking 1294638 as yet unmatched pairs. 50842 records in RAM. INFO 2026-06-08 08:46:56 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,149 INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 1292846 as yet unmatched pairs. 49049 records in RAM. INFO 2026-06-08 08:46:57 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,402 INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 1295945 as yet unmatched pairs. 52138 records in RAM. INFO 2026-06-08 08:46:59 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,663 INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 1287954 as yet unmatched pairs. 44147 records in RAM. INFO 2026-06-08 08:47:00 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,860 INFO 2026-06-08 08:47:00 MarkDuplicates Tracking 1289965 as yet unmatched pairs. 46158 records in RAM. INFO 2026-06-08 08:47:01 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,005 INFO 2026-06-08 08:47:01 MarkDuplicates Tracking 1288083 as yet unmatched pairs. 44275 records in RAM. INFO 2026-06-08 08:47:02 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,292 INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 1287741 as yet unmatched pairs. 43932 records in RAM. INFO 2026-06-08 08:47:03 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,436 INFO 2026-06-08 08:47:03 MarkDuplicates Tracking 1281240 as yet unmatched pairs. 37430 records in RAM. INFO 2026-06-08 08:47:04 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,584 INFO 2026-06-08 08:47:04 MarkDuplicates Tracking 1281206 as yet unmatched pairs. 37396 records in RAM. INFO 2026-06-08 08:47:06 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,855 INFO 2026-06-08 08:47:06 MarkDuplicates Tracking 1282950 as yet unmatched pairs. 39140 records in RAM. INFO 2026-06-08 08:47:07 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,144 INFO 2026-06-08 08:47:07 MarkDuplicates Tracking 1281042 as yet unmatched pairs. 37232 records in RAM. INFO 2026-06-08 08:47:08 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,410 INFO 2026-06-08 08:47:08 MarkDuplicates Tracking 1282835 as yet unmatched pairs. 39025 records in RAM. INFO 2026-06-08 08:47:09 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,889 INFO 2026-06-08 08:47:09 MarkDuplicates Tracking 1285366 as yet unmatched pairs. 41555 records in RAM. INFO 2026-06-08 08:47:10 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,351 INFO 2026-06-08 08:47:10 MarkDuplicates Tracking 1277146 as yet unmatched pairs. 33335 records in RAM. INFO 2026-06-08 08:47:12 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,907 INFO 2026-06-08 08:47:12 MarkDuplicates Tracking 1275712 as yet unmatched pairs. 31901 records in RAM. INFO 2026-06-08 08:47:13 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:101,004,118 INFO 2026-06-08 08:47:13 MarkDuplicates Tracking 1275622 as yet unmatched pairs. 31811 records in RAM. INFO 2026-06-08 08:47:14 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:101,163,214 INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 1273377 as yet unmatched pairs. 29564 records in RAM. INFO 2026-06-08 08:47:16 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:102,587,757 INFO 2026-06-08 08:47:16 MarkDuplicates Tracking 1271297 as yet unmatched pairs. 27478 records in RAM. INFO 2026-06-08 08:47:18 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 2s. Last read position: chr7:107,793,767 INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 1269088 as yet unmatched pairs. 25259 records in RAM. INFO 2026-06-08 08:47:20 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:127,243,152 INFO 2026-06-08 08:47:20 MarkDuplicates Tracking 1266262 as yet unmatched pairs. 22423 records in RAM. INFO 2026-06-08 08:47:21 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr7:128,089,645 INFO 2026-06-08 08:47:21 MarkDuplicates Tracking 1264250 as yet unmatched pairs. 20411 records in RAM. INFO 2026-06-08 08:47:23 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:135,576,269 INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 1260656 as yet unmatched pairs. 16808 records in RAM. INFO 2026-06-08 08:47:24 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:140,127,504 INFO 2026-06-08 08:47:24 MarkDuplicates Tracking 1257319 as yet unmatched pairs. 13469 records in RAM. INFO 2026-06-08 08:47:26 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:144,187,180 INFO 2026-06-08 08:47:26 MarkDuplicates Tracking 1254311 as yet unmatched pairs. 10458 records in RAM. INFO 2026-06-08 08:47:27 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:149,198,587 INFO 2026-06-08 08:47:27 MarkDuplicates Tracking 1252582 as yet unmatched pairs. 8729 records in RAM. INFO 2026-06-08 08:47:28 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:151,071,087 INFO 2026-06-08 08:47:28 MarkDuplicates Tracking 1248838 as yet unmatched pairs. 4981 records in RAM. INFO 2026-06-08 08:47:30 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:155,800,021 INFO 2026-06-08 08:47:30 MarkDuplicates Tracking 1245342 as yet unmatched pairs. 1481 records in RAM. INFO 2026-06-08 08:47:31 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr8:11,809,795 INFO 2026-06-08 08:47:31 MarkDuplicates Tracking 1242420 as yet unmatched pairs. 66019 records in RAM. INFO 2026-06-08 08:47:33 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr8:22,138,981 INFO 2026-06-08 08:47:33 MarkDuplicates Tracking 1239228 as yet unmatched pairs. 62826 records in RAM. INFO 2026-06-08 08:47:34 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr8:26,627,887 INFO 2026-06-08 08:47:34 MarkDuplicates Tracking 1236295 as yet unmatched pairs. 59891 records in RAM. INFO 2026-06-08 08:47:36 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr8:37,697,143 INFO 2026-06-08 08:47:36 MarkDuplicates Tracking 1233958 as yet unmatched pairs. 57546 records in RAM. INFO 2026-06-08 08:47:37 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr8:37,841,840 INFO 2026-06-08 08:47:37 MarkDuplicates Tracking 1228661 as yet unmatched pairs. 52248 records in RAM. INFO 2026-06-08 08:47:39 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr8:41,933,660 INFO 2026-06-08 08:47:39 MarkDuplicates Tracking 1225771 as yet unmatched pairs. 49355 records in RAM. INFO 2026-06-08 08:47:40 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr8:60,741,726 INFO 2026-06-08 08:47:40 MarkDuplicates Tracking 1222682 as yet unmatched pairs. 46251 records in RAM. INFO 2026-06-08 08:47:41 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr8:73,009,052 INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 1220399 as yet unmatched pairs. 43961 records in RAM. INFO 2026-06-08 08:47:43 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr8:96,231,896 INFO 2026-06-08 08:47:43 MarkDuplicates Tracking 1217574 as yet unmatched pairs. 41134 records in RAM. INFO 2026-06-08 08:47:44 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr8:100,948,630 INFO 2026-06-08 08:47:44 MarkDuplicates Tracking 1214772 as yet unmatched pairs. 38330 records in RAM. INFO 2026-06-08 08:48:51 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 66s. Last read position: chr8:120,332,688 INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 1211835 as yet unmatched pairs. 35390 records in RAM. INFO 2026-06-08 08:48:53 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,899 INFO 2026-06-08 08:48:53 MarkDuplicates Tracking 1208790 as yet unmatched pairs. 32339 records in RAM. INFO 2026-06-08 08:48:55 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr8:141,189,123 INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 1205407 as yet unmatched pairs. 28952 records in RAM. INFO 2026-06-08 08:48:57 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr8:143,730,519 INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 1201470 as yet unmatched pairs. 25007 records in RAM. INFO 2026-06-08 08:48:58 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,686 INFO 2026-06-08 08:48:58 MarkDuplicates Tracking 1199995 as yet unmatched pairs. 23532 records in RAM. INFO 2026-06-08 08:49:00 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,339 INFO 2026-06-08 08:49:00 MarkDuplicates Tracking 1199041 as yet unmatched pairs. 22578 records in RAM. INFO 2026-06-08 08:49:01 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,608 INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 1198008 as yet unmatched pairs. 21545 records in RAM. INFO 2026-06-08 08:49:02 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,058 INFO 2026-06-08 08:49:02 MarkDuplicates Tracking 1197124 as yet unmatched pairs. 20661 records in RAM. INFO 2026-06-08 08:49:03 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,459 INFO 2026-06-08 08:49:03 MarkDuplicates Tracking 1194235 as yet unmatched pairs. 17772 records in RAM. INFO 2026-06-08 08:49:04 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,714 INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 1193593 as yet unmatched pairs. 17129 records in RAM. INFO 2026-06-08 08:49:05 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr8:143,869,796 INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 1192752 as yet unmatched pairs. 16288 records in RAM. INFO 2026-06-08 08:49:07 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr8:143,923,909 INFO 2026-06-08 08:49:07 MarkDuplicates Tracking 1188327 as yet unmatched pairs. 11859 records in RAM. INFO 2026-06-08 08:49:08 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr8:144,096,238 INFO 2026-06-08 08:49:08 MarkDuplicates Tracking 1183745 as yet unmatched pairs. 7274 records in RAM. INFO 2026-06-08 08:49:10 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr8:144,398,967 INFO 2026-06-08 08:49:10 MarkDuplicates Tracking 1180197 as yet unmatched pairs. 3720 records in RAM. INFO 2026-06-08 08:49:12 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr9:175,708 INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 1176467 as yet unmatched pairs. 80215 records in RAM. INFO 2026-06-08 08:49:13 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr9:14,155,866 INFO 2026-06-08 08:49:13 MarkDuplicates Tracking 1173892 as yet unmatched pairs. 77633 records in RAM. INFO 2026-06-08 08:49:15 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr9:33,038,703 INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 1170975 as yet unmatched pairs. 74711 records in RAM. INFO 2026-06-08 08:49:17 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 2s. Last read position: chr9:35,092,219 INFO 2026-06-08 08:49:17 MarkDuplicates Tracking 1167703 as yet unmatched pairs. 71435 records in RAM. INFO 2026-06-08 08:49:19 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr9:36,344,937 INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 1164523 as yet unmatched pairs. 68253 records in RAM. INFO 2026-06-08 08:49:21 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr9:69,734,191 INFO 2026-06-08 08:49:21 MarkDuplicates Tracking 1161895 as yet unmatched pairs. 65548 records in RAM. INFO 2026-06-08 08:49:22 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr9:83,972,963 INFO 2026-06-08 08:49:22 MarkDuplicates Tracking 1159379 as yet unmatched pairs. 63030 records in RAM. INFO 2026-06-08 08:49:24 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr9:92,611,327 INFO 2026-06-08 08:49:24 MarkDuplicates Tracking 1156116 as yet unmatched pairs. 59766 records in RAM. INFO 2026-06-08 08:49:25 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr9:93,564,226 INFO 2026-06-08 08:49:25 MarkDuplicates Tracking 1152654 as yet unmatched pairs. 56304 records in RAM. INFO 2026-06-08 08:49:27 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr9:99,038,705 INFO 2026-06-08 08:49:27 MarkDuplicates Tracking 1149584 as yet unmatched pairs. 53225 records in RAM. INFO 2026-06-08 08:49:28 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr9:107,488,250 INFO 2026-06-08 08:49:28 MarkDuplicates Tracking 1146620 as yet unmatched pairs. 50259 records in RAM. INFO 2026-06-08 08:49:29 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 1s. Last read position: chr9:113,369,974 INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 1143625 as yet unmatched pairs. 47263 records in RAM. INFO 2026-06-08 08:49:31 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr9:114,376,662 INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 1140816 as yet unmatched pairs. 44451 records in RAM. INFO 2026-06-08 08:49:32 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr9:122,265,752 INFO 2026-06-08 08:49:32 MarkDuplicates Tracking 1137596 as yet unmatched pairs. 41230 records in RAM. INFO 2026-06-08 08:49:34 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr9:127,447,881 INFO 2026-06-08 08:49:34 MarkDuplicates Tracking 1135122 as yet unmatched pairs. 38743 records in RAM. INFO 2026-06-08 08:49:35 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr9:128,169,500 INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 1131358 as yet unmatched pairs. 34979 records in RAM. INFO 2026-06-08 08:49:37 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr9:128,828,752 INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 1127404 as yet unmatched pairs. 31023 records in RAM. INFO 2026-06-08 08:49:38 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr9:130,854,210 INFO 2026-06-08 08:49:38 MarkDuplicates Tracking 1124250 as yet unmatched pairs. 27862 records in RAM. INFO 2026-06-08 08:49:40 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr9:131,491,468 INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 1121261 as yet unmatched pairs. 24872 records in RAM. INFO 2026-06-08 08:49:41 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr9:133,455,957 INFO 2026-06-08 08:49:41 MarkDuplicates Tracking 1118220 as yet unmatched pairs. 21828 records in RAM. INFO 2026-06-08 08:49:43 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr9:134,763,712 INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 1115274 as yet unmatched pairs. 18879 records in RAM. INFO 2026-06-08 08:49:45 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr9:136,407,845 INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 1111239 as yet unmatched pairs. 14844 records in RAM. INFO 2026-06-08 08:49:47 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr9:136,519,503 INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 1107856 as yet unmatched pairs. 11452 records in RAM. INFO 2026-06-08 08:49:48 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr9:136,941,404 INFO 2026-06-08 08:49:48 MarkDuplicates Tracking 1104045 as yet unmatched pairs. 7640 records in RAM. INFO 2026-06-08 08:49:50 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr9:137,215,732 INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 1099904 as yet unmatched pairs. 3496 records in RAM. INFO 2026-06-08 08:49:51 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr10:812,922 INFO 2026-06-08 08:49:51 MarkDuplicates Tracking 1096195 as yet unmatched pairs. 61698 records in RAM. INFO 2026-06-08 08:49:53 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr10:7,799,015 INFO 2026-06-08 08:49:53 MarkDuplicates Tracking 1093270 as yet unmatched pairs. 58772 records in RAM. INFO 2026-06-08 08:49:54 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr10:21,673,364 INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 1089984 as yet unmatched pairs. 55465 records in RAM. INFO 2026-06-08 08:49:56 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr10:30,447,879 INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 1087355 as yet unmatched pairs. 52833 records in RAM. INFO 2026-06-08 08:49:57 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr10:37,602,197 INFO 2026-06-08 08:49:57 MarkDuplicates Tracking 1084875 as yet unmatched pairs. 50345 records in RAM. INFO 2026-06-08 08:49:59 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr10:46,837,276 INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 1082305 as yet unmatched pairs. 47775 records in RAM. INFO 2026-06-08 08:50:01 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 2s. Last read position: chr10:60,196,145 INFO 2026-06-08 08:50:01 MarkDuplicates Tracking 1079735 as yet unmatched pairs. 45193 records in RAM. INFO 2026-06-08 08:50:03 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr10:70,885,194 INFO 2026-06-08 08:50:03 MarkDuplicates Tracking 1076890 as yet unmatched pairs. 42347 records in RAM. INFO 2026-06-08 08:50:04 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr10:74,082,510 INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 1073604 as yet unmatched pairs. 39061 records in RAM. INFO 2026-06-08 08:50:05 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr10:79,445,344 INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 1070543 as yet unmatched pairs. 35997 records in RAM. INFO 2026-06-08 08:50:07 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr10:87,232,643 INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 1067777 as yet unmatched pairs. 33229 records in RAM. INFO 2026-06-08 08:50:08 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr10:94,032,162 INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 1064710 as yet unmatched pairs. 30159 records in RAM. INFO 2026-06-08 08:50:10 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr10:96,981,270 INFO 2026-06-08 08:50:10 MarkDuplicates Tracking 1061985 as yet unmatched pairs. 27430 records in RAM. INFO 2026-06-08 08:50:11 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr10:100,529,443 INFO 2026-06-08 08:50:11 MarkDuplicates Tracking 1058890 as yet unmatched pairs. 24333 records in RAM. INFO 2026-06-08 08:50:12 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr10:102,401,303 INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 1055835 as yet unmatched pairs. 21276 records in RAM. INFO 2026-06-08 08:50:14 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr10:111,009,343 INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 1052780 as yet unmatched pairs. 18217 records in RAM. INFO 2026-06-08 08:50:16 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr10:119,030,370 INFO 2026-06-08 08:50:16 MarkDuplicates Tracking 1049661 as yet unmatched pairs. 