Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/19a2adb1e26fc72e356badf0995a93/1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/aa24b4f128425dd8a64d89bcce66f6/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/aa24b4f128425dd8a64d89bcce66f6/.command.run ==> STAGING COMPLETE (3 inputs) PAIRED_END_BAM_INPUT Processed 1000000 records Processed 2000000 records Processed 3000000 records Processed 4000000 records Processed 5000000 records Processed 6000000 records Processed 7000000 records Processed 8000000 records Processed 9000000 records Processed 10000000 records Processed 11000000 records Processed 12000000 records Processed 13000000 records Processed 14000000 records Processed 15000000 records Processed 16000000 records Processed 17000000 records Processed 18000000 records Processed 19000000 records Processed 20000000 records Processed 21000000 records Processed 22000000 records Processed 23000000 records Processed 24000000 records Processed 25000000 records Processed 26000000 records Processed 27000000 records Processed 28000000 records Processed 29000000 records Processed 30000000 records Processed 31000000 records Processed 32000000 records Processed 33000000 records Processed 34000000 records Processed 35000000 records Processed 36000000 records Processed 37000000 records Processed 38000000 records Processed 39000000 records Processed 40000000 records Processed 41000000 records Processed 42000000 records Processed 43000000 records Processed 44000000 records Processed 45000000 records Processed 46000000 records Processed 47000000 records Processed 48000000 records Processed 49000000 records Processed 50000000 records Processed 51000000 records Processed 52000000 records Processed 53000000 records Processed 54000000 records Processed 55000000 records Processed 56000000 records Processed 57000000 records Processed 58000000 records Processed 59000000 records Processed 60000000 records Processed 61000000 records Processed 62000000 records Processed 63000000 records Processed 64000000 records Processed 65000000 records Processed 66000000 records Processed 67000000 records Processed 68000000 records Processed 69000000 records Processed 70000000 records Processed 71000000 records Processed 72000000 records Processed 73000000 records Processed 74000000 records Processed 75000000 records Processed 76000000 records Processed 77000000 records Processed 78000000 records Processed 79000000 records Processed 80000000 records Processed 81000000 records Processed 82000000 records Processed 83000000 records Processed 84000000 records Processed 85000000 records Processed 86000000 records Processed 87000000 records Processed 88000000 records Processed 89000000 records Processed 90000000 records Processed 91000000 records Processed 92000000 records Processed 93000000 records Processed 94000000 records Processed 95000000 records Processed 96000000 records Processed 97000000 records Processed 98000000 records Processed 99000000 records Processed 100000000 records Processed 101000000 records Processed 102000000 records Processed 103000000 records Processed 104000000 records Processed 105000000 records Processed 106000000 records Processed 107000000 records Processed 108000000 records Processed 109000000 records Processed 110000000 records Processed 111000000 records Processed 112000000 records Processed 113000000 records Processed 114000000 records Processed 115000000 records Processed 116000000 records Processed 117000000 records Processed 118000000 records Processed 119000000 records Processed 120000000 records Processed 121000000 records Processed 122000000 records Processed 123000000 records Processed 124000000 records Processed 125000000 records Processed 126000000 records Processed 127000000 records Processed 128000000 records Processed 129000000 records Processed 130000000 records Processed 131000000 records Processed 132000000 records Processed 133000000 records Processed 134000000 