File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/b16e769d71e51d3fa921ee898b9709/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:53:43
                             Started mapping on |	Jun 08 10:00:18
                                    Finished on |	Jun 08 10:45:36
       Mapping speed, Million of reads per hour |	270.47

                          Number of input reads |	204206882
                      Average input read length |	237
                                    UNIQUE READS:
                   Uniquely mapped reads number |	189394515
                        Uniquely mapped reads % |	92.75%
                          Average mapped length |	236.97
                       Number of splices: Total |	186559739
            Number of splices: Annotated (sjdb) |	182403860
                       Number of splices: GT/AG |	184478593
                       Number of splices: GC/AG |	1247141
                       Number of splices: AT/AC |	137320
               Number of splices: Non-canonical |	696685
                      Mismatch rate per base, % |	0.22%
                         Deletion rate per base |	0.02%
                        Deletion average length |	1.96
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.63
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	11174241
             % of reads mapped to multiple loci |	5.47%
        Number of reads mapped to too many loci |	444456
             % of reads mapped to too many loci |	0.22%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2706582
                 % of reads unmapped: too short |	1.33%
                Number of reads unmapped: other |	487088
                     % of reads unmapped: other |	0.24%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%