15097 records in RAM. INFO 2026-06-08 08:50:18 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 2s. Last read position: chr10:122,211,223 INFO 2026-06-08 08:50:18 MarkDuplicates Tracking 1047108 as yet unmatched pairs. 12544 records in RAM. INFO 2026-06-08 08:50:19 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr10:122,586,208 INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 1046616 as yet unmatched pairs. 12052 records in RAM. INFO 2026-06-08 08:50:20 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr10:122,601,986 INFO 2026-06-08 08:50:20 MarkDuplicates Tracking 1043429 as yet unmatched pairs. 8865 records in RAM. INFO 2026-06-08 08:50:22 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr10:122,614,041 INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 1042193 as yet unmatched pairs. 7629 records in RAM. INFO 2026-06-08 08:50:23 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr10:124,989,514 INFO 2026-06-08 08:50:23 MarkDuplicates Tracking 1039660 as yet unmatched pairs. 5094 records in RAM. INFO 2026-06-08 08:50:24 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr10:133,271,046 INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 1036422 as yet unmatched pairs. 1844 records in RAM. INFO 2026-06-08 08:50:27 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 2s. Last read position: chr11:319,925 INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 1034892 as yet unmatched pairs. 107799 records in RAM. INFO 2026-06-08 08:50:28 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr11:722,672 INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 1029892 as yet unmatched pairs. 102787 records in RAM. INFO 2026-06-08 08:50:30 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 2s. Last read position: chr11:1,754,110 INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 1026637 as yet unmatched pairs. 99528 records in RAM. INFO 2026-06-08 08:50:32 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr11:3,827,544 INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 1022213 as yet unmatched pairs. 95101 records in RAM. INFO 2026-06-08 08:50:34 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr11:8,750,639 INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 1019040 as yet unmatched pairs. 91927 records in RAM. INFO 2026-06-08 08:50:35 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr11:16,974,896 INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 1016089 as yet unmatched pairs. 88969 records in RAM. INFO 2026-06-08 08:50:37 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr11:34,130,825 INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 1013530 as yet unmatched pairs. 86405 records in RAM. INFO 2026-06-08 08:50:38 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr11:46,397,795 INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 1010300 as yet unmatched pairs. 83168 records in RAM. INFO 2026-06-08 08:50:39 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr11:57,302,151 INFO 2026-06-08 08:50:39 MarkDuplicates Tracking 1007427 as yet unmatched pairs. 80295 records in RAM. INFO 2026-06-08 08:50:41 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr11:58,579,442 INFO 2026-06-08 08:50:41 MarkDuplicates Tracking 1004566 as yet unmatched pairs. 77431 records in RAM. INFO 2026-06-08 08:50:43 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr11:61,533,021 INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 1001426 as yet unmatched pairs. 74266 records in RAM. INFO 2026-06-08 08:50:45 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr11:62,518,778 INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 998475 as yet unmatched pairs. 71314 records in RAM. INFO 2026-06-08 08:50:46 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr11:62,571,647 INFO 2026-06-08 08:50:46 MarkDuplicates Tracking 996456 as yet unmatched pairs. 69295 records in RAM. INFO 2026-06-08 08:50:48 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr11:63,544,842 INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 992564 as yet unmatched pairs. 65401 records in RAM. INFO 2026-06-08 08:50:49 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr11:64,305,655 INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 989236 as yet unmatched pairs. 62073 records in RAM. INFO 2026-06-08 08:50:51 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr11:64,790,188 INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 984922 as yet unmatched pairs. 57759 records in RAM. INFO 2026-06-08 08:50:52 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr11:65,289,845 INFO 2026-06-08 08:50:52 MarkDuplicates Tracking 980996 as yet unmatched pairs. 53833 records in RAM. INFO 2026-06-08 08:50:54 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr11:65,655,700 INFO 2026-06-08 08:50:54 MarkDuplicates Tracking 978407 as yet unmatched pairs. 51241 records in RAM. INFO 2026-06-08 08:50:56 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 2s. Last read position: chr11:66,235,316 INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 974273 as yet unmatched pairs. 47105 records in RAM. INFO 2026-06-08 08:50:58 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 2s. Last read position: chr11:67,250,446 INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 970674 as yet unmatched pairs. 43506 records in RAM. INFO 2026-06-08 08:50:59 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:68,003,997 INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 967001 as yet unmatched pairs. 39832 records in RAM. INFO 2026-06-08 08:51:00 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr11:68,892,484 INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 964206 as yet unmatched pairs. 37035 records in RAM. INFO 2026-06-08 08:51:02 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:72,003,425 INFO 2026-06-08 08:51:02 MarkDuplicates Tracking 961491 as yet unmatched pairs. 34319 records in RAM. INFO 2026-06-08 08:51:03 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr11:72,726,821 INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 957668 as yet unmatched pairs. 30495 records in RAM. INFO 2026-06-08 08:51:05 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr11:75,449,031 INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 954516 as yet unmatched pairs. 27341 records in RAM. INFO 2026-06-08 08:51:06 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:85,663,973 INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 951493 as yet unmatched pairs. 24317 records in RAM. INFO 2026-06-08 08:51:08 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr11:102,110,840 INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 948413 as yet unmatched pairs. 21231 records in RAM. INFO 2026-06-08 08:51:10 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:114,059,666 INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 945077 as yet unmatched pairs. 17890 records in RAM. INFO 2026-06-08 08:51:12 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 2s. Last read position: chr11:116,836,378 INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 944399 as yet unmatched pairs. 17211 records in RAM. INFO 2026-06-08 08:51:13 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:118,409,016 INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 939185 as yet unmatched pairs. 11997 records in RAM. INFO 2026-06-08 08:51:15 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:119,110,130 INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 936147 as yet unmatched pairs. 8959 records in RAM. INFO 2026-06-08 08:51:16 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr11:124,123,690 INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 933100 as yet unmatched pairs. 5912 records in RAM. INFO 2026-06-08 08:51:18 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:130,159,948 INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 930266 as yet unmatched pairs. 3071 records in RAM. INFO 2026-06-08 08:51:20 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 2s. Last read position: chr12:753,589 INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 926755 as yet unmatched pairs. 86703 records in RAM. INFO 2026-06-08 08:51:21 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr12:6,232,659 INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 924550 as yet unmatched pairs. 84498 records in RAM. INFO 2026-06-08 08:51:23 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr12:6,598,060 INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 920371 as yet unmatched pairs. 80318 records in RAM. INFO 2026-06-08 08:51:25 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr12:7,061,847 INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 917433 as yet unmatched pairs. 77379 records in RAM. INFO 2026-06-08 08:51:27 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr12:9,101,144 INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 914281 as yet unmatched pairs. 74227 records in RAM. INFO 2026-06-08 08:51:28 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr12:12,908,977 INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 911780 as yet unmatched pairs. 71725 records in RAM. INFO 2026-06-08 08:51:29 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr12:26,995,243 INFO 2026-06-08 08:51:29 MarkDuplicates Tracking 908751 as yet unmatched pairs. 68693 records in RAM. INFO 2026-06-08 08:51:31 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr12:47,795,669 INFO 2026-06-08 08:51:31 MarkDuplicates Tracking 906074 as yet unmatched pairs. 66012 records in RAM. INFO 2026-06-08 08:51:32 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr12:49,051,613 INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 902985 as yet unmatched pairs. 62919 records in RAM. INFO 2026-06-08 08:51:34 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr12:50,130,575 INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 900539 as yet unmatched pairs. 60473 records in RAM. INFO 2026-06-08 08:51:35 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr12:52,449,478 INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 897318 as yet unmatched pairs. 57242 records in RAM. INFO 2026-06-08 08:51:36 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr12:52,904,933 INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 893822 as yet unmatched pairs. 53744 records in RAM. INFO 2026-06-08 08:51:38 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr12:53,040,200 INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 890998 as yet unmatched pairs. 50910 records in RAM. INFO 2026-06-08 08:51:40 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr12:53,713,137 INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 888649 as yet unmatched pairs. 48561 records in RAM. INFO 2026-06-08 08:51:42 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr12:56,004,481 INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 885951 as yet unmatched pairs. 45863 records in RAM. INFO 2026-06-08 08:51:43 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr12:56,184,906 INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 883148 as yet unmatched pairs. 43060 records in RAM. INFO 2026-06-08 08:51:45 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr12:56,714,367 INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 880654 as yet unmatched pairs. 40566 records in RAM. INFO 2026-06-08 08:51:46 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr12:57,104,566 INFO 2026-06-08 08:51:46 MarkDuplicates Tracking 878145 as yet unmatched pairs. 38056 records in RAM. INFO 2026-06-08 08:51:47 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr12:57,193,956 INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 874830 as yet unmatched pairs. 34739 records in RAM. INFO 2026-06-08 08:51:49 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr12:57,694,857 INFO 2026-06-08 08:51:49 MarkDuplicates Tracking 871164 as yet unmatched pairs. 31073 records in RAM. INFO 2026-06-08 08:51:50 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr12:68,808,361 INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 868380 as yet unmatched pairs. 28283 records in RAM. INFO 2026-06-08 08:51:52 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr12:92,929,055 INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 865717 as yet unmatched pairs. 25614 records in RAM. INFO 2026-06-08 08:51:53 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr12:104,265,374 INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 862990 as yet unmatched pairs. 22884 records in RAM. INFO 2026-06-08 08:51:55 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr12:110,342,363 INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 860154 as yet unmatched pairs. 20045 records in RAM. INFO 2026-06-08 08:51:57 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 2s. Last read position: chr12:112,917,612 INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 856841 as yet unmatched pairs. 16726 records in RAM. INFO 2026-06-08 08:51:59 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr12:119,825,170 INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 853964 as yet unmatched pairs. 13846 records in RAM. INFO 2026-06-08 08:52:00 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr12:121,810,209 INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 850867 as yet unmatched pairs. 10747 records in RAM. INFO 2026-06-08 08:52:02 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr12:123,265,209 INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 847779 as yet unmatched pairs. 7654 records in RAM. INFO 2026-06-08 08:52:03 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr12:124,968,884 INFO 2026-06-08 08:52:03 MarkDuplicates Tracking 844774 as yet unmatched pairs. 4642 records in RAM. INFO 2026-06-08 08:52:04 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr12:132,761,650 INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 840938 as yet unmatched pairs. 801 records in RAM. INFO 2026-06-08 08:52:06 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr13:24,426,575 INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 838292 as yet unmatched pairs. 28930 records in RAM. INFO 2026-06-08 08:52:08 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr13:29,049,647 INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 834771 as yet unmatched pairs. 25407 records in RAM. INFO 2026-06-08 08:52:09 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr13:40,941,174 INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 832156 as yet unmatched pairs. 22788 records in RAM. INFO 2026-06-08 08:52:11 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr13:47,943,350 INFO 2026-06-08 08:52:11 MarkDuplicates Tracking 829012 as yet unmatched pairs. 19641 records in RAM. INFO 2026-06-08 08:52:12 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr13:75,362,591 INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 825982 as yet unmatched pairs. 16604 records in RAM. INFO 2026-06-08 08:52:14 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr13:99,295,458 INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 823027 as yet unmatched pairs. 13638 records in RAM. INFO 2026-06-08 08:52:16 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr13:110,176,495 INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 819580 as yet unmatched pairs. 10183 records in RAM. INFO 2026-06-08 08:52:17 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr13:110,430,417 INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 817214 as yet unmatched pairs. 7816 records in RAM. INFO 2026-06-08 08:52:18 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr13:110,879,908 INFO 2026-06-08 08:52:18 MarkDuplicates Tracking 812881 as yet unmatched pairs. 3482 records in RAM. INFO 2026-06-08 08:52:20 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr14:20,378,037 INFO 2026-06-08 08:52:20 MarkDuplicates Tracking 809269 as yet unmatched pairs. 39808 records in RAM. INFO 2026-06-08 08:52:22 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr14:22,873,380 INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 806493 as yet unmatched pairs. 37028 records in RAM. INFO 2026-06-08 08:52:23 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr14:24,164,893 INFO 2026-06-08 08:52:23 MarkDuplicates Tracking 802940 as yet unmatched pairs. 33473 records in RAM. INFO 2026-06-08 08:52:24 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr14:36,577,957 INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 800033 as yet unmatched pairs. 30561 records in RAM. INFO 2026-06-08 08:52:27 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 2s. Last read position: chr14:55,138,148 INFO 2026-06-08 08:52:27 MarkDuplicates Tracking 798059 as yet unmatched pairs. 28584 records in RAM. INFO 2026-06-08 08:52:28 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr14:64,487,537 INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 794679 as yet unmatched pairs. 25203 records in RAM. INFO 2026-06-08 08:52:30 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr14:69,122,277 INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 791694 as yet unmatched pairs. 22217 records in RAM. INFO 2026-06-08 08:52:31 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr14:74,503,960 INFO 2026-06-08 08:52:31 MarkDuplicates Tracking 789032 as yet unmatched pairs. 19554 records in RAM. INFO 2026-06-08 08:52:33 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr14:76,806,523 INFO 2026-06-08 08:52:33 MarkDuplicates Tracking 785746 as yet unmatched pairs. 16268 records in RAM. INFO 2026-06-08 08:52:34 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr14:92,797,702 INFO 2026-06-08 08:52:34 MarkDuplicates Tracking 782684 as yet unmatched pairs. 13187 records in RAM. INFO 2026-06-08 08:52:35 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr14:94,614,929 INFO 2026-06-08 08:52:35 MarkDuplicates Tracking 779785 as yet unmatched pairs. 