records Processed 135000000 records Processed 136000000 records Processed 137000000 records Processed 138000000 records Processed 139000000 records Processed 140000000 records Processed 141000000 records Processed 142000000 records Processed 143000000 records Processed 144000000 records Processed 145000000 records Processed 146000000 records Processed 147000000 records Processed 148000000 records Processed 149000000 records Processed 150000000 records Processed 151000000 records Processed 152000000 records Processed 153000000 records Processed 154000000 records Processed 155000000 records Processed 156000000 records Processed 157000000 records Processed 158000000 records Processed 159000000 records Processed 160000000 records Processed 161000000 records Processed 162000000 records Processed 163000000 records Processed 164000000 records Processed 165000000 records Processed 166000000 records Processed 167000000 records Processed 168000000 records Processed 169000000 records Processed 170000000 records Processed 171000000 records Processed 172000000 records Processed 173000000 records Processed 174000000 records Processed 175000000 records Processed 176000000 records Processed 177000000 records Processed 178000000 records Processed 179000000 records Processed 180000000 records Processed 181000000 records Processed 182000000 records Processed 183000000 records Processed 184000000 records Processed 185000000 records Processed 186000000 records Processed 187000000 records Processed 188000000 records Processed 189000000 records Processed 190000000 records Processed 191000000 records Processed 192000000 records Processed 193000000 records Processed 194000000 records Processed 195000000 records Processed 196000000 records Processed 197000000 records Processed 198000000 records Processed 199000000 records Processed 200000000 records Processed 201000000 records Processed 202000000 records Processed 203000000 records Processed 204000000 records Processed 205000000 records Processed 206000000 records Processed 207000000 records Processed 208000000 records Processed 209000000 records Processed 210000000 records Processed 211000000 records Processed 212000000 records Processed 213000000 records Processed 214000000 records Processed 215000000 records Processed 216000000 records Processed 217000000 records Processed 218000000 records Processed 219000000 records Processed 220000000 records Processed 221000000 records Processed 222000000 records Processed 223000000 records Processed 224000000 records Processed 225000000 records Processed 226000000 records Processed 227000000 records Processed 228000000 records Processed 229000000 records Processed 230000000 records Processed 231000000 records Processed 232000000 records Processed 233000000 records Processed 234000000 records Processed 235000000 records Processed 236000000 records Processed 237000000 records Processed 238000000 records Processed 239000000 records Processed 240000000 records Processed 241000000 records Processed 242000000 records Processed 243000000 records Processed 244000000 records Processed 245000000 records Processed 246000000 records Processed 247000000 records Processed 248000000 records Processed 249000000 records Processed 250000000 records Processed 251000000 records Processed 252000000 records Processed 253000000 records Processed 254000000 records Processed 255000000 records Processed 256000000 records Processed 257000000 records Processed 258000000 records Processed 259000000 records Processed 260000000 records Processed 261000000 records Processed 262000000 records Processed 263000000 records Processed 264000000 records Processed 265000000 records Processed 266000000 records Processed 267000000 records Processed 268000000 records Processed 269000000 records Processed 270000000 records Processed 271000000 records Processed 272000000 records Processed 273000000 records Processed 274000000 records Processed 275000000 records