File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/2dcc3c07db5ceb8d267a9191e0964d/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (1173_FM_T1_RNA_SLD_01_A23T55JLT4_2)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/e62b9d0557526074510103c66105df/1173_FM_T1_RNA_SLD_01_A23T55JLT4_2
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/2dcc3c07db5ceb8d267a9191e0964d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/2dcc3c07db5ceb8d267a9191e0964d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/703ba74b172363f5c5fec94e817054/1173_FM_T1_RNA_SLD_01_A23T55JLT4_2.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 1173_FM_T1_RNA_SLD_01_A23T55JLT4_2/abundance.h5
Successfully converted 1173_FM_T1_RNA_SLD_01_A23T55JLT4_2/abundance.h5 to 1173_FM_T1_RNA_SLD_01_A23T55JLT4_2_kallisto_mqc.tsv
  Sample: 1173_FM_T1_RNA_SLD_01_A23T55JLT4_2
  Mean Fragment Length: 107.8 bp
  Median Fragment Length: 102.0 bp
  pct_mito_est_counts: 0.014%
  pct_ribo_est_counts: 0.724%
  pct_hk_est_counts: 0.54%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.028%
  pct_ribo_tpm: 2.19%
  pct_hk_tpm: 0.87%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.013%