10285 records in RAM. INFO 2026-06-08 08:52:37 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr14:102,050,117 INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 776738 as yet unmatched pairs. 7193 records in RAM. INFO 2026-06-08 08:52:38 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr14:104,710,990 INFO 2026-06-08 08:52:38 MarkDuplicates Tracking 773175 as yet unmatched pairs. 3628 records in RAM. INFO 2026-06-08 08:52:40 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr14:105,854,524 INFO 2026-06-08 08:52:40 MarkDuplicates Tracking 769815 as yet unmatched pairs. 263 records in RAM. INFO 2026-06-08 08:52:41 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr15:30,605,724 INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 767337 as yet unmatched pairs. 39783 records in RAM. INFO 2026-06-08 08:52:43 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr15:39,582,576 INFO 2026-06-08 08:52:43 MarkDuplicates Tracking 765323 as yet unmatched pairs. 37767 records in RAM. INFO 2026-06-08 08:52:44 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr15:40,844,696 INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 761630 as yet unmatched pairs. 34073 records in RAM. INFO 2026-06-08 08:52:47 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 2s. Last read position: chr15:43,525,171 INFO 2026-06-08 08:52:47 MarkDuplicates Tracking 758400 as yet unmatched pairs. 30840 records in RAM. INFO 2026-06-08 08:52:48 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr15:45,431,001 INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 755631 as yet unmatched pairs. 28069 records in RAM. INFO 2026-06-08 08:52:50 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr15:57,253,243 INFO 2026-06-08 08:52:50 MarkDuplicates Tracking 752739 as yet unmatched pairs. 25174 records in RAM. INFO 2026-06-08 08:52:51 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr15:63,694,420 INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 749651 as yet unmatched pairs. 22074 records in RAM. INFO 2026-06-08 08:52:53 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr15:68,291,088 INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 746452 as yet unmatched pairs. 18872 records in RAM. INFO 2026-06-08 08:52:54 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr15:73,597,070 INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 743541 as yet unmatched pairs. 15960 records in RAM. INFO 2026-06-08 08:52:55 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr15:74,937,927 INFO 2026-06-08 08:52:55 MarkDuplicates Tracking 740122 as yet unmatched pairs. 12536 records in RAM. INFO 2026-06-08 08:52:57 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr15:79,237,124 INFO 2026-06-08 08:52:57 MarkDuplicates Tracking 736827 as yet unmatched pairs. 9236 records in RAM. INFO 2026-06-08 08:52:58 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr15:84,862,699 INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 734649 as yet unmatched pairs. 7054 records in RAM. INFO 2026-06-08 08:52:59 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr15:90,388,291 INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 731744 as yet unmatched pairs. 4146 records in RAM. INFO 2026-06-08 08:53:01 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr15:101,058,015 INFO 2026-06-08 08:53:01 MarkDuplicates Tracking 728331 as yet unmatched pairs. 716 records in RAM. INFO 2026-06-08 08:53:03 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 2s. Last read position: chr16:411,360 INFO 2026-06-08 08:53:03 MarkDuplicates Tracking 725128 as yet unmatched pairs. 108768 records in RAM. INFO 2026-06-08 08:53:06 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 2s. Last read position: chr16:791,266 INFO 2026-06-08 08:53:06 MarkDuplicates Tracking 721270 as yet unmatched pairs. 104909 records in RAM. INFO 2026-06-08 08:53:07 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr16:1,770,584 INFO 2026-06-08 08:53:07 MarkDuplicates Tracking 717578 as yet unmatched pairs. 101215 records in RAM. INFO 2026-06-08 08:53:09 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr16:2,056,204 INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 712952 as yet unmatched pairs. 96588 records in RAM. INFO 2026-06-08 08:53:10 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr16:2,253,987 INFO 2026-06-08 08:53:10 MarkDuplicates Tracking 709924 as yet unmatched pairs. 93559 records in RAM. INFO 2026-06-08 08:53:12 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr16:2,766,589 INFO 2026-06-08 08:53:12 MarkDuplicates Tracking 706606 as yet unmatched pairs. 90241 records in RAM. INFO 2026-06-08 08:53:13 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr16:3,115,474 INFO 2026-06-08 08:53:13 MarkDuplicates Tracking 702999 as yet unmatched pairs. 86634 records in RAM. INFO 2026-06-08 08:53:14 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr16:4,441,554 INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 699637 as yet unmatched pairs. 83270 records in RAM. INFO 2026-06-08 08:53:16 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr16:8,899,140 INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 696344 as yet unmatched pairs. 79976 records in RAM. INFO 2026-06-08 08:53:17 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr16:14,247,165 INFO 2026-06-08 08:53:17 MarkDuplicates Tracking 693643 as yet unmatched pairs. 77272 records in RAM. INFO 2026-06-08 08:53:18 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr16:15,001,772 INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 692134 as yet unmatched pairs. 75763 records in RAM. INFO 2026-06-08 08:53:20 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr16:16,278,663 INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 689639 as yet unmatched pairs. 73268 records in RAM. INFO 2026-06-08 08:53:21 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr16:17,134,565 INFO 2026-06-08 08:53:21 MarkDuplicates Tracking 689019 as yet unmatched pairs. 72648 records in RAM. INFO 2026-06-08 08:53:22 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr16:18,417,904 INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 687547 as yet unmatched pairs. 71176 records in RAM. INFO 2026-06-08 08:53:24 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr16:19,872,753 INFO 2026-06-08 08:53:24 MarkDuplicates Tracking 685229 as yet unmatched pairs. 68857 records in RAM. INFO 2026-06-08 08:53:25 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr16:21,419,453 INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 684262 as yet unmatched pairs. 67889 records in RAM. INFO 2026-06-08 08:53:27 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr16:21,857,250 INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 683068 as yet unmatched pairs. 66693 records in RAM. INFO 2026-06-08 08:53:28 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,406 INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 682127 as yet unmatched pairs. 65752 records in RAM. INFO 2026-06-08 08:53:30 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr16:25,227,081 INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 680011 as yet unmatched pairs. 63633 records in RAM. INFO 2026-06-08 08:53:31 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr16:28,486,347 INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 677727 as yet unmatched pairs. 61347 records in RAM. INFO 2026-06-08 08:53:32 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr16:28,830,965 INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 676046 as yet unmatched pairs. 59665 records in RAM. INFO 2026-06-08 08:53:34 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr16:29,384,026 INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 673403 as yet unmatched pairs. 57022 records in RAM. INFO 2026-06-08 08:53:35 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr16:29,533,119 INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 672254 as yet unmatched pairs. 55873 records in RAM. INFO 2026-06-08 08:53:36 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr16:29,971,494 INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 668626 as yet unmatched pairs. 52245 records in RAM. INFO 2026-06-08 08:53:38 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr16:30,193,559 INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 665391 as yet unmatched pairs. 49008 records in RAM. INFO 2026-06-08 08:53:39 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr16:30,444,442 INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 664210 as yet unmatched pairs. 47827 records in RAM. INFO 2026-06-08 08:53:40 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr16:30,756,250 INFO 2026-06-08 08:53:40 MarkDuplicates Tracking 660674 as yet unmatched pairs. 44284 records in RAM. INFO 2026-06-08 08:53:42 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr16:31,183,874 INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 658263 as yet unmatched pairs. 41873 records in RAM. INFO 2026-06-08 08:53:43 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr16:46,682,089 INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 654391 as yet unmatched pairs. 37999 records in RAM. INFO 2026-06-08 08:53:45 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr16:52,464,029 INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 652062 as yet unmatched pairs. 35654 records in RAM. INFO 2026-06-08 08:53:47 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr16:57,651,429 INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 648307 as yet unmatched pairs. 31895 records in RAM. INFO 2026-06-08 08:53:50 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 2s. Last read position: chr16:67,234,194 INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 644933 as yet unmatched pairs. 28520 records in RAM. INFO 2026-06-08 08:53:51 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr16:68,829,679 INFO 2026-06-08 08:53:51 MarkDuplicates Tracking 641924 as yet unmatched pairs. 25510 records in RAM. INFO 2026-06-08 08:53:52 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr16:70,564,025 INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 638719 as yet unmatched pairs. 22298 records in RAM. INFO 2026-06-08 08:53:54 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr16:72,059,134 INFO 2026-06-08 08:53:54 MarkDuplicates Tracking 637288 as yet unmatched pairs. 20864 records in RAM. INFO 2026-06-08 08:53:55 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr16:72,959,452 INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 634194 as yet unmatched pairs. 17767 records in RAM. INFO 2026-06-08 08:53:56 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr16:84,180,171 INFO 2026-06-08 08:53:56 MarkDuplicates Tracking 631007 as yet unmatched pairs. 14570 records in RAM. INFO 2026-06-08 08:53:58 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr16:85,920,094 INFO 2026-06-08 08:53:58 MarkDuplicates Tracking 627633 as yet unmatched pairs. 11192 records in RAM. INFO 2026-06-08 08:53:59 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr16:88,720,436 INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 624134 as yet unmatched pairs. 7680 records in RAM. INFO 2026-06-08 08:54:01 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr16:89,561,010 INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 621300 as yet unmatched pairs. 4844 records in RAM. INFO 2026-06-08 08:54:02 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr16:89,961,746 INFO 2026-06-08 08:54:02 MarkDuplicates Tracking 616558 as yet unmatched pairs. 97 records in RAM. INFO 2026-06-08 08:54:05 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 2s. Last read position: chr17:1,650,795 INFO 2026-06-08 08:54:05 MarkDuplicates Tracking 613481 as yet unmatched pairs. 178971 records in RAM. INFO 2026-06-08 08:54:07 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr17:3,020,517 INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 610014 as yet unmatched pairs. 175501 records in RAM. INFO 2026-06-08 08:54:08 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr17:4,892,183 INFO 2026-06-08 08:54:08 MarkDuplicates Tracking 606906 as yet unmatched pairs. 172393 records in RAM. INFO 2026-06-08 08:54:10 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr17:7,223,222 INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 603406 as yet unmatched pairs. 168893 records in RAM. INFO 2026-06-08 08:54:11 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr17:7,559,277 INFO 2026-06-08 08:54:11 MarkDuplicates Tracking 600173 as yet unmatched pairs. 165659 records in RAM. INFO 2026-06-08 08:54:13 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr17:8,232,018 INFO 2026-06-08 08:54:13 MarkDuplicates Tracking 597301 as yet unmatched pairs. 162782 records in RAM. INFO 2026-06-08 08:54:14 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr17:16,382,446 INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 594730 as yet unmatched pairs. 160210 records in RAM. INFO 2026-06-08 08:54:16 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr17:18,254,545 INFO 2026-06-08 08:54:16 MarkDuplicates Tracking 591277 as yet unmatched pairs. 156755 records in RAM. INFO 2026-06-08 08:54:18 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr17:21,504,686 INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 588487 as yet unmatched pairs. 153964 records in RAM. INFO 2026-06-08 08:54:19 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr17:28,634,837 INFO 2026-06-08 08:54:19 MarkDuplicates Tracking 585893 as yet unmatched pairs. 151370 records in RAM. INFO 2026-06-08 08:54:21 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr17:29,576,900 INFO 2026-06-08 08:54:21 MarkDuplicates Tracking 582945 as yet unmatched pairs. 148421 records in RAM. INFO 2026-06-08 08:54:23 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr17:32,780,769 INFO 2026-06-08 08:54:23 MarkDuplicates Tracking 580455 as yet unmatched pairs. 145923 records in RAM. INFO 2026-06-08 08:54:24 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr17:36,435,310 INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 576817 as yet unmatched pairs. 142285 records in RAM. INFO 2026-06-08 08:54:26 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr17:38,720,417 INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 574611 as yet unmatched pairs. 140079 records in RAM. INFO 2026-06-08 08:54:27 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr17:39,627,393 INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 572606 as yet unmatched pairs. 138071 records in RAM. INFO 2026-06-08 08:54:29 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr17:39,725,087 INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 568658 as yet unmatched pairs. 134122 records in RAM. INFO 2026-06-08 08:54:30 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr17:40,389,567 INFO 2026-06-08 08:54:30 MarkDuplicates Tracking 565318 as yet unmatched pairs. 130779 records in RAM. INFO 2026-06-08 08:54:31 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr17:41,912,437 INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 561798 as yet unmatched pairs. 127256 records in RAM. INFO 2026-06-08 08:54:33 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr17:42,798,153 INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 558598 as yet unmatched pairs. 124056 records in RAM. INFO 2026-06-08 08:54:34 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr17:44,197,619 INFO 2026-06-08 08:54:34 MarkDuplicates Tracking 555412 as yet unmatched pairs. 120870 records in RAM. INFO 2026-06-08 08:54:36 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr17:45,404,055 INFO 2026-06-08 08:54:36 MarkDuplicates Tracking 552225 as yet unmatched pairs. 117683 records in RAM. INFO 2026-06-08 08:54:37 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr17:47,680,507 INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 549779 as yet unmatched pairs. 115237 records in RAM. INFO 2026-06-08 08:54:39 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr17:48,895,210 INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 546723 as yet unmatched pairs. 112180 records in RAM. INFO 2026-06-08 08:54:40 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,418 INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 544595 as yet unmatched pairs. 110051 records in RAM. INFO 2026-06-08 08:54:42 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,485 INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 550788 as yet unmatched pairs. 116244 records in RAM. INFO 2026-06-08 08:54:43 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,111 INFO 2026-06-08 08:54:43 MarkDuplicates Tracking 551963 as yet unmatched pairs. 117419 records in RAM. INFO 2026-06-08 08:54:45 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,784 INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 544889 as yet unmatched pairs. 110345 records in RAM. INFO 2026-06-08 08:54:47 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,434 INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 540035 as yet unmatched pairs. 105491 records in RAM. INFO 2026-06-08 08:54:49 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,864 INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 540270 as yet unmatched pairs. 105726 records in RAM. INFO 2026-06-08 08:54:51 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,332 INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 548450 as yet unmatched pairs. 113905 records in RAM. INFO 2026-06-08 08:54:52 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,429 INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 531349 as yet unmatched pairs. 96804 records in RAM. INFO 2026-06-08 08:54:54 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,651 INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 523324 as yet unmatched pairs. 88779 records in RAM. INFO 2026-06-08 08:54:56 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,026 INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 526918 as yet unmatched pairs. 