Processed 276000000 records Processed 277000000 records Processed 278000000 records Processed 279000000 records Processed 280000000 records Processed 281000000 records Processed 282000000 records Processed 283000000 records Processed 284000000 records Processed 285000000 records Processed 286000000 records Processed 287000000 records Processed 288000000 records Processed 289000000 records Processed 290000000 records Processed 291000000 records Processed 292000000 records Processed 293000000 records Processed 294000000 records Processed 295000000 records Processed 296000000 records Processed 297000000 records Processed 298000000 records Processed 299000000 records Processed 300000000 records Processed 301000000 records Processed 302000000 records Processed 303000000 records Processed 304000000 records Processed 305000000 records Processed 306000000 records Processed 307000000 records Processed 308000000 records Processed 309000000 records Processed 310000000 records Processed 311000000 records Processed 312000000 records Processed 313000000 records Processed 314000000 records Processed 315000000 records Processed 316000000 records Processed 317000000 records Processed 318000000 records Processed 319000000 records Processed 320000000 records Processed 321000000 records Processed 322000000 records Processed 323000000 records Processed 324000000 records Processed 325000000 records Processed 326000000 records Processed 327000000 records Processed 328000000 records Processed 329000000 records Processed 330000000 records Processed 331000000 records Processed 332000000 records Processed 333000000 records Processed 334000000 records Processed 335000000 records Processed 336000000 records Processed 337000000 records Processed 338000000 records Processed 339000000 records Processed 340000000 records Processed 341000000 records Processed 342000000 records Processed 343000000 records Processed 344000000 records Processed 345000000 records Processed 346000000 records Processed 347000000 records Processed 348000000 records Processed 349000000 records Processed 350000000 records Processed 351000000 records Processed 352000000 records Processed 353000000 records Processed 354000000 records Processed 355000000 records Processed 356000000 records Processed 357000000 records Processed 358000000 records Processed 359000000 records Processed 360000000 records Processed 361000000 records Processed 362000000 records Processed 363000000 records Processed 364000000 records Processed 365000000 records Processed 366000000 records Processed 367000000 records Processed 368000000 records Processed 369000000 records Processed 370000000 records Processed 371000000 records Processed 372000000 records Processed 373000000 records Processed 374000000 records Processed 375000000 records Processed 376000000 records Processed 377000000 records Processed 378000000 records Processed 379000000 records Processed 380000000 records Processed 381000000 records Processed 382000000 records Processed 383000000 records Processed 384000000 records Processed 385000000 records Processed 386000000 records Processed 387000000 records Processed 388000000 records Processed 389000000 records Processed 390000000 records Processed 391000000 records Processed 392000000 records Processed 393000000 records Processed 394000000 records Processed 395000000 records Processed 396000000 records Processed 397000000 records Processed 398000000 records Processed 399000000 records Processed 400000000 records Processed 401000000 records Processed 402000000 records Processed 403000000 records Processed 404000000 records Processed 405000000 records Processed 406000000 records Processed 407000000 records Processed 408000000 records Processed 409000000 records Processed 410000000 records Processed 411000000 records Processed 412000000 records Processed 413000000 records Processed 414000000 records Processed 415000000 records Processed 416000000 records Processed 