File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/8b89738c4db2e66c3c9258e509886c/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 08:30:47
                             Started mapping on |	Jun 08 08:37:53
                                    Finished on |	Jun 08 08:42:58
       Mapping speed, Million of reads per hour |	325.86

                          Number of input reads |	27607396
                      Average input read length |	160
                                    UNIQUE READS:
                   Uniquely mapped reads number |	18002728
                        Uniquely mapped reads % |	65.21%
                          Average mapped length |	182.47
                       Number of splices: Total |	12357588
            Number of splices: Annotated (sjdb) |	11916393
                       Number of splices: GT/AG |	12037147
                       Number of splices: GC/AG |	83917
                       Number of splices: AT/AC |	9738
               Number of splices: Non-canonical |	226786
                      Mismatch rate per base, % |	0.36%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.79
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.50
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8487513
             % of reads mapped to multiple loci |	30.74%
        Number of reads mapped to too many loci |	324083
             % of reads mapped to too many loci |	1.17%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	728957
                 % of reads unmapped: too short |	2.64%
                Number of reads unmapped: other |	64115
                     % of reads unmapped: other |	0.23%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%