Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/19a2adb1e26fc72e356badf0995a93/1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/aa24b4f128425dd8a64d89bcce66f6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/aa24b4f128425dd8a64d89bcce66f6/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 289829991
unpaired = 6490690
MERGED PAIRED END READS = 289829991
MATES PROCESSED = 586150672
TOTAL READS     = 296320681
DISTINCT READS  = 1.40519e+08
DISTINCT COUNTS = 985
MAX COUNT       = 1513592
COUNTS OF 1     = 7.86922e+07
MAX TERMS       = 100
OBSERVED COUNTS (1513593)
1	78692203
2	32113474
3	13827469
4	6426780
5	3275744
6	1836485
7	1118932
8	728485
9	503308
10	360884
11	269725
12	206765
13	161871
14	129130
15	104909
16	87012
17	72054
18	61214
19	52059
20	45053
21	38939
22	33801
23	29553
24	26246
25	23389
26	20659
27	18467
28	16916
29	15169
30	13663
31	12316
32	11321
33	10438
34	9489
35	8715
36	8163
37	7508
38	6765
39	6324
40	5896
41	5524
42	5117
43	4802
44	4443
45	4267
46	4057
47	3731
48	3503
49	3202
50	3124
51	2943
52	2802
53	2629
54	2471
55	2366
56	2231
57	2141
58	2011
59	1917
60	1803
61	1764
62	1660
63	1604
64	1517
65	1462
66	1366
67	1356
68	1266
69	1283
70	1117
71	1173
72	1043
73	1020
74	962
75	963
76	925
77	924
78	915
79	791
80	817
81	780
82	763
83	700
84	690
85	694
86	635
87	634
88	621
89	569
90	535
91	565
92	518
93	565
94	476
95	496
96	459
97	443
98	453
99	418
100	427
101	421
102	396
103	382
104	367
105	384
106	348
107	298
108	325
109	327
110	311
111	304
112	276
113	294
114	290
115	275
116	269
117	281
118	239
119	242
120	228
121	243
122	238
123	237
124	203
125	231
126	188
127	195
128	202
129	211
130	171
131	192
132	176
133	194
134	157
135	185
136	179
137	151
138	145
139	137
140	154
141	148
142	131
143	136
144	143
145	142
146	150
147	124
148	128
149	132
150	126
151	153
152	132
153	112
154	123
155	118
156	118
157	91
158	110
159	108
160	116
161	92
162	91
163	100
164	85
165	101
166	77
167	93
168	94
169	85
170	103
171	86
172	97
173	91
174	82
175	89
176	96
177	80
178	67
179	66
180	68
181	73
182	84
183	71
184	68
185	59
186	69
187	73
188	62
189	62
190	64
191	78
192	60
193	49
194	53
195	50
196	50
197	65
198	45
199	44
200	61
201	57
202	56
203	69
204	61
205	48
206	57
207	42
208	43
209	42
210	54
211	50
212	36
213	45
214	49
215	51
216	30
217	40
218	44
219	35
220	42
221	34
222	37
223	44
224	33
225	25
226	41
227	43
228	36
229	41
230	38
231	37
232	30
233	34
234	38
235	29
236	35
237	32
238	30
239	24
240	26
241	23
242	32
243	22
244	33
245	18
246	28
247	27
248	29
249	32
250	20
251	29
252	29
253	26
254	37
255	22
256	24
257	16
258	20
259	19
260	25
261	23
262	28
263	24
264	18
265	16
266	22
267	21
268	24
269	21
270	20
271	23
272	27
273	23
274	26
275	21
276	24
277	14
278	15
279	12
280	20
281	14
282	8
283	19
284	20
285	13
286	14
287	21
288	17
289	17
290	21
291	19
292	17
293	17
294	15
295	12
296	16
297	18
298	8
299	24
300	16
301	18
302	20
303	21
304	5
305	10
306	18
307	14
308	14
309	20
310	15
311	12
312	16
313	7
314	17
315	16
316	14
317	10
318	10
319	19
320	17
321	19
322	14
323	22
324	8
325	15
326	9
327	20
328	12
329	7
330	8
331	16
332	15
333	16
334	16
335	10
336	11
337	15
338	15
339	13
340	8
341	8
342	12
343	7
344	10
345	14
346	7
347	16
348	7
349	10
350	11
351	12
352	11
353	8
354	7
355	7
356	9
357	13
358	9
359	3
360	12
361	10
362	8
363	8
364	9
365	9
366	9
367	9
368	10
369	9
370	6
371	10
372	8
373	7
374	7
375	11
376	3
377	12
378	8
379	8
380	10
381	6
382	5
383	8
384	8
385	8
386	8
387	6
388	6
389	6
390	3
391	6
392	10
393	5
394	4
395	5
396	2
397	8
398	3
399	6
400	2
401	7
402	4
403	9
404	4
405	7
406	6
407	4
408	9
409	8
410	9
411	6
413	8
414	1
415	5
416	5
417	8
418	3
419	7
420	7
421	6
422	6
423	4
424	6
425	6
426	1
427	3
428	2
429	4
430	5
431	4
432	9
433	6
434	4