92373 records in RAM. INFO 2026-06-08 08:54:57 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,142 INFO 2026-06-08 08:54:57 MarkDuplicates Tracking 534638 as yet unmatched pairs. 100093 records in RAM. INFO 2026-06-08 08:55:00 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,720 INFO 2026-06-08 08:55:00 MarkDuplicates Tracking 511810 as yet unmatched pairs. 77265 records in RAM. INFO 2026-06-08 08:55:01 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,453 INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 506875 as yet unmatched pairs. 72330 records in RAM. INFO 2026-06-08 08:55:03 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,960 INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 514258 as yet unmatched pairs. 79713 records in RAM. INFO 2026-06-08 08:55:04 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,483 INFO 2026-06-08 08:55:04 MarkDuplicates Tracking 501095 as yet unmatched pairs. 66550 records in RAM. INFO 2026-06-08 08:55:06 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,215 INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 508341 as yet unmatched pairs. 73796 records in RAM. INFO 2026-06-08 08:55:08 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,226 INFO 2026-06-08 08:55:08 MarkDuplicates Tracking 492096 as yet unmatched pairs. 57551 records in RAM. INFO 2026-06-08 08:55:09 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,824 INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 486816 as yet unmatched pairs. 52271 records in RAM. INFO 2026-06-08 08:55:11 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr17:51,153,623 INFO 2026-06-08 08:55:11 MarkDuplicates Tracking 481354 as yet unmatched pairs. 46809 records in RAM. INFO 2026-06-08 08:55:12 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr17:58,357,787 INFO 2026-06-08 08:55:12 MarkDuplicates Tracking 478696 as yet unmatched pairs. 44150 records in RAM. INFO 2026-06-08 08:55:14 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr17:59,685,745 INFO 2026-06-08 08:55:14 MarkDuplicates Tracking 475650 as yet unmatched pairs. 41104 records in RAM. INFO 2026-06-08 08:55:16 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr17:63,831,554 INFO 2026-06-08 08:55:16 MarkDuplicates Tracking 472305 as yet unmatched pairs. 37758 records in RAM. INFO 2026-06-08 08:55:18 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr17:67,854,434 INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 469440 as yet unmatched pairs. 34893 records in RAM. INFO 2026-06-08 08:55:19 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr17:73,724,658 INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 466208 as yet unmatched pairs. 31659 records in RAM. INFO 2026-06-08 08:55:21 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr17:75,563,329 INFO 2026-06-08 08:55:21 MarkDuplicates Tracking 463288 as yet unmatched pairs. 28722 records in RAM. INFO 2026-06-08 08:55:22 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr17:75,729,270 INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 460025 as yet unmatched pairs. 25459 records in RAM. INFO 2026-06-08 08:55:24 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr17:76,292,664 INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 456359 as yet unmatched pairs. 21793 records in RAM. INFO 2026-06-08 08:55:25 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr17:78,803,465 INFO 2026-06-08 08:55:25 MarkDuplicates Tracking 452931 as yet unmatched pairs. 18364 records in RAM. INFO 2026-06-08 08:55:27 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr17:80,221,565 INFO 2026-06-08 08:55:27 MarkDuplicates Tracking 449565 as yet unmatched pairs. 14998 records in RAM. INFO 2026-06-08 08:55:28 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr17:81,452,794 INFO 2026-06-08 08:55:28 MarkDuplicates Tracking 446077 as yet unmatched pairs. 11507 records in RAM. INFO 2026-06-08 08:55:30 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr17:81,845,964 INFO 2026-06-08 08:55:30 MarkDuplicates Tracking 443046 as yet unmatched pairs. 8475 records in RAM. INFO 2026-06-08 08:55:31 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr17:82,064,929 INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 439095 as yet unmatched pairs. 4523 records in RAM. INFO 2026-06-08 08:57:34 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 122s. Last read position: chr17:82,735,691 INFO 2026-06-08 08:57:34 MarkDuplicates Tracking 435271 as yet unmatched pairs. 699 records in RAM. INFO 2026-06-08 08:57:36 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 1s. Last read position: chr18:12,329,159 INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 432293 as yet unmatched pairs. 8191 records in RAM. INFO 2026-06-08 08:57:37 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:17:06s. Time for last 1,000,000: 1s. Last read position: chr18:33,095,992 INFO 2026-06-08 08:57:37 MarkDuplicates Tracking 429526 as yet unmatched pairs. 5418 records in RAM. INFO 2026-06-08 08:57:38 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:17:08s. Time for last 1,000,000: 1s. Last read position: chr18:58,919,283 INFO 2026-06-08 08:57:38 MarkDuplicates Tracking 426737 as yet unmatched pairs. 2619 records in RAM. INFO 2026-06-08 08:57:41 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 3s. Last read position: chr19:579,522 INFO 2026-06-08 08:57:41 MarkDuplicates Tracking 423704 as yet unmatched pairs. 174656 records in RAM. INFO 2026-06-08 08:57:43 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:17:13s. Time for last 1,000,000: 1s. Last read position: chr19:932,468 INFO 2026-06-08 08:57:43 MarkDuplicates Tracking 419886 as yet unmatched pairs. 170838 records in RAM. INFO 2026-06-08 08:57:45 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chr19:1,271,436 INFO 2026-06-08 08:57:45 MarkDuplicates Tracking 416161 as yet unmatched pairs. 167113 records in RAM. INFO 2026-06-08 08:57:46 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 1s. Last read position: chr19:1,821,609 INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 412090 as yet unmatched pairs. 163041 records in RAM. INFO 2026-06-08 08:57:48 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 1s. Last read position: chr19:2,340,948 INFO 2026-06-08 08:57:48 MarkDuplicates Tracking 408407 as yet unmatched pairs. 159356 records in RAM. INFO 2026-06-08 08:57:49 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 1s. Last read position: chr19:3,743,938 INFO 2026-06-08 08:57:49 MarkDuplicates Tracking 404610 as yet unmatched pairs. 155559 records in RAM. INFO 2026-06-08 08:57:51 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 1s. Last read position: chr19:4,670,163 INFO 2026-06-08 08:57:51 MarkDuplicates Tracking 400873 as yet unmatched pairs. 151822 records in RAM. INFO 2026-06-08 08:57:52 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr19:5,788,100 INFO 2026-06-08 08:57:52 MarkDuplicates Tracking 397443 as yet unmatched pairs. 148391 records in RAM. INFO 2026-06-08 08:57:54 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:17:23s. Time for last 1,000,000: 1s. Last read position: chr19:6,682,208 INFO 2026-06-08 08:57:54 MarkDuplicates Tracking 394314 as yet unmatched pairs. 145262 records in RAM. INFO 2026-06-08 08:57:56 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 1s. Last read position: chr19:7,117,139 INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 391311 as yet unmatched pairs. 142257 records in RAM. INFO 2026-06-08 08:57:57 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 1s. Last read position: chr19:8,322,071 INFO 2026-06-08 08:57:57 MarkDuplicates Tracking 387754 as yet unmatched pairs. 138699 records in RAM. INFO 2026-06-08 08:57:59 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 2s. Last read position: chr19:10,294,533 INFO 2026-06-08 08:57:59 MarkDuplicates Tracking 384356 as yet unmatched pairs. 135300 records in RAM. INFO 2026-06-08 08:58:01 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:17:30s. Time for last 1,000,000: 1s. Last read position: chr19:10,830,211 INFO 2026-06-08 08:58:01 MarkDuplicates Tracking 381188 as yet unmatched pairs. 132132 records in RAM. INFO 2026-06-08 08:58:03 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 1s. Last read position: chr19:11,442,450 INFO 2026-06-08 08:58:03 MarkDuplicates Tracking 377662 as yet unmatched pairs. 128602 records in RAM. INFO 2026-06-08 08:58:04 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr19:12,791,901 INFO 2026-06-08 08:58:04 MarkDuplicates Tracking 374438 as yet unmatched pairs. 125378 records in RAM. INFO 2026-06-08 08:58:05 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr19:13,762,335 INFO 2026-06-08 08:58:05 MarkDuplicates Tracking 370794 as yet unmatched pairs. 121734 records in RAM. INFO 2026-06-08 08:58:07 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr19:14,516,661 INFO 2026-06-08 08:58:07 MarkDuplicates Tracking 368199 as yet unmatched pairs. 119136 records in RAM. INFO 2026-06-08 08:58:08 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr19:15,239,154 INFO 2026-06-08 08:58:08 MarkDuplicates Tracking 364034 as yet unmatched pairs. 114971 records in RAM. INFO 2026-06-08 08:58:10 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr19:15,372,941 INFO 2026-06-08 08:58:10 MarkDuplicates Tracking 360854 as yet unmatched pairs. 111790 records in RAM. INFO 2026-06-08 08:58:12 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr19:16,878,585 INFO 2026-06-08 08:58:12 MarkDuplicates Tracking 357217 as yet unmatched pairs. 108150 records in RAM. INFO 2026-06-08 08:58:14 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chr19:17,808,070 INFO 2026-06-08 08:58:14 MarkDuplicates Tracking 353634 as yet unmatched pairs. 104555 records in RAM. INFO 2026-06-08 08:58:15 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr19:18,427,399 INFO 2026-06-08 08:58:15 MarkDuplicates Tracking 350082 as yet unmatched pairs. 101002 records in RAM. INFO 2026-06-08 08:58:17 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr19:18,899,878 INFO 2026-06-08 08:58:17 MarkDuplicates Tracking 346569 as yet unmatched pairs. 97489 records in RAM. INFO 2026-06-08 08:58:18 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr19:29,613,962 INFO 2026-06-08 08:58:18 MarkDuplicates Tracking 343179 as yet unmatched pairs. 94097 records in RAM. INFO 2026-06-08 08:58:20 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chr19:35,009,169 INFO 2026-06-08 08:58:20 MarkDuplicates Tracking 340153 as yet unmatched pairs. 91069 records in RAM. INFO 2026-06-08 08:58:21 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr19:35,270,780 INFO 2026-06-08 08:58:21 MarkDuplicates Tracking 336050 as yet unmatched pairs. 86966 records in RAM. INFO 2026-06-08 08:58:23 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr19:37,484,896 INFO 2026-06-08 08:58:23 MarkDuplicates Tracking 332890 as yet unmatched pairs. 83806 records in RAM. INFO 2026-06-08 08:58:25 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr19:38,717,950 INFO 2026-06-08 08:58:25 MarkDuplicates Tracking 330421 as yet unmatched pairs. 81337 records in RAM. INFO 2026-06-08 08:58:26 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 1s. Last read position: chr19:39,175,012 INFO 2026-06-08 08:58:26 MarkDuplicates Tracking 326504 as yet unmatched pairs. 77418 records in RAM. INFO 2026-06-08 08:58:28 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr19:39,870,236 INFO 2026-06-08 08:58:28 MarkDuplicates Tracking 323320 as yet unmatched pairs. 74232 records in RAM. INFO 2026-06-08 08:58:29 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr19:39,943,403 INFO 2026-06-08 08:58:29 MarkDuplicates Tracking 320914 as yet unmatched pairs. 71826 records in RAM. INFO 2026-06-08 08:58:30 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr19:40,677,323 INFO 2026-06-08 08:58:30 MarkDuplicates Tracking 317123 as yet unmatched pairs. 68035 records in RAM. INFO 2026-06-08 08:58:32 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr19:41,341,900 INFO 2026-06-08 08:58:32 MarkDuplicates Tracking 314045 as yet unmatched pairs. 64957 records in RAM. INFO 2026-06-08 08:58:34 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr19:41,709,769 INFO 2026-06-08 08:58:34 MarkDuplicates Tracking 312385 as yet unmatched pairs. 63297 records in RAM. INFO 2026-06-08 08:58:35 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr19:41,717,504 INFO 2026-06-08 08:58:35 MarkDuplicates Tracking 316173 as yet unmatched pairs. 67084 records in RAM. INFO 2026-06-08 08:58:37 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:18:06s. Time for last 1,000,000: 1s. Last read position: chr19:41,720,050 INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 311030 as yet unmatched pairs. 61941 records in RAM. INFO 2026-06-08 08:58:39 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 2s. Last read position: chr19:41,905,757 INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 303090 as yet unmatched pairs. 54001 records in RAM. INFO 2026-06-08 08:58:41 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 2s. Last read position: chr19:42,294,900 INFO 2026-06-08 08:58:41 MarkDuplicates Tracking 299867 as yet unmatched pairs. 50777 records in RAM. INFO 2026-06-08 08:58:43 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 1s. Last read position: chr19:44,901,029 INFO 2026-06-08 08:58:43 MarkDuplicates Tracking 296383 as yet unmatched pairs. 47248 records in RAM. INFO 2026-06-08 08:58:44 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr19:45,163,213 INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 292421 as yet unmatched pairs. 43285 records in RAM. INFO 2026-06-08 08:58:45 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr19:46,003,066 INFO 2026-06-08 08:58:45 MarkDuplicates Tracking 288692 as yet unmatched pairs. 39551 records in RAM. INFO 2026-06-08 08:58:47 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr19:47,680,865 INFO 2026-06-08 08:58:47 MarkDuplicates Tracking 284980 as yet unmatched pairs. 35838 records in RAM. INFO 2026-06-08 08:58:48 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr19:48,615,917 INFO 2026-06-08 08:58:48 MarkDuplicates Tracking 282163 as yet unmatched pairs. 33020 records in RAM. INFO 2026-06-08 08:58:49 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr19:49,108,170 INFO 2026-06-08 08:58:49 MarkDuplicates Tracking 278383 as yet unmatched pairs. 29240 records in RAM. INFO 2026-06-08 08:58:51 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr19:49,497,944 INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 275389 as yet unmatched pairs. 26246 records in RAM. INFO 2026-06-08 08:58:53 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr19:49,799,657 INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 271319 as yet unmatched pairs. 22173 records in RAM. INFO 2026-06-08 08:58:54 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr19:50,271,481 INFO 2026-06-08 08:58:54 MarkDuplicates Tracking 267473 as yet unmatched pairs. 18321 records in RAM. INFO 2026-06-08 08:58:55 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr19:52,211,479 INFO 2026-06-08 08:58:55 MarkDuplicates Tracking 263563 as yet unmatched pairs. 14411 records in RAM. INFO 2026-06-08 08:58:57 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr19:54,207,519 INFO 2026-06-08 08:58:57 MarkDuplicates Tracking 260157 as yet unmatched pairs. 11002 records in RAM. INFO 2026-06-08 08:58:58 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr19:55,386,626 INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 258216 as yet unmatched pairs. 9061 records in RAM. INFO 2026-06-08 08:59:00 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr19:57,355,258 INFO 2026-06-08 08:59:00 MarkDuplicates Tracking 252929 as yet unmatched pairs. 3773 records in RAM. INFO 2026-06-08 08:59:02 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 2s. Last read position: chr19:58,547,830 INFO 2026-06-08 08:59:02 MarkDuplicates Tracking 250007 as yet unmatched pairs. 849 records in RAM. INFO 2026-06-08 08:59:04 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 2s. Last read position: chr20:3,218,620 INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 246520 as yet unmatched pairs. 48679 records in RAM. INFO 2026-06-08 08:59:05 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr20:17,618,625 INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 243538 as yet unmatched pairs. 45693 records in RAM. INFO 2026-06-08 08:59:07 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr20:21,246,478 INFO 2026-06-08 08:59:07 MarkDuplicates Tracking 240384 as yet unmatched pairs. 42539 records in RAM. INFO 2026-06-08 08:59:09 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr20:25,278,341 INFO 2026-06-08 08:59:09 MarkDuplicates Tracking 238677 as yet unmatched pairs. 40832 records in RAM. INFO 2026-06-08 08:59:10 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr20:32,141,520 INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 233882 as yet unmatched pairs. 36036 records in RAM. INFO 2026-06-08 08:59:12 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr20:34,295,503 INFO 2026-06-08 08:59:12 MarkDuplicates Tracking 230828 as yet unmatched pairs. 32978 records in RAM. INFO 2026-06-08 08:59:13 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr20:35,626,284 INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 227723 as yet unmatched pairs. 29872 records in RAM. INFO 2026-06-08 08:59:15 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr20:37,198,402 INFO 2026-06-08 08:59:15 MarkDuplicates Tracking 224526 as yet unmatched pairs. 26673 records in RAM. INFO 2026-06-08 08:59:16 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr20:43,460,541 INFO 2026-06-08 08:59:16 MarkDuplicates Tracking 221567 as yet unmatched pairs. 23711 records in RAM. INFO 2026-06-08 08:59:18 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr20:45,424,245 INFO 2026-06-08 08:59:18 MarkDuplicates Tracking 218308 as yet unmatched pairs. 