Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/7e2060b61b015fde33ec680ac9eda1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/7e2060b61b015fde33ec680ac9eda1/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/blacklist_breakpoint_database_2026-04-27.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/f3d89dc2fe6fbf9ca14e2b8928a4f4/1173_KRT_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-fe242a7f-c5b9-4d3f-88fa-f3e739280d3a/0e/64006b836d7933c012afba79f66ebb/arriba_filter_config.yaml
==> STAGING COMPLETE (5 inputs)

  AIH curated blacklist: matched 0 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 4
  Pass (FILTER=PASS): 0 (0.0%)
  Fail (FILTER=FAIL): 4 (100.0%)

Failure reasons (top 15):
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 2
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 2

Breakdown by confidence:
  low: 0 pass, 2 fail (total: 2)
  medium: 0 pass, 2 fail (total: 2)
Arriba filter: 4 rows -> 0 PASS; wrote 1173_KRT_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered.tsv and 1173_KRT_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: 1173_KRT_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filter_summary.txt