417000000 records Processed 418000000 records Processed 419000000 records Processed 420000000 records Processed 421000000 records Processed 422000000 records Processed 423000000 records Processed 424000000 records Processed 425000000 records Processed 426000000 records Processed 427000000 records Processed 428000000 records Processed 429000000 records Processed 430000000 records Processed 431000000 records Processed 432000000 records Processed 433000000 records Processed 434000000 records Processed 435000000 records Processed 436000000 records Processed 437000000 records Processed 438000000 records Processed 439000000 records Processed 440000000 records Processed 441000000 records Processed 442000000 records Processed 443000000 records Processed 444000000 records Processed 445000000 records Processed 446000000 records Processed 447000000 records Processed 448000000 records Processed 449000000 records Processed 450000000 records Processed 451000000 records Processed 452000000 records Processed 453000000 records Processed 454000000 records Processed 455000000 records Processed 456000000 records Processed 457000000 records Processed 458000000 records Processed 459000000 records Processed 460000000 records Processed 461000000 records Processed 462000000 records Processed 463000000 records Processed 464000000 records Processed 465000000 records Processed 466000000 records Processed 467000000 records Processed 468000000 records Processed 469000000 records Processed 470000000 records Processed 471000000 records Processed 472000000 records Processed 473000000 records Processed 474000000 records Processed 475000000 records Processed 476000000 records Processed 477000000 records Processed 478000000 records Processed 479000000 records Processed 480000000 records Processed 481000000 records Processed 482000000 records Processed 483000000 records Processed 484000000 records Processed 485000000 records Processed 486000000 records Processed 487000000 records Processed 488000000 records Processed 489000000 records Processed 490000000 records Processed 491000000 records Processed 492000000 records Processed 493000000 records Processed 494000000 records Processed 495000000 records Processed 496000000 records Processed 497000000 records Processed 498000000 records Processed 499000000 records Processed 500000000 records Processed 501000000 records Processed 502000000 records Processed 503000000 records Processed 504000000 records Processed 505000000 records Processed 506000000 records Processed 507000000 records Processed 508000000 records Processed 509000000 records Processed 510000000 records Processed 511000000 records Processed 512000000 records Processed 513000000 records Processed 514000000 records Processed 515000000 records Processed 516000000 records Processed 517000000 records Processed 518000000 records Processed 519000000 records Processed 520000000 records Processed 521000000 records Processed 522000000 records Processed 523000000 records Processed 524000000 records Processed 525000000 records Processed 526000000 records Processed 527000000 records Processed 528000000 records Processed 529000000 records Processed 530000000 records Processed 531000000 records Processed 532000000 records Processed 533000000 records Processed 534000000 records Processed 535000000 records Processed 536000000 records Processed 537000000 records Processed 538000000 records Processed 539000000 records Processed 540000000 records Processed 541000000 records Processed 542000000 records Processed 543000000 records Processed 544000000 records Processed 545000000 records Processed 546000000 records Processed 547000000 records Processed 548000000 records Processed 549000000 records Processed 550000000 records Processed 551000000 records Processed 552000000 records Processed 553000000 records Processed 554000000 records Processed 555000000 records Processed 556000000 records Processed 557000000 records Processed 