20450 records in RAM. INFO 2026-06-08 08:59:19 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr20:47,262,343 INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 215365 as yet unmatched pairs. 17507 records in RAM. INFO 2026-06-08 08:59:21 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr20:50,876,538 INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 212088 as yet unmatched pairs. 14230 records in RAM. INFO 2026-06-08 08:59:22 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr20:58,667,562 INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 209033 as yet unmatched pairs. 11163 records in RAM. INFO 2026-06-08 08:59:24 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr20:62,307,735 INFO 2026-06-08 08:59:24 MarkDuplicates Tracking 204942 as yet unmatched pairs. 7069 records in RAM. INFO 2026-06-08 08:59:25 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr20:63,495,906 INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 201447 as yet unmatched pairs. 3574 records in RAM. INFO 2026-06-08 08:59:27 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr21:5,033,792 INFO 2026-06-08 08:59:27 MarkDuplicates Tracking 197900 as yet unmatched pairs. 55913 records in RAM. INFO 2026-06-08 08:59:29 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr21:8,214,682 INFO 2026-06-08 08:59:29 MarkDuplicates Tracking 196498 as yet unmatched pairs. 54510 records in RAM. INFO 2026-06-08 08:59:31 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr21:8,216,078 INFO 2026-06-08 08:59:31 MarkDuplicates Tracking 187423 as yet unmatched pairs. 45384 records in RAM. INFO 2026-06-08 08:59:32 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr21:8,254,538 INFO 2026-06-08 08:59:32 MarkDuplicates Tracking 186238 as yet unmatched pairs. 44195 records in RAM. INFO 2026-06-08 08:59:33 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,926 INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 186073 as yet unmatched pairs. 44030 records in RAM. INFO 2026-06-08 08:59:34 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 0s. Last read position: chr21:8,258,964 INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 185982 as yet unmatched pairs. 43938 records in RAM. INFO 2026-06-08 08:59:35 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 0s. Last read position: chr21:8,397,730 INFO 2026-06-08 08:59:35 MarkDuplicates Tracking 185342 as yet unmatched pairs. 43295 records in RAM. INFO 2026-06-08 08:59:36 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,124 INFO 2026-06-08 08:59:36 MarkDuplicates Tracking 182144 as yet unmatched pairs. 40085 records in RAM. INFO 2026-06-08 08:59:37 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr21:8,441,670 INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 179873 as yet unmatched pairs. 37803 records in RAM. INFO 2026-06-08 08:59:38 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 0s. Last read position: chr21:8,441,962 INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 176623 as yet unmatched pairs. 34553 records in RAM. INFO 2026-06-08 08:59:39 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr21:8,442,277 INFO 2026-06-08 08:59:39 MarkDuplicates Tracking 175287 as yet unmatched pairs. 33217 records in RAM. INFO 2026-06-08 08:59:40 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 0s. Last read position: chr21:8,444,526 INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 173602 as yet unmatched pairs. 31530 records in RAM. INFO 2026-06-08 08:59:41 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr21:26,000,023 INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 172052 as yet unmatched pairs. 29980 records in RAM. INFO 2026-06-08 08:59:43 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr21:33,532,347 INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 168255 as yet unmatched pairs. 26183 records in RAM. INFO 2026-06-08 08:59:44 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr21:37,166,559 INFO 2026-06-08 08:59:44 MarkDuplicates Tracking 164952 as yet unmatched pairs. 22879 records in RAM. INFO 2026-06-08 08:59:46 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr21:39,312,875 INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 161875 as yet unmatched pairs. 19802 records in RAM. INFO 2026-06-08 08:59:48 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr21:41,494,379 INFO 2026-06-08 08:59:48 MarkDuplicates Tracking 158605 as yet unmatched pairs. 16532 records in RAM. INFO 2026-06-08 08:59:49 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr21:43,687,832 INFO 2026-06-08 08:59:49 MarkDuplicates Tracking 155125 as yet unmatched pairs. 13052 records in RAM. INFO 2026-06-08 08:59:50 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr21:44,318,538 INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 152552 as yet unmatched pairs. 10479 records in RAM. INFO 2026-06-08 08:59:52 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr21:45,489,496 INFO 2026-06-08 08:59:52 MarkDuplicates Tracking 148491 as yet unmatched pairs. 6417 records in RAM. INFO 2026-06-08 08:59:53 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr21:46,122,506 INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 144848 as yet unmatched pairs. 2774 records in RAM. INFO 2026-06-08 08:59:55 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 2s. Last read position: chr22:17,818,351 INFO 2026-06-08 08:59:55 MarkDuplicates Tracking 141361 as yet unmatched pairs. 42432 records in RAM. INFO 2026-06-08 08:59:57 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 1s. Last read position: chr22:20,796,191 INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 137999 as yet unmatched pairs. 39070 records in RAM. INFO 2026-06-08 08:59:58 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr22:23,772,866 INFO 2026-06-08 08:59:58 MarkDuplicates Tracking 134420 as yet unmatched pairs. 35490 records in RAM. INFO 2026-06-08 09:00:00 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 2s. Last read position: chr22:26,540,863 INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 130984 as yet unmatched pairs. 32054 records in RAM. INFO 2026-06-08 09:00:02 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr22:29,299,826 INFO 2026-06-08 09:00:02 MarkDuplicates Tracking 128344 as yet unmatched pairs. 29414 records in RAM. INFO 2026-06-08 09:00:03 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr22:31,621,034 INFO 2026-06-08 09:00:03 MarkDuplicates Tracking 125028 as yet unmatched pairs. 26098 records in RAM. INFO 2026-06-08 09:00:05 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr22:36,288,339 INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 121646 as yet unmatched pairs. 22715 records in RAM. INFO 2026-06-08 09:00:06 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr22:36,767,321 INFO 2026-06-08 09:00:06 MarkDuplicates Tracking 118178 as yet unmatched pairs. 19247 records in RAM. INFO 2026-06-08 09:00:08 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr22:38,089,588 INFO 2026-06-08 09:00:08 MarkDuplicates Tracking 114881 as yet unmatched pairs. 15950 records in RAM. INFO 2026-06-08 09:00:09 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr22:40,322,991 INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 111688 as yet unmatched pairs. 12757 records in RAM. INFO 2026-06-08 09:00:10 MarkDuplicates Read 641,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr22:41,939,103 INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 108730 as yet unmatched pairs. 9797 records in RAM. INFO 2026-06-08 09:00:12 MarkDuplicates Read 642,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr22:46,289,483 INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 105522 as yet unmatched pairs. 6588 records in RAM. INFO 2026-06-08 09:00:13 MarkDuplicates Read 643,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr22:50,436,422 INFO 2026-06-08 09:00:13 MarkDuplicates Tracking 101612 as yet unmatched pairs. 2677 records in RAM. INFO 2026-06-08 09:00:15 MarkDuplicates Read 644,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chrX:1,601,480 INFO 2026-06-08 09:00:15 MarkDuplicates Tracking 97842 as yet unmatched pairs. 45454 records in RAM. INFO 2026-06-08 09:00:16 MarkDuplicates Read 645,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chrX:13,709,070 INFO 2026-06-08 09:00:16 MarkDuplicates Tracking 94668 as yet unmatched pairs. 42279 records in RAM. INFO 2026-06-08 09:00:18 MarkDuplicates Read 646,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chrX:24,068,073 INFO 2026-06-08 09:00:18 MarkDuplicates Tracking 91677 as yet unmatched pairs. 39223 records in RAM. INFO 2026-06-08 09:00:20 MarkDuplicates Read 647,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 2s. Last read position: chrX:41,347,710 INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 89265 as yet unmatched pairs. 36809 records in RAM. INFO 2026-06-08 09:00:22 MarkDuplicates Read 648,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chrX:47,586,608 INFO 2026-06-08 09:00:22 MarkDuplicates Tracking 88180 as yet unmatched pairs. 35721 records in RAM. INFO 2026-06-08 09:00:24 MarkDuplicates Read 649,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chrX:49,040,535 INFO 2026-06-08 09:00:24 MarkDuplicates Tracking 83377 as yet unmatched pairs. 30916 records in RAM. INFO 2026-06-08 09:00:25 MarkDuplicates Read 650,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chrX:53,536,230 INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 80369 as yet unmatched pairs. 27907 records in RAM. INFO 2026-06-08 09:00:27 MarkDuplicates Read 651,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chrX:65,529,685 INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 77323 as yet unmatched pairs. 24861 records in RAM. INFO 2026-06-08 09:00:28 MarkDuplicates Read 652,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chrX:71,297,821 INFO 2026-06-08 09:00:28 MarkDuplicates Tracking 74746 as yet unmatched pairs. 22283 records in RAM. INFO 2026-06-08 09:00:29 MarkDuplicates Read 653,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chrX:77,899,586 INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 72131 as yet unmatched pairs. 19667 records in RAM. INFO 2026-06-08 09:00:31 MarkDuplicates Read 654,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chrX:103,586,982 INFO 2026-06-08 09:00:31 MarkDuplicates Tracking 69248 as yet unmatched pairs. 16781 records in RAM. INFO 2026-06-08 09:00:32 MarkDuplicates Read 655,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chrX:120,546,579 INFO 2026-06-08 09:00:32 MarkDuplicates Tracking 66444 as yet unmatched pairs. 13977 records in RAM. INFO 2026-06-08 09:00:33 MarkDuplicates Read 656,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chrX:145,448,160 INFO 2026-06-08 09:00:33 MarkDuplicates Tracking 63819 as yet unmatched pairs. 11347 records in RAM. INFO 2026-06-08 09:00:35 MarkDuplicates Read 657,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chrX:153,740,589 INFO 2026-06-08 09:00:35 MarkDuplicates Tracking 61171 as yet unmatched pairs. 8694 records in RAM. INFO 2026-06-08 09:00:36 MarkDuplicates Read 658,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chrX:154,354,176 INFO 2026-06-08 09:00:36 MarkDuplicates Tracking 58168 as yet unmatched pairs. 5691 records in RAM. INFO 2026-06-08 09:00:38 MarkDuplicates Read 659,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chrX:154,450,449 INFO 2026-06-08 09:00:38 MarkDuplicates Tracking 54656 as yet unmatched pairs. 2179 records in RAM. INFO 2026-06-08 09:00:39 MarkDuplicates Read 660,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chrY:18,992,439 INFO 2026-06-08 09:00:39 MarkDuplicates Tracking 52268 as yet unmatched pairs. 125 records in RAM. INFO 2026-06-08 09:00:40 MarkDuplicates Read 661,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,152 INFO 2026-06-08 09:00:40 MarkDuplicates Tracking 51407 as yet unmatched pairs. 6876 records in RAM. INFO 2026-06-08 09:00:41 MarkDuplicates Read 662,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 0s. Last read position: GL000220.1:114,183 INFO 2026-06-08 09:00:41 MarkDuplicates Tracking 51468 as yet unmatched pairs. 6937 records in RAM. INFO 2026-06-08 09:00:42 MarkDuplicates Read 663,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,533 INFO 2026-06-08 09:00:42 MarkDuplicates Tracking 48851 as yet unmatched pairs. 4319 records in RAM. INFO 2026-06-08 09:00:44 MarkDuplicates Read 664,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: GL000220.1:118,123 INFO 2026-06-08 09:00:44 MarkDuplicates Tracking 44885 as yet unmatched pairs. 353 records in RAM. INFO 2026-06-08 09:00:45 MarkDuplicates Read 665,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,132 INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 44885 as yet unmatched pairs. 352 records in RAM. INFO 2026-06-08 09:00:46 MarkDuplicates Read 666,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,168 INFO 2026-06-08 09:00:46 MarkDuplicates Tracking 44793 as yet unmatched pairs. 260 records in RAM. INFO 2026-06-08 09:00:47 MarkDuplicates Read 667,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 0s. Last read position: GL000220.1:159,539 INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 44551 as yet unmatched pairs. 18 records in RAM. INFO 2026-06-08 09:00:49 MarkDuplicates Read 668,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: KI270733.1:129,822 INFO 2026-06-08 09:00:49 MarkDuplicates Tracking 44437 as yet unmatched pairs. 44423 records in RAM. INFO 2026-06-08 09:00:50 MarkDuplicates Read 669,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,019 INFO 2026-06-08 09:00:50 MarkDuplicates Tracking 19814 as yet unmatched pairs. 19800 records in RAM. INFO 2026-06-08 09:00:52 MarkDuplicates Read 670,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,072 INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 9137 as yet unmatched pairs. 9123 records in RAM. INFO 2026-06-08 09:00:53 MarkDuplicates Read 671,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,611 INFO 2026-06-08 09:00:53 MarkDuplicates Tracking 2294 as yet unmatched pairs. 2280 records in RAM. INFO 2026-06-08 09:00:54 MarkDuplicates Read 672,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,085 INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 597 as yet unmatched pairs. 583 records in RAM. INFO 2026-06-08 09:00:55 MarkDuplicates Read 673,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,111 INFO 2026-06-08 09:00:55 MarkDuplicates Tracking 438 as yet unmatched pairs. 424 records in RAM. INFO 2026-06-08 09:00:56 MarkDuplicates Read 674,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 0s. Last read position: KI270733.1:177,468 INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 82 as yet unmatched pairs. 68 records in RAM. INFO 2026-06-08 09:00:57 MarkDuplicates Read 675,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 0s. Last read position: KI270741.1:28,979 INFO 2026-06-08 09:00:57 MarkDuplicates Tracking 13 as yet unmatched pairs. 0 records in RAM. INFO 2026-06-08 09:00:57 MarkDuplicates Read 675009275 records. 0 pairs never matched. INFO 2026-06-08 09:01:42 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141384; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:01:42 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk. INFO 2026-06-08 09:01:47 MarkDuplicates Traversing read pair information and detecting duplicates. WARNING 2026-06-08 09:01:47 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 09:01:55 OpticalDuplicateFinder Large duplicate set. size = 1082 INFO 2026-06-08 09:01:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,321 INFO 2026-06-08 09:01:55 OpticalDuplicateFinder Large duplicate set. size = 1873 INFO 2026-06-08 09:01:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,383 INFO 2026-06-08 09:01:55 OpticalDuplicateFinder Large duplicate set. size = 2220 INFO 2026-06-08 09:01:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,562 INFO 2026-06-08 09:01:55 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,334 INFO 2026-06-08 09:01:55 OpticalDuplicateFinder Large duplicate set. size = 1958 INFO 2026-06-08 09:01:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,064 INFO 2026-06-08 09:01:55 OpticalDuplicateFinder Large duplicate set. size = 2659 INFO 2026-06-08 09:01:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,225 INFO 2026-06-08 09:01:55 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,630 INFO 2026-06-08 09:01:55 OpticalDuplicateFinder Large duplicate set. size = 1327 INFO 2026-06-08 09:01:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,331 INFO 2026-06-08 09:01:55 OpticalDuplicateFinder Large duplicate set. size = 1285 INFO 2026-06-08 09:01:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,137 INFO 2026-06-08 09:01:58 OpticalDuplicateFinder Large duplicate set. size = 1118 INFO 2026-06-08 09:01:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,951 INFO 2026-06-08 09:01:59 OpticalDuplicateFinder Large duplicate set. size = 1005 INFO 2026-06-08 09:01:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,208 INFO 2026-06-08 09:01:59 OpticalDuplicateFinder Large duplicate set. size = 1534 INFO 2026-06-08 09:01:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,083 INFO 2026-06-08 09:01:59 OpticalDuplicateFinder Large duplicate set. size = 1036 INFO 2026-06-08 09:01:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,834 INFO 2026-06-08 09:02:00 OpticalDuplicateFinder Large duplicate set. size = 1105 INFO 2026-06-08 09:02:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,900 INFO 2026-06-08 09:02:09 OpticalDuplicateFinder Large duplicate set. size = 1521 INFO 2026-06-08 09:02:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,662 INFO 2026-06-08 09:02:15 OpticalDuplicateFinder Large duplicate set. size = 1795 INFO 2026-06-08 09:02:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,665 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder Large duplicate set. size = 1677 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,618 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder Large duplicate