435	6
436	3
437	4
438	7
439	13
440	4
441	2
442	4
443	4
444	3
445	6
446	4
447	3
448	4
449	5
450	7
451	5
452	2
453	5
454	4
455	3
456	3
457	6
458	5
459	8
460	2
461	4
462	7
463	2
464	5
465	6
466	1
467	6
469	6
470	7
471	4
472	8
473	5
474	6
476	6
477	2
479	3
480	8
481	4
482	4
484	2
485	3
486	6
487	7
488	4
489	3
490	4
491	6
492	6
493	3
494	4
496	6
497	4
498	4
499	4
500	2
501	2
502	2
503	5
504	1
505	5
506	3
507	3
508	2
509	4
510	6
511	4
512	4
513	3
514	2
515	4
516	3
517	4
518	2
519	3
520	3
521	3
522	4
523	6
524	3
525	3
526	3
527	1
528	2
529	3
530	1
531	1
532	2
533	4
534	4
535	3
536	3
537	4
538	3
539	4
540	4
541	3
542	1
543	1
544	1
545	3
546	6
547	4
548	5
549	2
550	2
551	1
553	1
554	2
555	4
556	4
557	1
560	2
561	2
562	4
563	2
564	2
565	2
566	4
567	1
568	3
569	2
570	2
571	3
572	2
573	2
574	1
575	1
576	1
577	2
579	4
580	1
581	3
582	3
584	1
585	2
586	3
587	2
588	1
589	3
590	3
591	2
592	1
593	3
594	3
595	4
596	2
597	5
598	1
599	2
600	2
601	4
603	2
604	2
605	2
606	2
607	2
609	1
611	2
613	4
617	2
618	1
619	4
620	1
621	3
622	4
623	2
625	1
626	1
627	2
628	2
630	3
631	1
632	1
633	3
634	2
636	1
639	1
640	1
645	2
646	2
649	3
650	1
652	3
653	3
654	2
656	2
657	2
661	1
662	1
663	2
664	6
665	2
667	1
668	4
669	1
671	1
672	2
675	3
676	3
678	3
679	2
680	1
682	1
683	1
684	4
685	2
687	1
689	2
692	2
693	1
694	1
695	2
696	4
697	1
699	1
701	1
703	2
705	4
708	1
709	1
710	1
711	1
712	4
713	1
715	1
717	1
718	2
719	1
720	1
721	1
723	3
727	2
730	2
731	1
732	1
733	1
734	1
735	1
739	2
740	2
741	3
742	1
743	3
744	1
745	1
746	2
747	1
750	2
751	1
752	1
753	2
754	4
756	1
758	1
760	1
762	3
763	1
764	3
765	1
766	2
767	2
768	2
770	1
771	1
772	1
773	3
774	1
776	1
777	1
778	2
779	1
780	2
782	2
783	1
784	1
788	1
790	1
791	2
792	1
793	1
796	1
797	2
798	2
799	1
802	1
803	1
805	1
806	1
807	1
808	1
810	1
812	1
814	1
819	1
822	1
826	1
827	1
829	1
831	2
832	1
833	1
834	1
835	2
836	2
837	4
838	1
840	1
842	1
846	1
851	1
852	1
853	2
854	1
856	1
857	1
859	1
861	1
868	1
869	1
871	1
874	1
875	1
879	2
881	1
884	1
885	1
887	1
890	1
893	1
897	1
902	1
903	1
904	1
905	1
906	2
907	1
908	1
909	1
911	1
916	1
921	3
923	1
924	1
925	2
926	2
931	1
932	1
935	1
937	1
939	1
940	1
942	2
944	1
946	2
947	2
949	1
954	1
958	1
959	1
961	1
962	1
970	1
972	1
977	1
984	1
986	1
992	2
995	1
1001	1
1003	1
1015	1
1020	1
1024	1
1040	2
1049	1
1050	1
1051	1
1052	2
1053	2
1054	1
1058	1
1059	2
1060	1
1062	1
1067	2
1068	2
1069	2
1071	1
1083	1
1089	1
1099	1
1105	1
1108	1
1120	1
1122	2
1123	1
1128	2
1129	1
1131	1
1140	2
1141	1
1145	1
1151	1
1155	1
1160	1
1171	1
1181	1
1191	2
1197	1
1201	1
1213	1
1214	1
1226	1
1231	1
1232	1
1233	1
1237	1
1241	1
1258	1
1259	1
1263	1
1268	2
1272	1
1273	1
1274	1
1283	1
1294	1
1295	1
1299	1
1306	1
1307	1
1318	1
1338	2
1339	1
1341	1
1380	1
1396	1
1401	2
1407	1
1410	1
1412	1
1416	1
1429	1
1431	1
1435	1
1439	1
1440	1
1442	1
1445	1
1488	1
1518	1
1525	1
1531	1
1544	1
1549	1
1567	1
1571	1
1578	1
1579	1
1588	1
1608	1
1612	2
1621	1
1636	1
1639	1
1681	1
1697	1
1712	1
1714	1
1729	1
1752	1
1755	1
1774	1
1793	1
1811	1
1831	1
1861	1
1864	1
1867	1
1874	1
1885	1
1899	1
1951	1
2036	1
2057	1
2060	1
2135	1
2139	1
2147	1
2224	1
2244	1
2251	1
2319	1
2330	1
2345	1
2427	1
2489	1
2540	1
2553	1
2554	2
2617	1
2672	1
2711	2
2720	1
2727	1
2739	1
2776	1
2781	1
2824	1
2882	1
2884	1
2886	1
2887	1
2923	1
2935	1
2994	1
3002	1
3034	1
3038	1
3082	1
3090	1
3143	2
3156	1
3204	1
3263	1
3264	1
3398	1
3446	1
3462	1
3613	1
3620	1
3720	1
3993	1
4060	1
4212	1
4768	1
4952	1
5085	1
5474	1
5485	1
8740	1
15374	1
25875	1
29040	1
97906	1
1513592	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.._......_......._............_...___......_..._.._...._............_.._
............_._._......._.._.._................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]