558000000 records Processed 559000000 records Processed 560000000 records Processed 561000000 records Processed 562000000 records Processed 563000000 records Processed 564000000 records Processed 565000000 records Processed 566000000 records Processed 567000000 records Processed 568000000 records Processed 569000000 records Processed 570000000 records Processed 571000000 records Processed 572000000 records Processed 573000000 records Processed 574000000 records Processed 575000000 records Processed 576000000 records Processed 577000000 records Processed 578000000 records Processed 579000000 records Processed 580000000 records Processed 581000000 records Processed 582000000 records Processed 583000000 records Processed 584000000 records Processed 585000000 records Processed 586000000 records paired = 289829991 unpaired = 6490690 MERGED PAIRED END READS = 289829991 MATES PROCESSED = 586150672 TOTAL READS = 296320681 DISTINCT READS = 1.40519e+08 DISTINCT COUNTS = 985 MAX COUNT = 1513592 COUNTS OF 1 = 7.86922e+07 MAX TERMS = 100 OBSERVED COUNTS (1513593) 1 78692203 2 32113474 3 13827469 4 6426780 5 3275744 6 1836485 7 1118932 8 728485 9 503308 10 360884 11 269725 12 206765 13 161871 14 129130 15 104909 16 87012 17 72054 18 61214 19 52059 20 45053 21 38939 22 33801 23 29553 24 26246 25 23389 26 20659 27 18467 28 16916 29 15169 30 13663 31 12316 32 11321 33 10438 34 9489 35 8715 36 8163 37 7508 38 6765 39 6324 40 5896 41 5524 42 5117 43 4802 44 4443 45 4267 46 4057 47 3731 48 3503 49 3202 50 3124 51 2943 52 2802 53 2629 54 2471 55 2366 56 2231 57 2141 58 2011 59 1917 60 1803 61 1764 62 1660 63 1604 64 1517 65 1462 66 1366 67 1356 68 1266 69 1283 70 1117 71 1173 72 1043 73 1020 74 962 75 963 76 925 77 924 78 915 79 791 80 817 81 780 82 763 83 700 84 690 85 694 86 635 87 634 88 621 89 569 90 535 91 565 92 518 93 565 94 476 95 496 96 459 97 443 98 453 99 418 100 427 101 421 102 396 103 382 104 367 105 384 106 348 107 298 108 325 109 327 110 311 111 304 112 276 113 294 114 290 115 275 116 269 117 281 118 239 119 242 120 228 121 243 122 238 123 237 124 203 125 231 126 188 127 195 128 202 129 211 130 171 131 192 132 176 133 194 134 157 135 185 136 179 137 151 138 145 139 137 140 154 141 148 142 131 143 136 144 143 145 142 146 150 147 124 148 128 149 132 150 126 151 153 152 132 153 112 154 123 155 118 156 118 157 91 158 110 159 108 160 116 161 92 162 91 163 100 164 85 165 101 166 77 167 93 168 94 169 85 170 103 171 86 172 97 173 91 174 82 175 89 176 96 177 80 178 67 179 66 180 68 181 73 182 84 183 71 184 68 185 59 186 69 187 73 188 62 189 62 190 64 191 78 192 60 193 49 194 53 195 50 196 50 197 65 198 45 199 44 200 61 201 57 202 56 203 69 204 61 205 48 206 57 207 42 208 43 209 42 210 54 211 50 212 36 213 45 214 49 215 51 216 30 217 40 218 44 219 35 220 42 221 34 222 37 223 44 224 33 225 25 226 41 227 43 228 36 229 41 230 38 231 37 232 30 233 34 234 38 235 29 236 35 237 32 238 30 239 24 240 26 241 23 242 32 243 22 244 33 245 18 246 28 247 27 248 29 249 32 250 20 251 29 252 29 253 26 254 37 255 22 256 24 257 16 258 20 259 19 260 25 261 23 262 28 263 24 264 18 265 16 266 22 267 21 268 24 269 21 270 20 271 23 272 27 273 23 274 26 275 21 276 24 277 14 278 15 279 12 280 20 281 14 282 8 283 19 284 20 285 13 286 14 287 21 288 17 289 17 290 21 291 19 292 17 293 17 294 15 295 12 296 16 297 18 298 8 299 24 300 16 301 18 302 20 303 21 304 5 305 10 306 18 307 14 308 14 309 20 310 15 311 12 312 16 313 7 314 17 315 16 316 14 317 10 318 10 319 19 320 17 321 19 322 14 323 22 324 8 325 15 326 9 327 20 328 12 329 7 330 8 331 16 332 15 333 16 334 16 335 10 336 11 337 15 338 15 339 13 340 8 341 8 342 12 343 7 344 10 345 14 346 7 347 16 348 7 349 10 350 11 351 12 352 11 353 8 354 7 355 7 356 9 357 13 358 9 359 3 360 12 361 10 362 8 363 8 364 9 365 9 366 9 367 9 368 10 369 9 370 6 371 10 372 8 373 7 374 7 375 11 376 3 377 12 378 8 379 8 380 10 381 6 382 5 383 8 384 8 385 8 386 8 387 6 388 6 389 6 390 3 391 6 392 10 393 5 394 