set. size = 1469 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,377 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder Large duplicate set. size = 1986 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,745 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder Large duplicate set. size = 1105 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,936 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder Large duplicate set. size = 1498 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,853 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder Large duplicate set. size = 1707 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,302 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder Large duplicate set. size = 1063 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,810 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder Large duplicate set. size = 1472 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,985 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder Large duplicate set. size = 1620 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,212 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder Large duplicate set. size = 1316 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,720 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder Large duplicate set. size = 1060 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,544 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder Large duplicate set. size = 1677 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,645 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder Large duplicate set. size = 2217 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,864 INFO 2026-06-08 09:02:18 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,326 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder Large duplicate set. size = 1368 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,955 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder Large duplicate set. size = 1366 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,809 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder Large duplicate set. size = 1545 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,660 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder Large duplicate set. size = 1069 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,211 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder Large duplicate set. size = 1201 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,233 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder Large duplicate set. size = 1053 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,313 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder Large duplicate set. size = 1269 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,906 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder Large duplicate set. size = 1348 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,653 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder Large duplicate set. size = 1010 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,072 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder Large duplicate set. size = 1073 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,020 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder Large duplicate set. size = 1043 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,917 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder Large duplicate set. size = 1156 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,006 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder Large duplicate set. size = 1312 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,551 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder Large duplicate set. size = 1056 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,726 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder Large duplicate set. size = 1591 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,057 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder Large duplicate set. size = 1908 INFO 2026-06-08 09:02:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,241 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder Large duplicate set. size = 1282 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,278 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder Large duplicate set. size = 1155 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,042 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder Large duplicate set. size = 2098 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,525 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,702 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder Large duplicate set. size = 2285 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,676 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,410 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder Large duplicate set. size = 1063 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,516 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder Large duplicate set. size = 1280 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,888 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder Large duplicate set. size = 1404 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,306 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder Large duplicate set. size = 1095 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,932 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder Large duplicate set. size = 1144 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,516 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder Large duplicate set. size = 1239 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,530 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder Large duplicate set. size = 1277 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,049 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder Large duplicate set. size = 1020 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,017 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder Large duplicate set. size = 1575 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,713 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder Large duplicate set. size = 1468 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,006 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder Large duplicate set. size = 2999 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,633 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,724 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder Large duplicate set. size = 1150 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,431 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder Large duplicate set. size = 1295 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,495 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder Large duplicate set. size = 1270 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,178 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder Large duplicate set. size = 1133 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,650 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder Large duplicate set. size = 1280 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,758 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder Large duplicate set. size = 1132 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,480 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder Large duplicate set. size = 1092 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,388 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder Large duplicate set. size = 2009 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,128 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,397 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder Large duplicate set. size = 1179 INFO 2026-06-08 09:02:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,722 INFO 2026-06-08 09:02:21 OpticalDuplicateFinder Large duplicate set. size = 1307 INFO 2026-06-08 09:02:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,527 INFO 2026-06-08 09:02:21 OpticalDuplicateFinder Large duplicate set. size = 2391 INFO 2026-06-08 09:02:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,741 INFO 2026-06-08 09:02:21 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,273 INFO 2026-06-08 09:02:21 OpticalDuplicateFinder Large duplicate set. size = 1294 INFO 2026-06-08 09:02:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,715 INFO 2026-06-08 09:02:21 OpticalDuplicateFinder Large duplicate set. size = 1018 INFO 2026-06-08 09:02:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,739 INFO 2026-06-08 09:02:21 OpticalDuplicateFinder Large duplicate set. size = 1007 INFO 2026-06-08 09:02:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,912 INFO 2026-06-08 09:02:22 OpticalDuplicateFinder Large duplicate set. size = 1473 INFO 2026-06-08 09:02:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,850 INFO 2026-06-08 09:02:22 OpticalDuplicateFinder Large duplicate set. size = 1232 INFO 2026-06-08 09:02:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,346 INFO 2026-06-08 09:02:22 OpticalDuplicateFinder Large duplicate set. size = 1317 INFO 2026-06-08 09:02:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,885 INFO 2026-06-08 09:02:22 OpticalDuplicateFinder Large duplicate set. size = 1126 INFO 2026-06-08 09:02:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,774 INFO 2026-06-08 09:02:22 OpticalDuplicateFinder Large duplicate set. size = 1501 INFO 2026-06-08 09:02:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,233 INFO 2026-06-08 09:02:22 OpticalDuplicateFinder Large duplicate set. size = 1570 INFO 2026-06-08 09:02:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,598 INFO 2026-06-08 09:02:22 OpticalDuplicateFinder Large duplicate set. size = 1242 INFO 2026-06-08 09:02:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,622 INFO 2026-06-08 09:02:22 OpticalDuplicateFinder Large duplicate set. size = 1068 INFO 2026-06-08 09:02:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,550 INFO 2026-06-08 09:02:22 OpticalDuplicateFinder Large duplicate set. size = 1011 INFO 2026-06-08 09:02:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,869 INFO 2026-06-08 09:02:22 OpticalDuplicateFinder Large duplicate set. size = 1059 INFO 2026-06-08 09:02:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,555 INFO 2026-06-08 09:02:22 OpticalDuplicateFinder Large duplicate set. size = 1168 INFO 2026-06-08 09:02:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,170 INFO 2026-06-08 09:02:23 OpticalDuplicateFinder Large duplicate set. size = 1572 INFO 2026-06-08 09:02:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,078 INFO 2026-06-08 09:02:23 OpticalDuplicateFinder Large duplicate set. size = 1713 INFO 2026-06-08 09:02:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,053 INFO 2026-06-08 09:02:38 OpticalDuplicateFinder Large duplicate set. size = 1353 INFO 2026-06-08 09:02:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,102 INFO 2026-06-08 09:03:05 OpticalDuplicateFinder Large duplicate set. size = 1045 INFO 2026-06-08 09:03:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,258 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder Large duplicate set. size = 1384 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,278 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder Large duplicate set. size = 1097 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,513 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder Large duplicate set. size = 1180 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,847 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder Large duplicate set. size = 1348 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,639 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder Large duplicate set. size = 1149 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,373 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder Large duplicate set. size = 2188 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,457 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,868 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder Large duplicate set. size = 1033 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,238 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder Large duplicate set. size = 1497 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,987 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder Large duplicate set. size = 1237 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,407 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder Large duplicate set. size = 1255 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,637 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder Large duplicate set. size = 1004 INFO 2026-06-08 09:03:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,074 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1364 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,597 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1187 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,530 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1314 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,370 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1367 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,313 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1248 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,739 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1859 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,862 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1212 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,614 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1484 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,404 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1006 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,507 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1553 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,250 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1374 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,137 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1048 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,302 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1277 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,328 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1335 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,748 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1045 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,778 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1287 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,375 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1805 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,960 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1137 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,087 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1493 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,615 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1439 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,117 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1136 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,629 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1232 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,663 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder Large duplicate set. size = 1642 INFO 2026-06-08 09:03:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,668 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1685 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,258 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1061 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,848 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1164 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,925 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1155 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,239 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1219 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,666 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1235 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,882 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1208 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,282 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1013 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,648 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1187 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,909 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1167 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,938 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1121 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,638 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1515 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,986 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1255 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,625 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1035 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,064 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 2253 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,041 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,261 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1434 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,663 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1082 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,430 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1359 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,472 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1211 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,469 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1817 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,616 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1192 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,373 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1048 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,318 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1516 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,515 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1106 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,706 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder Large duplicate set. size = 1016 INFO 2026-06-08 09:03:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,952 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1014 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,708 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1077 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,814 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1087 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,768 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1020 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,079 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1226 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,405 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1655 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,469 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1772 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,914 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1552 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,722 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1579 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,934 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1501 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,409 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1302 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,799 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1345 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,668 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1041 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,983 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1350 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,580 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1138 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,890 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1159 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,380 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1064 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,548 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1798 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,480 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1472 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,362 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1232 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,652 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1249 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,082 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1166 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,405 INFO 2026-06-08 09:03:16 OpticalDuplicateFinder Large duplicate set. size = 1067 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,645 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 2123 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,721 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,070 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1116 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,947 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 3180 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,651 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,860 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,870 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1007 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,521 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1004 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,177 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 3661 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,348 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,868 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,317 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1343 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,991 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1192 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,025 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1117 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,959 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1041 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,046 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1051 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,183 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1470 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,172 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1313 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,058 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1119 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,893 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1027 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,498 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1404 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,542 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1671 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,198 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1736 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,029 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1236 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,618 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1473 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,459 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1138 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,946 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1669 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,939 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 2226 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,322 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,659 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1195 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,347 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1383 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,674 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1429 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,480 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1017 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,080 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1127 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,896 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1502 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,046 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1178 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,471 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1751 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,011 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1045 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,644 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1351 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,325 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1123 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,629 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1139 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,284 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1069 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,033 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder Large duplicate set. size = 1906 INFO 2026-06-08 09:03:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,927 INFO 2026-06-08 09:03:18 OpticalDuplicateFinder Large duplicate set. size = 1326 INFO 2026-06-08 09:03:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,733 INFO 2026-06-08 09:03:18 OpticalDuplicateFinder Large duplicate set. size = 1127 INFO 2026-06-08 09:03:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,405 INFO 2026-06-08 09:03:18 OpticalDuplicateFinder Large duplicate set. size = 1100 INFO 2026-06-08 09:03:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,851 INFO 2026-06-08 09:03:18 OpticalDuplicateFinder Large duplicate set. size = 1026 INFO 2026-06-08 09:03:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,321 INFO 2026-06-08 09:03:18 OpticalDuplicateFinder Large duplicate set. size = 1212 INFO 2026-06-08 09:03:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,161 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1268 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,825 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1187 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,439 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1282 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,216 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1198 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,738 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder Large duplicate set. size = 1217 INFO 2026-06-08 09:03:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,116 INFO 2026-06-08 09:03:33 OpticalDuplicateFinder Large duplicate set. size = 1047 INFO 2026-06-08 09:03:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,120 INFO 2026-06-08 09:03:33 OpticalDuplicateFinder Large duplicate set. size = 1494 INFO 2026-06-08 09:03:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,501 INFO 2026-06-08 09:03:33 OpticalDuplicateFinder Large duplicate set. size = 1014 INFO 2026-06-08 09:03:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,566 INFO 2026-06-08 09:03:33 OpticalDuplicateFinder Large duplicate set. size = 1206 INFO 2026-06-08 09:03:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,079 INFO 2026-06-08 09:03:38 OpticalDuplicateFinder Large duplicate set. size = 1046 INFO 2026-06-08 09:03:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,925 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 2120 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,097 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,268 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 2797 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,037 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,110 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 2426 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,191 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,188 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 2903 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,390 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,721 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1013 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,613 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1285 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,346 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 2527 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,432 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,131 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 3158 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,254 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,482 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,315 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 3038 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,698 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,356 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,152 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 3042 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,730 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,950 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,228 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1046 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,287 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1687 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,552 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1948 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,670 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1659 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,044 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1889 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,110 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1874 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,577 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 3287 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,511 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,473 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,609 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 3758 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,119 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,760 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,183 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 3075 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,017 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,839 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,922 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 3586 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,214 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,658 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,571 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1537 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,380 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1078 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,810 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1297 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,757 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1004 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,515 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1412 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,967 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1873 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,969 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 2944 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,922 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,419 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 2726 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,124 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,690 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 2450 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,857 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,864 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 3683 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,210 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,178 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,125 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1666 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,680 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1257 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,252 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1931 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,113 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1793 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,816 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1674 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,409 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 2550 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,084 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,012 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1207 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,667 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1083 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,003 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1027 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,247 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1931 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,929 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 2619 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,120 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,108 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 2766 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,299 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,416 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 2502 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,721 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,790 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 3930 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,183 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,019 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,561 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 2181 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,431 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,114 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1105 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,726 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1181 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,251 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1031 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,890 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1816 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,170 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1072 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,733 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1375 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,055 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1276 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,023 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1327 