4 395 5 396 2 397 8 398 3 399 6 400 2 401 7 402 4 403 9 404 4 405 7 406 6 407 4 408 9 409 8 410 9 411 6 413 8 414 1 415 5 416 5 417 8 418 3 419 7 420 7 421 6 422 6 423 4 424 6 425 6 426 1 427 3 428 2 429 4 430 5 431 4 432 9 433 6 434 4 435 6 436 3 437 4 438 7 439 13 440 4 441 2 442 4 443 4 444 3 445 6 446 4 447 3 448 4 449 5 450 7 451 5 452 2 453 5 454 4 455 3 456 3 457 6 458 5 459 8 460 2 461 4 462 7 463 2 464 5 465 6 466 1 467 6 469 6 470 7 471 4 472 8 473 5 474 6 476 6 477 2 479 3 480 8 481 4 482 4 484 2 485 3 486 6 487 7 488 4 489 3 490 4 491 6 492 6 493 3 494 4 496 6 497 4 498 4 499 4 500 2 501 2 502 2 503 5 504 1 505 5 506 3 507 3 508 2 509 4 510 6 511 4 512 4 513 3 514 2 515 4 516 3 517 4 518 2 519 3 520 3 521 3 522 4 523 6 524 3 525 3 526 3 527 1 528 2 529 3 530 1 531 1 532 2 533 4 534 4 535 3 536 3 537 4 538 3 539 4 540 4 541 3 542 1 543 1 544 1 545 3 546 6 547 4 548 5 549 2 550 2 551 1 553 1 554 2 555 4 556 4 557 1 560 2 561 2 562 4 563 2 564 2 565 2 566 4 567 1 568 3 569 2 570 2 571 3 572 2 573 2 574 1 575 1 576 1 577 2 579 4 580 1 581 3 582 3 584 1 585 2 586 3 587 2 588 1 589 3 590 3 591 2 592 1 593 3 594 3 595 4 596 2 597 5 598 1 599 2 600 2 601 4 603 2 604 2 605 2 606 2 607 2 609 1 611 2 613 4 617 2 618 1 619 4 620 1 621 3 622 4 623 2 625 1 626 1 627 2 628 2 630 3 631 1 632 1 633 3 634 2 636 1 639 1 640 1 645 2 646 2 649 3 650 1 652 3 653 3 654 2 656 2 657 2 661 1 662 1 663 2 664 6 665 2 667 1 668 4 669 1 671 1 672 2 675 3 676 3 678 3 679 2 680 1 682 1 683 1 684 4 685 2 687 1 689 2 692 2 693 1 694 1 695 2 696 4 697 1 699 1 701 1 703 2 705 4 708 1 709 1 710 1 711 1 712 4 713 1 715 1 717 1 718 2 719 1 720 1 721 1 723 3 727 2 730 2 731 1 732 1 733 1 734 1 735 1 739 2 740 2 741 3 742 1 743 3 744 1 745 1 746 2 747 1 750 2 751 1 752 1 753 2 754 4 756 1 758 1 760 1 762 3 763 1 764 3 765 1 766 2 767 2 768 2 770 1 771 1 772 1 773 3 774 1 776 1 777 1 778 2 779 1 780 2 782 2 783 1 784 1 788 1 790 1 791 2 792 1 793 1 796 1 797 2 798 2 799 1 802 1 803 1 805 1 806 1 807 1 808 1 810 1 812 1 814 1 819 1 822 1 826 1 827 1 829 1 831 2 832 1 833 1 834 1 835 2 836 2 837 4 838 1 840 1 842 1 846 1 851 1 852 1 853 2 854 1 856 1 857 1 859 1 861 1 868 1 869 1 871 1 874 1 875 1 879 2 881 1 884 1 885 1 887 1 890 1 893 1 897 1 902 1 903 1 904 1 905 1 906 2 907 1 908 1 909 1 911 1 916 1 921 3 923 1 924 1 925 2 926 2 931 1 932 1 935 1 937 1 939 1 940 1 942 2 944 1 946 2 947 2 949 1 954 1 958 1 959 1 961 1 962 1 970 1 972 1 977 1 984 1 986 1 992 2 995 1 1001 1 1003 1 1015 1 1020 1 1024 1 1040 2 1049 1 1050 1 1051 1 1052 2 1053 2 1054 1 1058 1 1059 2 1060 1 1062 1 1067 2 1068 2 1069 2 1071 1 1083 1 1089 1 1099 1 1105 1 1108 1 1120 1 1122 2 1123 1 1128 2 1129 1 1131 1 1140 2 1141 1 1145 1 1151 1 1155 1 1160 1 1171 1 1181 1 1191 2 1197 1 1201 1 1213 1 1214 1 1226 1 1231 1 1232 1 1233 1 1237 1 1241 1 1258 1 1259 1 1263 1 1268 2 1272 1 1273 1 1274 1 1283 1 1294 1 1295 1 1299 1 1306 1 1307 1 1318 1 1338 2 1339 1 1341 1 1380 1 1396 1 1401 2 1407 1 1410 1 1412 1 1416 1 1429 1 1431 1 1435 1 1439 1 1440 1 1442 1 1445 1 1488 1 1518 1 1525 1 1531 1 1544 1 1549 1 1567 1 1571 1 1578 1 1579 1 1588 1 1608 1 1612 2 1621 1 1636 1 1639 1 1681 1 1697 1 1712 1 1714 1 1729 1 1752 1 1755 1 1774 1 1793 1 1811 1 1831 1 1861 1 1864 1 1867 1 1874 1 1885 1 1899 1 1951 1 2036 1 2057 1 2060 1 2135 1 2139 1 2147 1 2224 1 2244 1 2251 1 2319 1 2330 1 2345 1 2427 1 2489 1 2540 1 2553 1 2554 2 2617 1 2672 1 2711 2 2720 1 2727 1 2739 1 2776 1 2781 1 2824 1 2882 1 2884 1 2886 1 2887 1 2923 1 2935 1 2994 1 3002 1 3034 1 3038 1 3082 1 3090 1 3143 2 3156 1 3204 1 3263 1 3264 1 3398 1 3446 1 3462 1 3613 1 3620 1 3720 1 3993 1 4060 1 4212 1 4768 1 4952 1 5085 1 5474 1 5485 1 8740 1 15374 1 25875 1 29040 1 97906 1 1513592 1 [ESTIMATING YIELD CURVE] [BOOTSTRAPPING HISTOGRAM] .._......_......._............_...___......_..._.._...._............_.._ ............_._._......._.._.._................ [COMPUTING CONFIDENCE INTERVALS] [WRITING OUTPUT]