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,688 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1203 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,818 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 2286 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,301 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,218 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1312 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,654 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 1704 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,022 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 2888 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,228 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,978 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 3933 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,691 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,357 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,875 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 4040 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,179 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,877 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,727 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,875 INFO 2026-06-08 09:03:39 OpticalDuplicateFinder Large duplicate set. size = 3937 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,629 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,192 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,188 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 6993 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,015 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,131 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,985 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,450 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 5,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,686 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 6,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,571 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 1346 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,234 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 1430 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,740 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 4130 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,271 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,112 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,374 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,390 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 1149 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,912 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 1181 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,376 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 1241 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,954 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 1926 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,831 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 2885 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,604 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,830 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 2994 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,157 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,087 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 2899 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,990 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,155 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 5074 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,939 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,611 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,864 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,988 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 5,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,219 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 1033 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,883 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 1069 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,038 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 3089 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,880 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,816 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,258 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 1138 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,333 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 1276 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,539 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 1205 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,673 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 1337 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,078 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 1279 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,963 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 1494 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,165 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 2399 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,374 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,748 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 1051 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,484 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 1604 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,720 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 1204 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,019 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 1019 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,656 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 1240 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,072 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 1001 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,877 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 1386 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,632 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 1054 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,557 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 1311 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,084 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder Large duplicate set. size = 1050 INFO 2026-06-08 09:03:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,129 INFO 2026-06-08 09:03:40 MarkDuplicates Traversing fragment information and detecting duplicates. WARNING 2026-06-08 09:03:40 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 09:04:44 MarkDuplicates Sorting list of duplicate records. INFO 2026-06-08 09:04:52 MarkDuplicates After generateDuplicateIndexes freeMemory: 203833528; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:04:52 MarkDuplicates Marking 436771186 records as duplicates. INFO 2026-06-08 09:04:52 MarkDuplicates Found 6686302 optical duplicate clusters. INFO 2026-06-08 09:04:52 MarkDuplicates Reads are assumed to be ordered by: coordinate INFO 2026-06-08 09:05:09 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:26,729,737 INFO 2026-06-08 09:05:24 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:31s. Time for last 10,000,000: 15s. Last read position: chr1:94,926,901 INFO 2026-06-08 09:05:39 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:46s. Time for last 10,000,000: 15s. Last read position: chr1:154,176,121 INFO 2026-06-08 09:05:55 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:02s. Time for last 10,000,000: 15s. Last read position: chr1:183,549,787 INFO 2026-06-08 09:06:10 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:17s. Time for last 10,000,000: 15s. Last read position: chr2:20,263,193 INFO 2026-06-08 09:06:25 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:32s. Time for last 10,000,000: 14s. Last read position: chr2:38,343,229 INFO 2026-06-08 09:06:40 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:48s. Time for last 10,000,000: 15s. Last read position: chr2:107,843,596 INFO 2026-06-08 09:06:56 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:03s. Time for last 10,000,000: 15s. Last read position: chr2:199,323,840 INFO 2026-06-08 09:07:11 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:18s. Time for last 10,000,000: 15s. Last read position: chr2:215,433,378 INFO 2026-06-08 09:07:27 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:34s. Time for last 10,000,000: 15s. Last read position: chr3:12,941,689 INFO 2026-06-08 09:07:42 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:49s. Time for last 10,000,000: 15s. Last read position: chr3:78,627,384 INFO 2026-06-08 09:07:57 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:04s. Time for last 10,000,000: 15s. Last read position: chr3:194,652,899 INFO 2026-06-08 09:08:12 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:20s. Time for last 10,000,000: 15s. Last read position: chr4:73,415,072 INFO 2026-06-08 09:08:28 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:35s. Time for last 10,000,000: 15s. Last read position: chr5:482,072 INFO 2026-06-08 09:08:43 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:50s. Time for last 10,000,000: 15s. Last read position: chr5:134,927,090 INFO 2026-06-08 09:08:58 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:05s. Time for last 10,000,000: 15s. Last read position: chr5:177,524,348 INFO 2026-06-08 09:09:13 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:21s. Time for last 10,000,000: 15s. Last read position: chr6:31,271,849 INFO 2026-06-08 09:09:29 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:36s. Time for last 10,000,000: 15s. Last read position: chr6:43,539,627 INFO 2026-06-08 09:09:44 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:04:51s. Time for last 10,000,000: 15s. Last read position: chr6:158,769,813 INFO 2026-06-08 09:09:59 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:06s. Time for last 10,000,000: 15s. Last read position: chr7:33,000,174 INFO 2026-06-08 09:10:15 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:22s. Time for last 10,000,000: 15s. Last read position: chr7:94,411,055 INFO 2026-06-08 09:10:30 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:37s. Time for last 10,000,000: 15s. Last read position: chr7:100,993,883 INFO 2026-06-08 09:10:45 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:05:52s. Time for last 10,000,000: 15s. Last read position: chr7:100,996,751 INFO 2026-06-08 09:11:00 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:07s. Time for last 10,000,000: 14s. Last read position: chr7:100,998,848 INFO 2026-06-08 09:11:15 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:22s. Time for last 10,000,000: 14s. Last read position: chr7:101,001,292 INFO 2026-06-08 09:11:29 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:36s. Time for last 10,000,000: 14s. Last read position: chr7:101,163,214 INFO 2026-06-08 09:11:44 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:06:51s. Time for last 10,000,000: 15s. Last read position: chr7:155,800,021 INFO 2026-06-08 09:12:00 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:07s. Time for last 10,000,000: 15s. Last read position: chr8:100,948,630 INFO 2026-06-08 09:12:15 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:22s. Time for last 10,000,000: 15s. Last read position: chr8:143,865,714 INFO 2026-06-08 09:12:30 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:37s. Time for last 10,000,000: 15s. Last read position: chr9:69,734,191 INFO 2026-06-08 09:12:45 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:07:52s. Time for last 10,000,000: 15s. Last read position: chr9:128,169,500 INFO 2026-06-08 09:13:00 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:08s. Time for last 10,000,000: 15s. Last read position: chr10:812,922 INFO 2026-06-08 09:13:16 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:23s. Time for last 10,000,000: 15s. Last read position: chr10:87,232,643 INFO 2026-06-08 09:13:31 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:08:38s. Time for last 10,000,000: 15s. Last read position: chr10:122,614,041 INFO 2026-06-08 09:13:46 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:08:53s. Time for last 10,000,000: 15s. Last read position: chr11:46,397,795 INFO 2026-06-08 09:14:01 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:08s. Time for last 10,000,000: 15s. Last read position: chr11:65,655,700 INFO 2026-06-08 09:14:16 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:23s. Time for last 10,000,000: 15s. Last read position: chr11:114,059,666 INFO 2026-06-08 09:14:32 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:09:39s. Time for last 10,000,000: 15s. Last read position: chr12:9,101,144 INFO 2026-06-08 09:14:47 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:09:54s. Time for last 10,000,000: 15s. Last read position: chr12:56,004,481 INFO 2026-06-08 09:15:02 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:09s. Time for last 10,000,000: 15s. Last read position: chr12:112,917,612 INFO 2026-06-08 09:15:17 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:24s. Time for last 10,000,000: 15s. Last read position: chr13:75,362,591 INFO 2026-06-08 09:15:32 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:10:39s. Time for last 10,000,000: 15s. Last read position: chr14:64,487,537 INFO 2026-06-08 09:15:48 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:10:55s. Time for last 10,000,000: 15s. Last read position: chr15:39,582,576 INFO 2026-06-08 09:16:03 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:10s. Time for last 10,000,000: 15s. Last read position: chr15:84,862,699 INFO 2026-06-08 09:16:18 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:11:25s. Time for last 10,000,000: 15s. Last read position: chr16:4,441,554 INFO 2026-06-08 09:16:33 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:11:40s. Time for last 10,000,000: 15s. Last read position: chr16:22,534,406 INFO 2026-06-08 09:16:49 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:11:56s. Time for last 10,000,000: 15s. Last read position: chr16:31,183,874 INFO 2026-06-08 09:17:04 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:11s. Time for last 10,000,000: 15s. Last read position: chr16:85,920,094 INFO 2026-06-08 09:17:19 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:12:27s. Time for last 10,000,000: 15s. Last read position: chr17:16,382,446 INFO 2026-06-08 09:17:34 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:12:42s. Time for last 10,000,000: 15s. Last read position: chr17:40,389,567 INFO 2026-06-08 09:17:50 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:12:57s. Time for last 10,000,000: 15s. Last read position: chr17:50,188,784 INFO 2026-06-08 09:18:05 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:12s. Time for last 10,000,000: 15s. Last read position: chr17:50,195,960 INFO 2026-06-08 09:18:21 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:13:28s. Time for last 10,000,000: 15s. Last read position: chr17:73,724,658 INFO 2026-06-08 09:18:36 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:13:43s. Time for last 10,000,000: 15s. Last read position: chr18:12,329,159 INFO 2026-06-08 09:18:51 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:13:58s. Time for last 10,000,000: 15s. Last read position: chr19:5,788,100 INFO 2026-06-08 09:19:06 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:14:13s. Time for last 10,000,000: 15s. Last read position: chr19:15,239,154 INFO 2026-06-08 09:19:22 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:14:29s. Time for last 10,000,000: 15s. Last read position: chr19:38,717,950 INFO 2026-06-08 09:19:37 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:14:44s. Time for last 10,000,000: 15s. Last read position: chr19:42,294,900 INFO 2026-06-08 09:19:52 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:14:59s. Time for last 10,000,000: 15s. Last read position: chr19:52,211,479 INFO 2026-06-08 09:20:07 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:15:14s. Time for last 10,000,000: 15s. Last read position: chr20:34,295,503 INFO 2026-06-08 09:20:22 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:15:29s. Time for last 10,000,000: 15s. Last read position: chr21:5,033,792 INFO 2026-06-08 09:20:35 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:15:43s. Time for last 10,000,000: 13s. Last read position: chr21:8,442,277 INFO 2026-06-08 09:20:50 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:15:57s. Time for last 10,000,000: 14s. Last read position: chr21:46,122,506 INFO 2026-06-08 09:21:05 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:16:12s. Time for last 10,000,000: 15s. Last read position: chr22:40,322,991 INFO 2026-06-08 09:21:21 MarkDuplicates Written 650,000,000 records. Elapsed time: 00:16:28s. Time for last 10,000,000: 15s. Last read position: chrX:53,536,230 INFO 2026-06-08 09:21:36 MarkDuplicates Written 660,000,000 records. Elapsed time: 00:16:43s. Time for last 10,000,000: 15s. Last read position: chrY:18,992,439 INFO 2026-06-08 09:21:49 MarkDuplicates Written 670,000,000 records. Elapsed time: 00:16:56s. Time for last 10,000,000: 13s. Last read position: KI270733.1:131,072 INFO 2026-06-08 09:22:06 MarkDuplicates Writing complete. Closing input iterator. INFO 2026-06-08 09:22:06 MarkDuplicates Duplicate Index cleanup. INFO 2026-06-08 09:22:06 MarkDuplicates Getting Memory Stats. INFO 2026-06-08 09:22:06 MarkDuplicates Before output close freeMemory: 203776904; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:22:06 MarkDuplicates Closed outputs. Getting more Memory Stats. INFO 2026-06-08 09:22:06 MarkDuplicates After output close freeMemory: 104032272; totalMemory: 134217728; maxMemory: 63585648640 [Mon Jun 08 09:22:06 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 41.63 minutes. Runtime.totalMemory()=134217728 ls: *cram: No such file or directory ls: *.crai: No such file or directory